RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 SERPINB13Q9UIV8 391 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 TTC7AQ9ULT0 858 aaPredicted RBP18.5■□□□□ 0.55
SYNPO-201ENST00000307662 POTEMA6NI47 508 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 COPS2P61201 443 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 SUN2Q9UH99 717 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 ITIH6Q6UXX5 1313 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 SFI1A8K8P3 1242 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 CHN1P15882 459 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 IGBP1P78318 339 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 PAGR1Q9BTK6 254 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 CLTCL1P53675 1640 aa18.49■□□□□ 0.55
SYNPO-201ENST00000307662 CDC27P30260 824 aa18.49■□□□□ 0.55
SYNPO-201ENST00000307662 RARS2Q5T160 578 aaKnown RBP18.49■□□□□ 0.55
SYNPO-201ENST00000307662 RNF169Q8NCN4 708 aa18.49■□□□□ 0.55
SYNPO-201ENST00000307662 ADGRL3Q9HAR2 1447 aa18.49■□□□□ 0.55
SYNPO-201ENST00000307662 SYCE1LA8MT33 242 aa18.49■□□□□ 0.55
SYNPO-201ENST00000307662 APBA3O96018 575 aa18.49■□□□□ 0.55
SYNPO-201ENST00000307662 TFDP2Q14188 446 aa18.49■□□□□ 0.55
SYNPO-201ENST00000307662 NCAPHQ15003 741 aa18.49■□□□□ 0.55
SYNPO-201ENST00000307662 AGGF1Q8N302 714 aaeCLIP18.49■□□□□ 0.55
SYNPO-201ENST00000307662 GUF1Q8N442 669 aaKnown RBP18.49■□□□□ 0.55
SYNPO-201ENST00000307662 RFFLQ8WZ73 363 aa18.49■□□□□ 0.55
SYNPO-201ENST00000307662 SEC16BQ96JE7 1060 aa18.49■□□□□ 0.55
SYNPO-201ENST00000307662 L3MBTL1Q9Y468 752 aa18.49■□□□□ 0.55
SYNPO-201ENST00000307662 CCND1P24385 295 aa18.49■□□□□ 0.55
SYNPO-201ENST00000307662 KLC1Q07866 573 aa18.49■□□□□ 0.55
SYNPO-201ENST00000307662 RNF103-CHMP3A0A140T963 221 aa18.49■□□□□ 0.55
SYNPO-201ENST00000307662 KRT14P02533 472 aa18.49■□□□□ 0.55
SYNPO-201ENST00000307662 LSP1P33241 339 aa18.49■□□□□ 0.55
SYNPO-201ENST00000307662 PGM1P36871 562 aa18.49■□□□□ 0.55
SYNPO-201ENST00000307662 YWHAHQ04917 246 aaPredicted RBP18.49■□□□□ 0.55
SYNPO-201ENST00000307662 PDIA2Q13087 525 aaKnown RBP18.49■□□□□ 0.55
SYNPO-201ENST00000307662 ZBED8Q8IZ13 594 aa18.49■□□□□ 0.55
SYNPO-201ENST00000307662 VPS39Q96JC1 886 aa18.49■□□□□ 0.55
SYNPO-201ENST00000307662 IRAK4Q9NWZ3 460 aa18.49■□□□□ 0.55
SYNPO-201ENST00000307662 FGFR4P22455 802 aa18.48■□□□□ 0.55
SYNPO-201ENST00000307662 STAT4Q14765 748 aa18.48■□□□□ 0.55
SYNPO-201ENST00000307662 ERFEQ4G0M1 354 aa18.48■□□□□ 0.55
SYNPO-201ENST00000307662 NUDCD3Q8IVD9 361 aa18.48■□□□□ 0.55
SYNPO-201ENST00000307662 HEXIM2Q96MH2 286 aaKnown RBP18.48■□□□□ 0.55
SYNPO-201ENST00000307662 MTA3Q9BTC8 594 aa18.48■□□□□ 0.55
SYNPO-201ENST00000307662 ZNF711Q9Y462 761 aa18.48■□□□□ 0.55
SYNPO-201ENST00000307662 USP15Q9Y4E8 981 aaPredicted RBP18.48■□□□□ 0.55
SYNPO-201ENST00000307662 BCORL1Q5H9F3 1711 aa18.48■□□□□ 0.55
SYNPO-201ENST00000307662 ORC2Q13416 577 aaPredicted RBP18.48■□□□□ 0.55
SYNPO-201ENST00000307662 TSGA10IPQ3SY00 556 aa18.48■□□□□ 0.55
SYNPO-201ENST00000307662 CCDC92Q53HC0 331 aaPredicted RBP18.48■□□□□ 0.55
SYNPO-201ENST00000307662 AGBL2Q5U5Z8 902 aa18.48■□□□□ 0.55
SYNPO-201ENST00000307662 ATP11CQ8NB49 1132 aa18.48■□□□□ 0.55
SYNPO-201ENST00000307662 SENP1Q9P0U3 644 aa18.48■□□□□ 0.55
SYNPO-201ENST00000307662 PFASO15067 1338 aa18.48■□□□□ 0.55
SYNPO-201ENST00000307662 IRAK1P51617 712 aa18.48■□□□□ 0.55
SYNPO-201ENST00000307662 DRAP1Q14919 205 aaPredicted RBP18.48■□□□□ 0.55
SYNPO-201ENST00000307662 SCARA5Q6ZMJ2 495 aa18.48■□□□□ 0.55
SYNPO-201ENST00000307662 RYBPQ8N488 228 aaPredicted RBP18.48■□□□□ 0.55
SYNPO-201ENST00000307662 PPM1NQ8N819 430 aa18.48■□□□□ 0.55
SYNPO-201ENST00000307662 ZC4H2Q9NQZ6 224 aa18.48■□□□□ 0.55
SYNPO-201ENST00000307662 GGT7Q9UJ14 662 aa18.48■□□□□ 0.55
SYNPO-201ENST00000307662 ENO4A6NNW6 628 aa18.48■□□□□ 0.55
SYNPO-201ENST00000307662 PI4K2BG5E9Z4 385 aa18.48■□□□□ 0.55
SYNPO-201ENST00000307662 AP3B2Q13367 1082 aa18.48■□□□□ 0.55
SYNPO-201ENST00000307662 MORF4L2Q15014 288 aa18.48■□□□□ 0.55
SYNPO-201ENST00000307662 KNOP1Q1ED39 458 aaKnown RBP18.48■□□□□ 0.55
SYNPO-201ENST00000307662 ZBTB33Q86T24 672 aa18.48■□□□□ 0.55
SYNPO-201ENST00000307662 PHF20L1A8MW92 1017 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 FTLP02792 175 aaPredicted RBP18.47■□□□□ 0.55
SYNPO-201ENST00000307662 IGKV5-2P06315 115 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 GPS1Q13098 491 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 TMC4Q7Z404 712 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 RASSF3Q86WH2 238 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 EXOC8Q8IYI6 725 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 C7orf31Q8N865 590 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 CATSPER1Q8NEC5 780 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 RIN2Q8WYP3 895 aaPredicted RBP18.47■□□□□ 0.55
SYNPO-201ENST00000307662 VPS11Q9H270 941 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 CYP4F11Q9HBI6 524 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 MECOMQ03112 1051 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 CDO1Q16878 200 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 XPO6Q96QU8 1125 aaKnown RBP18.47■□□□□ 0.55
SYNPO-201ENST00000307662 TXNRD1Q16881 649 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 IZUMO3Q5VZ72 239 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 RFX8Q6ZV50 586 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 RNF25Q96BH1 459 aaPredicted RBP18.47■□□□□ 0.55
SYNPO-201ENST00000307662 RNPC3Q96LT9 517 aaKnown RBP18.47■□□□□ 0.55
SYNPO-201ENST00000307662 CHP1Q99653 195 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 WWP1Q9H0M0 922 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.47■□□□□ 0.55
SYNPO-201ENST00000307662 CALB1P05937 261 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 HIC1Q14526 733 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 KCNB1Q14721 858 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 SLFN12LQ6IEE8 588 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 NLGN1Q8N2Q7 840 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 APOL6Q9BWW8 343 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 NBPF3Q9H094 633 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 INTS2Q9H0H0 1204 aaKnown RBP18.47■□□□□ 0.55
SYNPO-201ENST00000307662 CYP26B1Q9NR63 512 aa18.47■□□□□ 0.55
SYNPO-201ENST00000307662 GCLMP48507 274 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 HDAC4P56524 1084 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 NYAP1Q6ZVC0 841 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 LONP2Q86WA8 852 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms