RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 DACT1Q9NYF0 836 aa21.86■■□□□ 1.09
LIME1-201ENST00000309546 RGL1Q9NZL6 768 aa21.86■■□□□ 1.09
LIME1-201ENST00000309546 PCDHGC5Q9Y5F6 944 aa21.86■■□□□ 1.09
LIME1-201ENST00000309546 TBX10O75333 385 aa21.85■■□□□ 1.09
LIME1-201ENST00000309546 FGF18O76093 207 aa21.85■■□□□ 1.09
LIME1-201ENST00000309546 DLX2Q07687 328 aaPredicted RBP21.85■■□□□ 1.09
LIME1-201ENST00000309546 CTTNQ14247 550 aaKnown RBP21.85■■□□□ 1.09
LIME1-201ENST00000309546 CTC1Q2NKJ3 1217 aa21.85■■□□□ 1.09
LIME1-201ENST00000309546 RBM23Q86U06 439 aaKnown RBP21.85■■□□□ 1.09
LIME1-201ENST00000309546 LRRC43Q8N309 656 aa21.85■■□□□ 1.09
LIME1-201ENST00000309546 ZNF579Q8NAF0 562 aaKnown RBP21.85■■□□□ 1.09
LIME1-201ENST00000309546 CASD1Q96PB1 797 aa21.85■■□□□ 1.09
LIME1-201ENST00000309546 CWH43Q9H720 699 aa21.85■■□□□ 1.09
LIME1-201ENST00000309546 CD320Q9NPF0 282 aa21.85■■□□□ 1.09
LIME1-201ENST00000309546 PIN4Q9Y237 131 aaKnown RBP21.85■■□□□ 1.09
LIME1-201ENST00000309546 FAM50BQ9Y247 325 aa21.85■■□□□ 1.09
LIME1-201ENST00000309546 YWHABP31946 246 aaKnown RBP21.84■■□□□ 1.09
LIME1-201ENST00000309546 NRIP1P48552 1158 aa21.84■■□□□ 1.09
LIME1-201ENST00000309546 NDUFV1P49821 464 aa21.84■■□□□ 1.09
LIME1-201ENST00000309546 SPIRE1Q08AE8 756 aa21.84■■□□□ 1.09
LIME1-201ENST00000309546 CALCRLQ16602 461 aa21.84■■□□□ 1.09
LIME1-201ENST00000309546 CSPP1Q1MSJ5 1256 aa21.84■■□□□ 1.09
LIME1-201ENST00000309546 CLLU1OSQ5K130 101 aa21.84■■□□□ 1.09
LIME1-201ENST00000309546 CCDC83Q8IWF9 413 aa21.84■■□□□ 1.09
LIME1-201ENST00000309546 GJD3Q8N144 294 aa21.84■■□□□ 1.09
LIME1-201ENST00000309546 HELQQ8TDG4 1101 aa21.84■■□□□ 1.09
LIME1-201ENST00000309546 INO80BQ9C086 356 aaPredicted RBP21.84■■□□□ 1.09
LIME1-201ENST00000309546 TLR9Q9NR96 1032 aa21.84■■□□□ 1.09
LIME1-201ENST00000309546 COL4A3BPQ9Y5P4 624 aa21.84■■□□□ 1.09
LIME1-201ENST00000309546 BDP1A6H8Y1 2624 aa21.83■■□□□ 1.09
LIME1-201ENST00000309546 A0A0U1RQF3 1178 aa21.83■■□□□ 1.09
LIME1-201ENST00000309546 PBX3P40426 434 aa21.83■■□□□ 1.09
LIME1-201ENST00000309546 GUCY1B3Q02153 619 aa21.83■■□□□ 1.09
LIME1-201ENST00000309546 UBE3AQ05086 875 aa21.83■■□□□ 1.09
LIME1-201ENST00000309546 XKR9Q5GH70 373 aa21.83■■□□□ 1.09
LIME1-201ENST00000309546 TWF2Q6IBS0 349 aaKnown RBP21.83■■□□□ 1.09
LIME1-201ENST00000309546 LRRC55Q6ZSA7 311 aa21.83■■□□□ 1.09
LIME1-201ENST00000309546 CATSPER4Q7RTX7 472 aa21.83■■□□□ 1.09
LIME1-201ENST00000309546 TPH2Q8IWU9 490 aa21.83■■□□□ 1.09
LIME1-201ENST00000309546 C4orf19Q8IY42 314 aa21.83■■□□□ 1.09
LIME1-201ENST00000309546 KHSRPQ92945 711 aaKnown RBP eCLIP21.83■■□□□ 1.09
LIME1-201ENST00000309546 TMEM143Q96AN5 459 aa21.83■■□□□ 1.09
LIME1-201ENST00000309546 C1QTNF1Q9BXJ1 281 aa21.83■■□□□ 1.09
LIME1-201ENST00000309546 EPHX3Q9H6B9 360 aa21.83■■□□□ 1.09
LIME1-201ENST00000309546 ZSWIM4Q9H7M6 989 aa21.83■■□□□ 1.09
LIME1-201ENST00000309546 LIMCH1Q9UPQ0 1083 aa21.83■■□□□ 1.09
LIME1-201ENST00000309546 WNT7AO00755 349 aa21.82■■□□□ 1.08
LIME1-201ENST00000309546 NEMFO60524 1076 aa21.82■■□□□ 1.08
LIME1-201ENST00000309546 ATF7P17544 494 aaPredicted RBP21.82■■□□□ 1.08
LIME1-201ENST00000309546 RFC5P40937 340 aa21.82■■□□□ 1.08
LIME1-201ENST00000309546 EMC2Q15006 297 aa21.82■■□□□ 1.08
LIME1-201ENST00000309546 OTUD6AQ7L8S5 288 aa21.82■■□□□ 1.08
LIME1-201ENST00000309546 ZNF558Q96NG5 402 aa21.82■■□□□ 1.08
LIME1-201ENST00000309546 DHX33Q9H6R0 707 aaKnown RBP21.82■■□□□ 1.08
LIME1-201ENST00000309546 CHST12Q9NRB3 414 aa21.82■■□□□ 1.08
LIME1-201ENST00000309546 PPME1Q9Y570 386 aa21.82■■□□□ 1.08
LIME1-201ENST00000309546 EOMESO95936 686 aa21.81■■□□□ 1.08
LIME1-201ENST00000309546 ATP2B1P20020 1258 aa21.81■■□□□ 1.08
LIME1-201ENST00000309546 COL9A1P20849 921 aa21.81■■□□□ 1.08
LIME1-201ENST00000309546 ADAM15Q13444 863 aa21.81■■□□□ 1.08
LIME1-201ENST00000309546 SAFBQ15424 915 aaKnown RBP eCLIP21.81■■□□□ 1.08
LIME1-201ENST00000309546 LONRF3Q496Y0 759 aa21.81■■□□□ 1.08
LIME1-201ENST00000309546 KCNT2Q6UVM3 1135 aa21.81■■□□□ 1.08
LIME1-201ENST00000309546 ZNF598Q86UK7 904 aaKnown RBP21.81■■□□□ 1.08
LIME1-201ENST00000309546 EFHBQ8N7U6 833 aa21.81■■□□□ 1.08
LIME1-201ENST00000309546 PSPC1Q8WXF1 523 aaKnown RBP21.81■■□□□ 1.08
LIME1-201ENST00000309546 EIF2AK1Q9BQI3 630 aaKnown RBP21.81■■□□□ 1.08
LIME1-201ENST00000309546 TLE6Q9H808 572 aa21.81■■□□□ 1.08
LIME1-201ENST00000309546 TTC12Q9H892 705 aaPredicted RBP21.81■■□□□ 1.08
LIME1-201ENST00000309546 CD207Q9UJ71 328 aa21.81■■□□□ 1.08
LIME1-201ENST00000309546 PCDHA12Q9UN75 941 aa21.81■■□□□ 1.08
LIME1-201ENST00000309546 ZBTB39O15060 712 aa21.8■■□□□ 1.08
LIME1-201ENST00000309546 SRGAP2CP0DJJ0 459 aa21.8■■□□□ 1.08
LIME1-201ENST00000309546 TXKP42681 527 aa21.8■■□□□ 1.08
LIME1-201ENST00000309546 PHKA2P46019 1235 aa21.8■■□□□ 1.08
LIME1-201ENST00000309546 ERVFC1P60507 584 aa21.8■■□□□ 1.08
LIME1-201ENST00000309546 PLPP4Q5VZY2 271 aa21.8■■□□□ 1.08
LIME1-201ENST00000309546 EXOC8Q8IYI6 725 aa21.8■■□□□ 1.08
LIME1-201ENST00000309546 PRPF31Q8WWY3 499 aaKnown RBP21.8■■□□□ 1.08
LIME1-201ENST00000309546 MRPS27Q92552 414 aaKnown RBP21.8■■□□□ 1.08
LIME1-201ENST00000309546 LPPQ93052 612 aa21.8■■□□□ 1.08
LIME1-201ENST00000309546 CCDC43Q96MW1 224 aaKnown RBP21.8■■□□□ 1.08
LIME1-201ENST00000309546 IFT122Q9HBG6 1241 aa21.8■■□□□ 1.08
LIME1-201ENST00000309546 PER2O15055 1255 aa21.79■■□□□ 1.08
LIME1-201ENST00000309546 MBTPS2O43462 519 aa21.79■■□□□ 1.08
LIME1-201ENST00000309546 SLITRK3O94933 977 aa21.79■■□□□ 1.08
LIME1-201ENST00000309546 PPM1AP35813 382 aa21.79■■□□□ 1.08
LIME1-201ENST00000309546 LAMTOR4Q0VGL1 99 aa21.79■■□□□ 1.08
LIME1-201ENST00000309546 SMAD4Q13485 552 aaKnown RBP21.79■■□□□ 1.08
LIME1-201ENST00000309546 TCP11Q8WWU5 503 aa21.79■■□□□ 1.08
LIME1-201ENST00000309546 C8orf76Q96K31 380 aa21.79■■□□□ 1.08
LIME1-201ENST00000309546 MTRQ99707 1265 aa21.79■■□□□ 1.08
LIME1-201ENST00000309546 MRPL9Q9BYD2 267 aaKnown RBP21.79■■□□□ 1.08
LIME1-201ENST00000309546 ENTPD7Q9NQZ7 604 aa21.79■■□□□ 1.08
LIME1-201ENST00000309546 FAM105AQ9NUU6 356 aa21.79■■□□□ 1.08
LIME1-201ENST00000309546 PUF60Q9UHX1 559 aaKnown RBP21.79■■□□□ 1.08
LIME1-201ENST00000309546 BARX2Q9UMQ3 279 aaPredicted RBP21.79■■□□□ 1.08
LIME1-201ENST00000309546 GAS2O43903 313 aaKnown RBP21.78■■□□□ 1.08
LIME1-201ENST00000309546 SKIP12755 728 aa21.78■■□□□ 1.08
LIME1-201ENST00000309546 MCM7P33993 719 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms