RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 TDP2O95551 362 aa16.51■□□□□ 0.23
SHH-201ENST00000297261 ASNSP08243 561 aa16.51■□□□□ 0.23
SHH-201ENST00000297261 DLATP10515 647 aaKnown RBP16.51■□□□□ 0.23
SHH-201ENST00000297261 TPD52P55327 224 aaPredicted RBP16.51■□□□□ 0.23
SHH-201ENST00000297261 RASA3Q14644 834 aa16.51■□□□□ 0.23
SHH-201ENST00000297261 KCNQ5Q9NR82 932 aa16.51■□□□□ 0.23
SHH-201ENST00000297261 ESRRAP11474 423 aaPredicted RBP16.51■□□□□ 0.23
SHH-201ENST00000297261 ERFP50548 548 aa16.51■□□□□ 0.23
SHH-201ENST00000297261 MYL7Q01449 175 aa16.51■□□□□ 0.23
SHH-201ENST00000297261 BFSP1Q12934 665 aa16.51■□□□□ 0.23
SHH-201ENST00000297261 KIF2BQ8N4N8 673 aa16.51■□□□□ 0.23
SHH-201ENST00000297261 RAB21Q9UL25 225 aa16.51■□□□□ 0.23
SHH-201ENST00000297261 FAF1Q9UNN5 650 aaPredicted RBP16.51■□□□□ 0.23
SHH-201ENST00000297261 MAP3K7O43318 606 aa16.51■□□□□ 0.23
SHH-201ENST00000297261 KCNH2Q12809 1159 aa16.51■□□□□ 0.23
SHH-201ENST00000297261 GOLPH3Q9H4A6 298 aa16.51■□□□□ 0.23
SHH-201ENST00000297261 SCAF8Q9UPN6 1271 aaKnown RBP16.51■□□□□ 0.23
SHH-201ENST00000297261 STK24Q9Y6E0 443 aa16.51■□□□□ 0.23
SHH-201ENST00000297261 LRP6O75581 1613 aa16.5■□□□□ 0.23
SHH-201ENST00000297261 A0A0G2JND7 137 aa16.5■□□□□ 0.23
SHH-201ENST00000297261 PLEKP08567 350 aaPredicted RBP16.5■□□□□ 0.23
SHH-201ENST00000297261 RSBN1LQ6PCB5 846 aaPredicted RBP16.5■□□□□ 0.23
SHH-201ENST00000297261 NUF2Q9BZD4 464 aa16.5■□□□□ 0.23
SHH-201ENST00000297261 HPSEQ9Y251 543 aa16.5■□□□□ 0.23
SHH-201ENST00000297261 TTI1O43156 1089 aa16.5■□□□□ 0.23
SHH-201ENST00000297261 RAD51CO43502 376 aa16.5■□□□□ 0.23
SHH-201ENST00000297261 PLA2G4BP0C869 781 aa16.5■□□□□ 0.23
SHH-201ENST00000297261 PSMC2P35998 433 aaKnown RBP16.5■□□□□ 0.23
SHH-201ENST00000297261 BBOF1Q8ND07 529 aa16.5■□□□□ 0.23
SHH-201ENST00000297261 MDM1Q8TC05 714 aa16.5■□□□□ 0.23
SHH-201ENST00000297261 RAB20Q9NX57 234 aa16.5■□□□□ 0.23
SHH-201ENST00000297261 TESPA1A2RU30 521 aaPredicted RBP16.5■□□□□ 0.23
SHH-201ENST00000297261 PPP1R3GB7ZBB8 358 aa16.5■□□□□ 0.23
SHH-201ENST00000297261 RASA4BC9J798 803 aa16.5■□□□□ 0.23
SHH-201ENST00000297261 RASA4O43374 803 aa16.5■□□□□ 0.23
SHH-201ENST00000297261 MAPK4P31152 587 aa16.5■□□□□ 0.23
SHH-201ENST00000297261 STK4Q13043 487 aa16.5■□□□□ 0.23
SHH-201ENST00000297261 C15orf52Q6ZUT6 534 aaKnown RBP16.5■□□□□ 0.23
SHH-201ENST00000297261 SLC51AQ86UW1 340 aa16.5■□□□□ 0.23
SHH-201ENST00000297261 NSMCE1Q8WV22 266 aa16.5■□□□□ 0.23
SHH-201ENST00000297261 LRRC37BQ96QE4 947 aa16.5■□□□□ 0.23
SHH-201ENST00000297261 NUDCD1Q96RS6 583 aa16.5■□□□□ 0.23
SHH-201ENST00000297261 RABGAP1Q9Y3P9 1069 aa16.5■□□□□ 0.23
SHH-201ENST00000297261 LAMB4A4D0S4 1761 aa16.5■□□□□ 0.23
SHH-201ENST00000297261 GRID2IPA4D2P6 1211 aa16.49■□□□□ 0.23
SHH-201ENST00000297261 PALM3A6NDB9 673 aaPredicted RBP16.49■□□□□ 0.23
SHH-201ENST00000297261 K7ENM7 598 aa16.49■□□□□ 0.23
SHH-201ENST00000297261 MMGT1Q8N4V1 131 aa16.49■□□□□ 0.23
SHH-201ENST00000297261 DYDC2Q96IM9 177 aa16.49■□□□□ 0.23
SHH-201ENST00000297261 ZNF408Q9H9D4 720 aa16.49■□□□□ 0.23
SHH-201ENST00000297261 HERC5Q9UII4 1024 aaKnown RBP16.49■□□□□ 0.23
SHH-201ENST00000297261 NHSL1Q5SYE7 1610 aa16.49■□□□□ 0.23
SHH-201ENST00000297261 DOT1LQ8TEK3 1739 aa16.49■□□□□ 0.23
SHH-201ENST00000297261 CHN1P15882 459 aa16.49■□□□□ 0.23
SHH-201ENST00000297261 YWHAGP61981 247 aaKnown RBP eCLIP16.49■□□□□ 0.23
SHH-201ENST00000297261 SH3GL3Q99963 347 aa16.49■□□□□ 0.23
SHH-201ENST00000297261 DCTN4Q9UJW0 460 aa16.49■□□□□ 0.23
SHH-201ENST00000297261 MAP2K7O14733 419 aa16.49■□□□□ 0.23
SHH-201ENST00000297261 PSMD2Q13200 908 aa16.49■□□□□ 0.23
SHH-201ENST00000297261 PRMT6Q96LA8 375 aaPredicted RBP16.49■□□□□ 0.23
SHH-201ENST00000297261 ZDHHC15Q96MV8 337 aa16.49■□□□□ 0.23
SHH-201ENST00000297261 PRMT1Q99873 361 aaKnown RBP16.49■□□□□ 0.23
SHH-201ENST00000297261 UBE2TQ9NPD8 197 aaPredicted RBP16.49■□□□□ 0.23
SHH-201ENST00000297261 IRAK4Q9NWZ3 460 aa16.49■□□□□ 0.23
SHH-201ENST00000297261 STOML1Q9UBI4 398 aa16.49■□□□□ 0.23
SHH-201ENST00000297261 EXOC7Q9UPT5 735 aa16.49■□□□□ 0.23
SHH-201ENST00000297261 DCAF8L1A6NGE4 600 aa16.49■□□□□ 0.23
SHH-201ENST00000297261 TCP11X1B4DZS4 312 aa16.49■□□□□ 0.23
SHH-201ENST00000297261 PODXLO00592 558 aa16.49■□□□□ 0.23
SHH-201ENST00000297261 ENTPD3O75355 529 aa16.49■□□□□ 0.23
SHH-201ENST00000297261 TEX2Q8IWB9 1127 aa16.49■□□□□ 0.23
SHH-201ENST00000297261 HIPK4Q8NE63 616 aa16.49■□□□□ 0.23
SHH-201ENST00000297261 XPO6Q96QU8 1125 aaKnown RBP16.49■□□□□ 0.23
SHH-201ENST00000297261 DDX4Q9NQI0 724 aaKnown RBP16.49■□□□□ 0.23
SHH-201ENST00000297261 CAPN6Q9Y6Q1 641 aa16.49■□□□□ 0.23
SHH-201ENST00000297261 SCP2P22307 547 aa16.48■□□□□ 0.23
SHH-201ENST00000297261 MAN1A1P33908 653 aa16.48■□□□□ 0.23
SHH-201ENST00000297261 SH3BGRP55822 239 aaPredicted RBP16.48■□□□□ 0.23
SHH-201ENST00000297261 RNASELQ05823 741 aaKnown RBP16.48■□□□□ 0.23
SHH-201ENST00000297261 R3HDM1Q15032 1099 aaKnown RBP16.48■□□□□ 0.23
SHH-201ENST00000297261 TMCO4Q5TGY1 634 aa16.48■□□□□ 0.23
SHH-201ENST00000297261 PDXDC1Q6P996 788 aa16.48■□□□□ 0.23
SHH-201ENST00000297261 MIER3Q7Z3K6 550 aa16.48■□□□□ 0.23
SHH-201ENST00000297261 MPHOSPH6Q99547 160 aaKnown RBP16.48■□□□□ 0.23
SHH-201ENST00000297261 TRIM51Q9BSJ1 452 aa16.48■□□□□ 0.23
SHH-201ENST00000297261 PCIF1Q9H4Z3 704 aa16.48■□□□□ 0.23
SHH-201ENST00000297261 SFI1A8K8P3 1242 aa16.48■□□□□ 0.23
SHH-201ENST00000297261 GYG2O15488 501 aa16.48■□□□□ 0.23
SHH-201ENST00000297261 NDUFB10O96000 172 aa16.48■□□□□ 0.23
SHH-201ENST00000297261 BYSLQ13895 437 aaKnown RBP16.48■□□□□ 0.23
SHH-201ENST00000297261 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.48■□□□□ 0.23
SHH-201ENST00000297261 PPP1R18Q6NYC8 613 aa16.48■□□□□ 0.23
SHH-201ENST00000297261 SMC1BQ8NDV3 1235 aa16.48■□□□□ 0.23
SHH-201ENST00000297261 TGS1Q96RS0 853 aaKnown RBP16.48■□□□□ 0.23
SHH-201ENST00000297261 ZNF70Q9UC06 446 aaPredicted RBP16.48■□□□□ 0.23
SHH-201ENST00000297261 NSFP46459 744 aaKnown RBP16.48■□□□□ 0.23
SHH-201ENST00000297261 IRX1P78414 480 aaPredicted RBP16.48■□□□□ 0.23
SHH-201ENST00000297261 LONP2Q86WA8 852 aa16.48■□□□□ 0.23
SHH-201ENST00000297261 FAM163AQ96GL9 167 aaPredicted RBP16.48■□□□□ 0.23
SHH-201ENST00000297261 TRIM9Q9C026 710 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms