RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 CPLX3Q8WVH0 158 aa16.97■□□□□ 0.31
LIMS1-202ENST00000338045 SLC7A3Q8WY07 619 aa16.97■□□□□ 0.31
LIMS1-202ENST00000338045 GLG1Q92896 1179 aa16.97■□□□□ 0.31
LIMS1-202ENST00000338045 IQCDQ96DY2 449 aa16.97■□□□□ 0.31
LIMS1-202ENST00000338045 SMARCAD1Q9H4L7 1026 aa16.97■□□□□ 0.31
LIMS1-202ENST00000338045 KMT5AQ9NQR1 393 aa16.97■□□□□ 0.31
LIMS1-202ENST00000338045 CAPN11Q9UMQ6 739 aa16.97■□□□□ 0.31
LIMS1-202ENST00000338045 TTC26A0AVF1 554 aa16.97■□□□□ 0.31
LIMS1-202ENST00000338045 CCDC169A6NNP5 214 aa16.97■□□□□ 0.31
LIMS1-202ENST00000338045 TULP1O00294 542 aaPredicted RBP16.97■□□□□ 0.31
LIMS1-202ENST00000338045 ARL2P36404 184 aa16.97■□□□□ 0.31
LIMS1-202ENST00000338045 TRIM50Q86XT4 487 aa16.97■□□□□ 0.31
LIMS1-202ENST00000338045 MAP4K3Q8IVH8 894 aa16.97■□□□□ 0.31
LIMS1-202ENST00000338045 PPTC7Q8NI37 304 aa16.97■□□□□ 0.31
LIMS1-202ENST00000338045 POLR3FQ9H1D9 316 aaPredicted RBP16.97■□□□□ 0.31
LIMS1-202ENST00000338045 ARHGAP28Q9P2N2 729 aa16.97■□□□□ 0.31
LIMS1-202ENST00000338045 TBX20Q9UMR3 447 aa16.97■□□□□ 0.31
LIMS1-202ENST00000338045 ADGRA3Q8IWK6 1321 aa16.96■□□□□ 0.31
LIMS1-202ENST00000338045 ARHGAP6O43182 974 aa16.96■□□□□ 0.31
LIMS1-202ENST00000338045 MAFO75444 373 aaPredicted RBP16.96■□□□□ 0.31
LIMS1-202ENST00000338045 ABCD1P33897 745 aa16.96■□□□□ 0.31
LIMS1-202ENST00000338045 PSMC2P35998 433 aaKnown RBP16.96■□□□□ 0.31
LIMS1-202ENST00000338045 CRHR2Q13324 411 aa16.96■□□□□ 0.31
LIMS1-202ENST00000338045 ACVR2BQ13705 512 aa16.96■□□□□ 0.31
LIMS1-202ENST00000338045 PLCB4Q15147 1175 aa16.96■□□□□ 0.31
LIMS1-202ENST00000338045 IFT74Q96LB3 600 aa16.96■□□□□ 0.31
LIMS1-202ENST00000338045 NAA15Q9BXJ9 866 aaKnown RBP16.96■□□□□ 0.31
LIMS1-202ENST00000338045 ABHD10Q9NUJ1 306 aa16.96■□□□□ 0.31
LIMS1-202ENST00000338045 A0A1W2PQJ5 194 aa16.95■□□□□ 0.3
LIMS1-202ENST00000338045 DENND3A2RUS2 1198 aa16.95■□□□□ 0.3
LIMS1-202ENST00000338045 ZBTB42B2RXF5 422 aa16.95■□□□□ 0.3
LIMS1-202ENST00000338045 H0YCG3 227 aa16.95■□□□□ 0.3
LIMS1-202ENST00000338045 TOMM70O94826 608 aa16.95■□□□□ 0.3
LIMS1-202ENST00000338045 SCP2P22307 547 aa16.95■□□□□ 0.3
LIMS1-202ENST00000338045 KRT9P35527 623 aa16.95■□□□□ 0.3
LIMS1-202ENST00000338045 KLK7P49862 253 aa16.95■□□□□ 0.3
LIMS1-202ENST00000338045 DUSP28Q4G0W2 176 aa16.95■□□□□ 0.3
LIMS1-202ENST00000338045 GJC2Q5T442 439 aaPredicted RBP16.95■□□□□ 0.3
LIMS1-202ENST00000338045 E4F1Q66K89 784 aaPredicted RBP16.95■□□□□ 0.3
LIMS1-202ENST00000338045 ZIC5Q96T25 663 aa16.95■□□□□ 0.3
LIMS1-202ENST00000338045 KIFC3Q9BVG8 833 aa16.95■□□□□ 0.3
LIMS1-202ENST00000338045 EXOC7Q9UPT5 735 aa16.95■□□□□ 0.3
LIMS1-202ENST00000338045 DOCK3Q8IZD9 2030 aa16.95■□□□□ 0.3
LIMS1-202ENST00000338045 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.95■□□□□ 0.3
LIMS1-202ENST00000338045 CA12O43570 354 aa16.95■□□□□ 0.3
LIMS1-202ENST00000338045 XRCC5P13010 732 aaKnown RBP16.95■□□□□ 0.3
LIMS1-202ENST00000338045 TRIM21P19474 475 aaKnown RBP16.95■□□□□ 0.3
LIMS1-202ENST00000338045 MARK3P27448 753 aa16.95■□□□□ 0.3
LIMS1-202ENST00000338045 KCNMA1Q12791 1236 aa16.95■□□□□ 0.3
LIMS1-202ENST00000338045 KCNH2Q12809 1159 aa16.95■□□□□ 0.3
LIMS1-202ENST00000338045 IQSEC1Q6DN90 963 aa16.95■□□□□ 0.3
LIMS1-202ENST00000338045 FAM186BQ8IYM0 893 aa16.95■□□□□ 0.3
LIMS1-202ENST00000338045 TMEM143Q96AN5 459 aa16.95■□□□□ 0.3
LIMS1-202ENST00000338045 DNAJC7Q99615 494 aa16.95■□□□□ 0.3
LIMS1-202ENST00000338045 LUC7L2Q9Y383 392 aaKnown RBP16.95■□□□□ 0.3
LIMS1-202ENST00000338045 IGKV6-21A0A0C4DH24 114 aa16.94■□□□□ 0.3
LIMS1-202ENST00000338045 GAS2O43903 313 aaKnown RBP16.94■□□□□ 0.3
LIMS1-202ENST00000338045 IGHA2P01877 340 aa16.94■□□□□ 0.3
LIMS1-202ENST00000338045 HOXD8P13378 290 aaPredicted RBP16.94■□□□□ 0.3
LIMS1-202ENST00000338045 SMPD1P17405 629 aa16.94■□□□□ 0.3
LIMS1-202ENST00000338045 GLRA2P23416 452 aa16.94■□□□□ 0.3
LIMS1-202ENST00000338045 NAMPTP43490 491 aa16.94■□□□□ 0.3
LIMS1-202ENST00000338045 PPP2R5AQ15172 486 aa16.94■□□□□ 0.3
LIMS1-202ENST00000338045 EXOC8Q8IYI6 725 aa16.94■□□□□ 0.3
LIMS1-202ENST00000338045 ASAP3Q8TDY4 903 aa16.94■□□□□ 0.3
LIMS1-202ENST00000338045 SOCS4Q8WXH5 440 aa16.94■□□□□ 0.3
LIMS1-202ENST00000338045 SLC35C1Q96A29 364 aa16.94■□□□□ 0.3
LIMS1-202ENST00000338045 GJD2Q9UKL4 321 aa16.94■□□□□ 0.3
LIMS1-202ENST00000338045 FRMD4BQ9Y2L6 1034 aa16.94■□□□□ 0.3
LIMS1-202ENST00000338045 HBP1O60381 514 aa16.93■□□□□ 0.3
LIMS1-202ENST00000338045 LGALS2P05162 132 aa16.93■□□□□ 0.3
LIMS1-202ENST00000338045 CYP2J2P51589 502 aa16.93■□□□□ 0.3
LIMS1-202ENST00000338045 TAS1R3Q7RTX0 852 aa16.93■□□□□ 0.3
LIMS1-202ENST00000338045 CCAR2Q8N163 923 aaKnown RBP16.93■□□□□ 0.3
LIMS1-202ENST00000338045 CCDC155Q8N6L0 562 aa16.93■□□□□ 0.3
LIMS1-202ENST00000338045 OR8K1Q8NGG5 319 aa16.93■□□□□ 0.3
LIMS1-202ENST00000338045 AFG1LQ8WV93 481 aa16.93■□□□□ 0.3
LIMS1-202ENST00000338045 ERAP1Q9NZ08 941 aa16.93■□□□□ 0.3
LIMS1-202ENST00000338045 TISP43B9A030 160 aa16.93■□□□□ 0.3
LIMS1-202ENST00000338045 MAPK13O15264 365 aa16.93■□□□□ 0.3
LIMS1-202ENST00000338045 PPFIA4O75335 1185 aa16.93■□□□□ 0.3
LIMS1-202ENST00000338045 AFPP02771 609 aaKnown RBP16.93■□□□□ 0.3
LIMS1-202ENST00000338045 ZBED6P86452 979 aa16.93■□□□□ 0.3
LIMS1-202ENST00000338045 OLFML2BQ68BL8 750 aa16.93■□□□□ 0.3
LIMS1-202ENST00000338045 PCMTD1Q96MG8 357 aaPredicted RBP16.93■□□□□ 0.3
LIMS1-202ENST00000338045 CBWD1Q9BRT8 395 aa16.93■□□□□ 0.3
LIMS1-202ENST00000338045 EDEM3Q9BZQ6 932 aa16.93■□□□□ 0.3
LIMS1-202ENST00000338045 AGPAT5Q9NUQ2 364 aa16.93■□□□□ 0.3
LIMS1-202ENST00000338045 FLRT1Q9NZU1 646 aa16.93■□□□□ 0.3
LIMS1-202ENST00000338045 ZHX1Q9UKY1 873 aaPredicted RBP16.93■□□□□ 0.3
LIMS1-202ENST00000338045 EXOC3O60645 756 aa16.92■□□□□ 0.3
LIMS1-202ENST00000338045 CNGA1P29973 690 aa16.92■□□□□ 0.3
LIMS1-202ENST00000338045 RGS2P41220 211 aa16.92■□□□□ 0.3
LIMS1-202ENST00000338045 MCCD1P59942 119 aaPredicted RBP16.92■□□□□ 0.3
LIMS1-202ENST00000338045 BRDTQ58F21 947 aaPredicted RBP16.92■□□□□ 0.3
LIMS1-202ENST00000338045 IER5Q5VY09 327 aa16.92■□□□□ 0.3
LIMS1-202ENST00000338045 CYP4F22Q6NT55 531 aa16.92■□□□□ 0.3
LIMS1-202ENST00000338045 MMRN2Q9H8L6 949 aa16.92■□□□□ 0.3
LIMS1-202ENST00000338045 USP27XA6NNY8 438 aa16.91■□□□□ 0.3
LIMS1-202ENST00000338045 EPHB6O15197 1021 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms