RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 JCADQ9P266 1359 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 PDXKO00764 312 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 SH2B2O14492 632 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 TM9SF1O15321 606 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 ORC4O43929 436 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 SLC9A1P19634 815 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 ST13P50502 369 aaKnown RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 IRAK1P51617 712 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 NEK2P51955 445 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 GUCY2DQ02846 1103 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 LAMC2Q13753 1193 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 KARSQ15046 597 aaKnown RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 NXNQ6DKJ4 435 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 TBRG4Q969Z0 631 aaKnown RBP eCLIP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 OTUB1Q96FW1 271 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 ACAP3Q96P50 834 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 GOLPH3LQ9H4A5 285 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 FETUBQ9UGM5 382 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 TRMT112Q9UI30 125 aaKnown RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 IVNS1ABPQ9Y6Y0 642 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 M0R3G1 203 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 NOP56O00567 594 aaKnown RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 SLC22A2O15244 555 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 PSMD3O43242 534 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 MTRF1O75570 445 aaKnown RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 ABHD2P08910 425 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 ATF7P17544 494 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 ACAT1P24752 427 aaKnown RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 PSMC2P35998 433 aaKnown RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 MED21Q13503 144 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 CCDC144BQ3MJ40 725 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 C11orf63Q6NUN7 778 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 OTUD6AQ7L8S5 288 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 SYT2Q8N9I0 419 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 ZFAND2BQ8WV99 257 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 CCT8L2Q96SF2 557 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 SLC5A4Q9NY91 659 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 C6orf229H3BNL8 230 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 GADD45BO75293 160 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 HAUS5O94927 633 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 LDHAP00338 332 aaKnown RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 ALOX5P09917 674 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 GZMAP12544 262 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 CASP2P42575 452 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 IL1RL1Q01638 556 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 LUZP2Q86TE4 346 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 CRLF3Q8IUI8 442 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 PDPRQ8NCN5 879 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 ZFP91Q96JP5 570 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 CYTH2Q99418 400 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 MUC13Q9H3R2 512 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 PALMDQ9NP74 551 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 DISC1Q9NRI5 854 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 DKK3Q9UBP4 350 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 GMEB1Q9Y692 573 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 MAP3K19Q56UN5 1328 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 ADGRB1O14514 1584 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 XPOTO43592 962 aaKnown RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 TJP3O95049 919 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 RAPGEF3O95398 923 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 S100A1P23297 94 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 HNRNPH3P31942 346 aaKnown RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 STX17P56962 302 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 RAB44Q7Z6P3 723 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 KRT12Q99456 494 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 PPRC1Q5VV67 1664 aaKnown RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 H3BQF6 201 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 MYO1FO00160 1098 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 BACH1O14867 736 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 RHOBTB3O94955 611 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 TTLL1O95922 423 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 CCDC159P0C7I6 412 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 LSP1P33241 339 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 PPARGP37231 505 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 ABCE1P61221 599 aaKnown RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 LMBR1LQ6UX01 489 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 ANKRD13CQ8N6S4 541 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 PI4K2BQ8TCG2 481 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 CNOT6LQ96LI5 555 aaKnown RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 RANBP17Q9H2T7 1088 aaKnown RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 ANKHQ9HCJ1 492 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 PRDM4Q9UKN5 801 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 SLIT3O75094 1523 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 MCF2P10911 925 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 ADSLP30566 484 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 COPS2P61201 443 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 DLG4P78352 724 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 PTK2Q05397 1052 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 KRT81Q14533 505 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 LBRQ14739 615 aaKnown RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 PTGISQ16647 500 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 EMC10Q5UCC4 262 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 CABP7Q86V35 215 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 TRIM69Q86WT6 500 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 MB21D1Q8N884 522 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 VPS37AQ8NEZ2 397 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 NHEJ1Q9H9Q4 299 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 WHRNQ9P202 907 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 FHOD1Q9Y613 1164 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 RPLP2P05387 115 aaKnown RBP5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms