RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 MAP3K10Q02779 954 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 LZICQ8WZA0 190 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 PAPOLBQ9NRJ5 636 aaKnown RBP9.29□□□□□ -0.92
USF3-201ENST00000316407 MRGBPQ9NV56 204 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 WDR7Q9Y4E6 1490 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 USP17L12C9JPN9 530 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 USP17L21D6R901 530 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 FLT4P35916 1363 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 LBRQ14739 615 aaKnown RBP9.29□□□□□ -0.92
USF3-201ENST00000316407 ZNF746Q6NUN9 644 aaPredicted RBP9.29□□□□□ -0.92
USF3-201ENST00000316407 KRT38O76015 456 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 TMCC1O94876 653 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 USP14P54578 494 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 PRPF39Q86UA1 669 aaKnown RBP9.28□□□□□ -0.92
USF3-201ENST00000316407 SULF1Q8IWU6 871 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 CLEC4FQ8N1N0 589 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 MDM1Q8TC05 714 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 NR1H3Q13133 447 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 MMP1P03956 469 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 SPICE1Q8N0Z3 855 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 SNF8Q96H20 258 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 NARS2Q96I59 477 aaKnown RBP9.28□□□□□ -0.92
USF3-201ENST00000316407 TMOD4Q9NZQ9 345 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.28□□□□□ -0.92
USF3-201ENST00000316407 TJP3O95049 919 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 PLEKHA7Q6IQ23 1121 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 PNMA1Q8ND90 353 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 TMEM245Q9H330 911 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 ATP6V0A4Q9HBG4 840 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 DDX18Q9NVP1 670 aaKnown RBP9.28□□□□□ -0.92
USF3-201ENST00000316407 TM6SF1Q9BZW5 370 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 THAP9Q9H5L6 903 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 CTIFO43310 598 aaKnown RBP9.28□□□□□ -0.92
USF3-201ENST00000316407 KPNA2P52292 529 aaKnown RBP9.28□□□□□ -0.92
USF3-201ENST00000316407 SARM1Q6SZW1 724 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 GPR101Q96P66 508 aaPredicted RBP9.28□□□□□ -0.92
USF3-201ENST00000316407 UNC45AQ9H3U1 944 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 TPD52L2O43399 206 aaKnown RBP9.28□□□□□ -0.92
USF3-201ENST00000316407 TEDDM1Q5T9Z0 273 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 CABLES1Q8TDN4 633 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 VPS50Q96JG6 964 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 RNF14Q9UBS8 474 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 KLRF2D3W0D1 207 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 LARGE1O95461 756 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 KCTD1Q719H9 257 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 OR8H2Q8N162 312 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 SLC17A8Q8NDX2 589 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 CATSPER1Q8NEC5 780 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 NGLY1Q96IV0 654 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 CLEC11AQ9Y240 323 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 PCDHB6Q9Y5E3 794 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 ATP5JP18859 108 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 AARS2Q5JTZ9 985 aaKnown RBP9.28□□□□□ -0.92
USF3-201ENST00000316407 FSD1LQ9BXM9 530 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 SNUPNO95149 360 aaKnown RBP9.28□□□□□ -0.92
USF3-201ENST00000316407 ENO3P13929 434 aaPredicted RBP9.28□□□□□ -0.92
USF3-201ENST00000316407 IL10P22301 178 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 FBXW4P57775 412 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 C4orf33Q8N1A6 199 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 EPAS1Q99814 870 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 LRRC1Q9BTT6 524 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 ADGRL1O94910 1474 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 KIF20BQ96Q89 1820 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 IPO5O00410 1097 aaKnown RBP9.28□□□□□ -0.92
USF3-201ENST00000316407 BPIFB4P59827 614 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 CRYMQ14894 314 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 KCTD21Q4G0X4 260 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 FASTKD1Q53R41 847 aaKnown RBP9.28□□□□□ -0.92
USF3-201ENST00000316407 CYLDQ9NQC7 956 aa9.28□□□□□ -0.92
USF3-201ENST00000316407 COL17A1Q9UMD9 1497 aaPredicted RBP9.28□□□□□ -0.92
USF3-201ENST00000316407 GOLGA8JA6NMD2 632 aa9.27□□□□□ -0.92
USF3-201ENST00000316407 ANGPT2O15123 496 aa9.27□□□□□ -0.92
USF3-201ENST00000316407 SNX2O60749 519 aa9.27□□□□□ -0.92
USF3-201ENST00000316407 PPP1R37O75864 691 aa9.27□□□□□ -0.92
USF3-201ENST00000316407 DAB2IPQ5VWQ8 1189 aa9.27□□□□□ -0.92
USF3-201ENST00000316407 RESP18Q5W5W9 173 aa9.27□□□□□ -0.92
USF3-201ENST00000316407 TTC33Q6PID6 262 aaPredicted RBP9.27□□□□□ -0.92
USF3-201ENST00000316407 KDELC2Q7Z4H8 507 aa9.27□□□□□ -0.92
USF3-201ENST00000316407 LUZP2Q86TE4 346 aa9.27□□□□□ -0.92
USF3-201ENST00000316407 DDHD1Q8NEL9 900 aa9.27□□□□□ -0.92
USF3-201ENST00000316407 PAPOLAP51003 745 aaKnown RBP9.27□□□□□ -0.92
USF3-201ENST00000316407 MB21D1Q8N884 522 aa9.27□□□□□ -0.92
USF3-201ENST00000316407 MPP4Q96JB8 637 aa9.27□□□□□ -0.92
USF3-201ENST00000316407 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.27□□□□□ -0.92
USF3-201ENST00000316407 MRPL1Q9BYD6 325 aaKnown RBP9.27□□□□□ -0.92
USF3-201ENST00000316407 GDAQ9Y2T3 454 aa9.27□□□□□ -0.92
USF3-201ENST00000316407 GLMNQ92990 594 aa9.27□□□□□ -0.93
USF3-201ENST00000316407 FAM149B1Q96BN6 582 aa9.27□□□□□ -0.93
USF3-201ENST00000316407 CARD14Q9BXL6 1004 aa9.27□□□□□ -0.93
USF3-201ENST00000316407 IRX2Q9BZI1 471 aaPredicted RBP9.27□□□□□ -0.93
USF3-201ENST00000316407 CCPG1Q9ULG6 757 aa9.27□□□□□ -0.93
USF3-201ENST00000316407 ELMSAN1Q6PJG2 1045 aa9.27□□□□□ -0.93
USF3-201ENST00000316407 ZBTB33Q86T24 672 aa9.27□□□□□ -0.93
USF3-201ENST00000316407 C7orf31Q8N865 590 aa9.27□□□□□ -0.93
USF3-201ENST00000316407 NSUN7Q8NE18 718 aaKnown RBP9.27□□□□□ -0.93
USF3-201ENST00000316407 ADPGKQ9BRR6 497 aa9.27□□□□□ -0.93
USF3-201ENST00000316407 FAM8A1Q9UBU6 413 aa9.27□□□□□ -0.93
USF3-201ENST00000316407 BCS1LQ9Y276 419 aa9.27□□□□□ -0.93
USF3-201ENST00000316407 BNIP3LO60238 219 aa9.27□□□□□ -0.93
USF3-201ENST00000316407 FBXO31Q5XUX0 539 aaPredicted RBP9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms