RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 CAPNS2Q96L46 248 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 TIPINQ9BVW5 301 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 GBP3Q9H0R5 595 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 NDST4Q9H3R1 872 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 ABHD16BQ9H3Z7 469 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 RNPEPQ9H4A4 650 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 DHX33Q9H6R0 707 aaKnown RBP4.55□□□□□ -1.68
MCF2-201ENST00000338585 GJD2Q9UKL4 321 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 PCDHB13Q9Y5F0 798 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 EMSYQ7Z589 1322 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 DENND3A2RUS2 1198 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 EPHB6O15197 1021 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 FGFR1OPO95684 399 aaKnown RBP4.54□□□□□ -1.68
MCF2-201ENST00000338585 TBC1D8O95759 1140 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 LGALS2P05162 132 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 GLRA2P23416 452 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 DNM2P50570 870 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 GTF2BQ00403 316 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 APBA1Q02410 837 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 MKRN4PQ13434 485 aaPredicted RBP4.54□□□□□ -1.68
MCF2-201ENST00000338585 LAMC2Q13753 1193 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 DUSP28Q4G0W2 176 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 OLFML2BQ68BL8 750 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 STXBP4Q6ZWJ1 553 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 TAS1R3Q7RTX0 852 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 PLPPR4Q7Z2D5 763 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 TMEM139Q8IV31 216 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 LRRC71Q8N4P6 559 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 ATP8B4Q8TF62 1192 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 SLC7A3Q8WY07 619 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 KIFAP3Q92845 792 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 ZNF668Q96K58 619 aaPredicted RBP4.54□□□□□ -1.68
MCF2-201ENST00000338585 CBWD1Q9BRT8 395 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 PCIF1Q9H4Z3 704 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 KMT5AQ9NQR1 393 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 NRBP2Q9NSY0 501 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 TBX20Q9UMR3 447 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 GABRQQ9UN88 632 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 TRPC6Q9Y210 931 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 UBE4BO95155 1302 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 ITIH6Q6UXX5 1313 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 A0A1W2PQC6 194 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 TTC26A0AVF1 554 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 USP27XA6NNY8 438 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 AKR1B15C9JRZ8 316 aaPredicted RBP4.54□□□□□ -1.68
MCF2-201ENST00000338585 ANKRD63C9JTQ0 380 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 MFAP3LO75121 409 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 MAFO75444 373 aaPredicted RBP4.54□□□□□ -1.68
MCF2-201ENST00000338585 GJB1P08034 283 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 HOXC6P09630 235 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 ZNF865P0CJ78 1059 aaPredicted RBP4.54□□□□□ -1.68
MCF2-201ENST00000338585 MAPTP10636 758 aaKnown RBP4.54□□□□□ -1.68
MCF2-201ENST00000338585 ARL2P36404 184 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 MARSP56192 900 aaKnown RBP4.54□□□□□ -1.68
MCF2-201ENST00000338585 IGBP1P78318 339 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 TNFAIP2Q03169 654 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 NOGQ13253 232 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 DEFB115Q30KQ5 88 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 DCAF17Q5H9S7 520 aaPredicted RBP4.54□□□□□ -1.68
MCF2-201ENST00000338585 SLC39A4Q6P5W5 647 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 HS2ST1Q7LGA3 356 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 PPFIBP1Q86W92 1011 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 GPIHBP1Q8IV16 184 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 RDH13Q8NBN7 331 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 ZNF784Q8NCA9 323 aaPredicted RBP4.54□□□□□ -1.68
MCF2-201ENST00000338585 OR6J1Q8NGC5 347 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 PPTC7Q8NI37 304 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 SPIRE2Q8WWL2 714 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 BBXQ8WY36 941 aaPredicted RBP4.54□□□□□ -1.68
MCF2-201ENST00000338585 ACCSQ96QU6 501 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 APBA2Q99767 749 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 NTPCRQ9BSD7 190 aaKnown RBP4.54□□□□□ -1.68
MCF2-201ENST00000338585 C16orf70Q9BSU1 422 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 CRACR2AQ9BSW2 395 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 KRTAP3-3Q9BYR6 98 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 KRTAP3-2Q9BYR7 98 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 TMX1Q9H3N1 280 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 ST6GALNAC4Q9H4F1 302 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 SMARCAD1Q9H4L7 1026 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 SUGCTQ9HAC7 445 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 DMAC2Q9NW81 257 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 SLC5A4Q9NY91 659 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 SIK3Q9Y2K2 1263 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.54□□□□□ -1.68
MCF2-201ENST00000338585 GOLGA8IPA6NC78 632 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 LRRIQ4A6NIV6 560 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 GOLGA8JA6NMD2 632 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 DYNC1LI2O43237 492 aaPredicted RBP4.54□□□□□ -1.68
MCF2-201ENST00000338585 ZNF500O60304 480 aaPredicted RBP4.54□□□□□ -1.68
MCF2-201ENST00000338585 GNA14O95837 355 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 IGHA2P01877 340 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 EDN1P05305 212 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 TPM2P07951 284 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 MMP3P08254 477 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 INSRRP14616 1297 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 RPL13P26373 211 aaKnown RBP4.54□□□□□ -1.68
MCF2-201ENST00000338585 ADSSP30520 456 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 RFC5P40937 340 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 RGS2P41220 211 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 PSMC4P43686 418 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms