RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 LRIG3Q6UXM1 1119 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 PIGWQ7Z7B1 504 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 DGKHQ86XP1 1220 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 LRRC49Q8IUZ0 686 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 CCT7Q99832 543 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 MKNK2Q9HBH9 465 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 CYP39A1Q9NYL5 469 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 SAMD15Q9P1V8 674 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 SEL1LQ9UBV2 794 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 CNOT8Q9UFF9 292 aaKnown RBP7.16□□□□□ -1.26
ZNF540-201ENST00000316433 PSME4Q14997 1843 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 POTEFA5A3E0 1075 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 NDUFA10O95299 355 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 SKIP12755 728 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 S100A1P23297 94 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 MATR3P43243 847 aaKnown RBP eCLIP7.16□□□□□ -1.26
ZNF540-201ENST00000316433 PTDSS1P48651 473 aaKnown RBP7.16□□□□□ -1.26
ZNF540-201ENST00000316433 DHX9Q08211 1270 aaKnown RBP7.16□□□□□ -1.26
ZNF540-201ENST00000316433 ASTE1Q2TB18 679 aaPredicted RBP7.16□□□□□ -1.26
ZNF540-201ENST00000316433 ODF2Q5BJF6 829 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 TTI2Q6NXR4 508 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 C3orf62Q6ZUJ4 267 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 IRF2BP1Q8IU81 584 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 CYP4X1Q8N118 509 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 MB21D1Q8N884 522 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 SEC14L1Q92503 715 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 CASP10Q92851 521 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 ZNF333Q96JL9 665 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 SETDB2Q96T68 719 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 CENPKQ9BS16 269 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 CCDC28BQ9BUN5 200 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 CSRNP2Q9H175 543 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 ATAD3AQ9NVI7 634 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 LUC7L2Q9Y383 392 aaKnown RBP7.16□□□□□ -1.26
ZNF540-201ENST00000316433 FADS3Q9Y5Q0 445 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 FLT1P17948 1338 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 SPTLC1O15269 473 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 NVLO15381 856 aaKnown RBP7.16□□□□□ -1.26
ZNF540-201ENST00000316433 PEX11AO75192 247 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 ASMTLO95671 621 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 FAM153BP0C7A2 387 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 POTEJP0CG39 1038 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 CD44P16070 742 aaKnown RBP7.16□□□□□ -1.26
ZNF540-201ENST00000316433 ITGA6P23229 1130 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 MRPS25P82663 173 aaKnown RBP7.16□□□□□ -1.26
ZNF540-201ENST00000316433 AIMP1Q12904 312 aaKnown RBP7.16□□□□□ -1.26
ZNF540-201ENST00000316433 FAM153CQ494X1 144 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 GALNTL6Q49A17 601 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 TMEM259Q4ZIN3 620 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 LIN52Q52LA3 116 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 MIGA2Q7L4E1 593 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 BPHLQ86WA6 291 aaPredicted RBP7.16□□□□□ -1.26
ZNF540-201ENST00000316433 IFT20Q8IY31 132 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 RBM46Q8TBY0 533 aaKnown RBP7.16□□□□□ -1.26
ZNF540-201ENST00000316433 GATA6Q92908 595 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 HPS3Q969F9 1004 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 NLRP3Q96P20 1036 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 LRRC27Q9C0I9 530 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 LARSQ9P2J5 1176 aaKnown RBP7.16□□□□□ -1.26
ZNF540-201ENST00000316433 ARPP21Q9UBL0 812 aaPredicted RBP7.16□□□□□ -1.26
ZNF540-201ENST00000316433 STK17AQ9UEE5 414 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 FAM153AQ9UHL3 310 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 RASAL2Q9UJF2 1139 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 TTC7AQ9ULT0 858 aaPredicted RBP7.16□□□□□ -1.26
ZNF540-201ENST00000316433 SSX2IPQ9Y2D8 614 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 TSC22D4Q9Y3Q8 395 aa7.16□□□□□ -1.26
ZNF540-201ENST00000316433 FAM32AQ9Y421 112 aaKnown RBP7.16□□□□□ -1.26
ZNF540-201ENST00000316433 TTI1O43156 1089 aa7.15□□□□□ -1.26
ZNF540-201ENST00000316433 TEX33O43247 280 aa7.15□□□□□ -1.26
ZNF540-201ENST00000316433 ATP9AO75110 1047 aa7.15□□□□□ -1.26
ZNF540-201ENST00000316433 TCP1P17987 556 aaKnown RBP7.15□□□□□ -1.26
ZNF540-201ENST00000316433 CYLC1P35663 651 aaPredicted RBP7.15□□□□□ -1.26
ZNF540-201ENST00000316433 PPARAQ07869 468 aa7.15□□□□□ -1.26
ZNF540-201ENST00000316433 BNIP1Q12981 228 aa7.15□□□□□ -1.26
ZNF540-201ENST00000316433 CLUL1Q15846 466 aa7.15□□□□□ -1.26
ZNF540-201ENST00000316433 ERMARDQ5T6L9 678 aa7.15□□□□□ -1.26
ZNF540-201ENST00000316433 ASRGL1Q7L266 308 aa7.15□□□□□ -1.26
ZNF540-201ENST00000316433 CATIPQ7Z7H3 387 aa7.15□□□□□ -1.26
ZNF540-201ENST00000316433 SPATA24Q86W54 205 aa7.15□□□□□ -1.26
ZNF540-201ENST00000316433 ENDOVQ8N8Q3 282 aaKnown RBP7.15□□□□□ -1.26
ZNF540-201ENST00000316433 SCAIQ8N9R8 606 aa7.15□□□□□ -1.26
ZNF540-201ENST00000316433 SPATA4Q8NEY3 305 aa7.15□□□□□ -1.26
ZNF540-201ENST00000316433 ZNF317Q96PQ6 595 aaPredicted RBP7.15□□□□□ -1.26
ZNF540-201ENST00000316433 RAB3IPQ96QF0 476 aaPredicted RBP7.15□□□□□ -1.26
ZNF540-201ENST00000316433 ZSCAN10Q96SZ4 725 aaPredicted RBP7.15□□□□□ -1.26
ZNF540-201ENST00000316433 SPZ1Q9BXG8 430 aa7.15□□□□□ -1.26
ZNF540-201ENST00000316433 LRRC2Q9BYS8 371 aa7.15□□□□□ -1.26
ZNF540-201ENST00000316433 TMEM59LQ9UK28 342 aa7.15□□□□□ -1.26
ZNF540-201ENST00000316433 NFU1Q9UMS0 254 aa7.15□□□□□ -1.26
ZNF540-201ENST00000316433 A0A087X0B3 334 aa7.15□□□□□ -1.27
ZNF540-201ENST00000316433 MAGEB3O15480 346 aa7.15□□□□□ -1.27
ZNF540-201ENST00000316433 POLR2DO15514 142 aaKnown RBP7.15□□□□□ -1.27
ZNF540-201ENST00000316433 FGFR1OPO95684 399 aaKnown RBP7.15□□□□□ -1.27
ZNF540-201ENST00000316433 SCG2P13521 617 aa7.15□□□□□ -1.27
ZNF540-201ENST00000316433 SERPINB3P29508 390 aa7.15□□□□□ -1.27
ZNF540-201ENST00000316433 FOSBP53539 338 aa7.15□□□□□ -1.27
ZNF540-201ENST00000316433 GRM4Q14833 912 aa7.15□□□□□ -1.27
ZNF540-201ENST00000316433 CCDC152Q4G0S7 254 aa7.15□□□□□ -1.27
ZNF540-201ENST00000316433 PDCD4Q53EL6 469 aaKnown RBP7.15□□□□□ -1.27
ZNF540-201ENST00000316433 AGBL2Q5U5Z8 902 aa7.15□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms