RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 TTYH1Q9H313 450 aaPredicted RBP14.85□□□□□ -0.03
VPS28-201ENST00000292510 MINDY3Q9H8M7 445 aa14.85□□□□□ -0.03
VPS28-201ENST00000292510 IFT122Q9HBG6 1241 aa14.85□□□□□ -0.03
VPS28-201ENST00000292510 CHD7Q9P2D1 2997 aa14.85□□□□□ -0.03
VPS28-201ENST00000292510 MSRAQ9UJ68 235 aa14.85□□□□□ -0.03
VPS28-201ENST00000292510 PCDHA11Q9Y5I1 949 aa14.85□□□□□ -0.03
VPS28-201ENST00000292510 MYH15Q9Y2K3 1946 aa14.85□□□□□ -0.03
VPS28-201ENST00000292510 GBF1Q92538 1859 aa14.84□□□□□ -0.03
VPS28-201ENST00000292510 LCHNA4D1U4 455 aa14.84□□□□□ -0.03
VPS28-201ENST00000292510 SPTLC2O15270 562 aa14.84□□□□□ -0.03
VPS28-201ENST00000292510 TLL1O43897 1013 aa14.84□□□□□ -0.03
VPS28-201ENST00000292510 SSBP05455 408 aaKnown RBP eCLIP14.84□□□□□ -0.03
VPS28-201ENST00000292510 CA3P07451 260 aa14.84□□□□□ -0.03
VPS28-201ENST00000292510 ZNF697Q5TEC3 545 aa14.84□□□□□ -0.03
VPS28-201ENST00000292510 DEFB123Q8N688 67 aa14.84□□□□□ -0.03
VPS28-201ENST00000292510 KRI1Q8N9T8 703 aaKnown RBP14.84□□□□□ -0.03
VPS28-201ENST00000292510 MCPH1Q8NEM0 835 aa14.84□□□□□ -0.03
VPS28-201ENST00000292510 BSNDQ8WZ55 320 aa14.84□□□□□ -0.03
VPS28-201ENST00000292510 SYMPKQ92797 1274 aaKnown RBP14.84□□□□□ -0.03
VPS28-201ENST00000292510 TOP1MTQ969P6 601 aa14.84□□□□□ -0.03
VPS28-201ENST00000292510 CALML4Q96GE6 196 aa14.84□□□□□ -0.03
VPS28-201ENST00000292510 ADAM2Q99965 735 aa14.84□□□□□ -0.03
VPS28-201ENST00000292510 RUSC1Q9BVN2 902 aa14.84□□□□□ -0.03
VPS28-201ENST00000292510 NT5C3AQ9H0P0 336 aa14.84□□□□□ -0.03
VPS28-201ENST00000292510 TSPYL2Q9H2G4 693 aaPredicted RBP14.84□□□□□ -0.03
VPS28-201ENST00000292510 DENND3A2RUS2 1198 aa14.83□□□□□ -0.04
VPS28-201ENST00000292510 ASAP2O43150 1006 aa14.83□□□□□ -0.04
VPS28-201ENST00000292510 PLCG1P19174 1290 aa14.83□□□□□ -0.04
VPS28-201ENST00000292510 SFPQP23246 707 aaKnown RBP eCLIP14.83□□□□□ -0.04
VPS28-201ENST00000292510 DSC3Q14574 896 aa14.83□□□□□ -0.04
VPS28-201ENST00000292510 MXD4Q14582 209 aaPredicted RBP14.83□□□□□ -0.04
VPS28-201ENST00000292510 ODR4Q5SWX8 454 aa14.83□□□□□ -0.04
VPS28-201ENST00000292510 RINT1Q6NUQ1 792 aa14.83□□□□□ -0.04
VPS28-201ENST00000292510 GPR153Q6NV75 609 aa14.83□□□□□ -0.04
VPS28-201ENST00000292510 SPRED2Q7Z698 418 aa14.83□□□□□ -0.04
VPS28-201ENST00000292510 RASSF8Q8NHQ8 419 aa14.83□□□□□ -0.04
VPS28-201ENST00000292510 MORC2Q9Y6X9 1032 aaPredicted RBP14.83□□□□□ -0.04
VPS28-201ENST00000292510 YEATS4O95619 227 aa14.82□□□□□ -0.04
VPS28-201ENST00000292510 PLA2G4BP0C869 781 aa14.82□□□□□ -0.04
VPS28-201ENST00000292510 PHKA2P46019 1235 aa14.82□□□□□ -0.04
VPS28-201ENST00000292510 SLC12A3P55017 1021 aa14.82□□□□□ -0.04
VPS28-201ENST00000292510 PTENP60484 403 aa14.82□□□□□ -0.04
VPS28-201ENST00000292510 RAD51AP2Q09MP3 1159 aa14.82□□□□□ -0.04
VPS28-201ENST00000292510 DHX8Q14562 1220 aaKnown RBP14.82□□□□□ -0.04
VPS28-201ENST00000292510 PPP2R2DQ66LE6 453 aa14.82□□□□□ -0.04
VPS28-201ENST00000292510 CATSPER4Q7RTX7 472 aa14.82□□□□□ -0.04
VPS28-201ENST00000292510 SRGAP1Q7Z6B7 1085 aa14.82□□□□□ -0.04
VPS28-201ENST00000292510 SYT2Q8N9I0 419 aaPredicted RBP14.82□□□□□ -0.04
VPS28-201ENST00000292510 RAD9AQ99638 391 aa14.82□□□□□ -0.04
VPS28-201ENST00000292510 INO80BQ9C086 356 aaPredicted RBP14.82□□□□□ -0.04
VPS28-201ENST00000292510 CCSER1Q9C0I3 900 aa14.82□□□□□ -0.04
VPS28-201ENST00000292510 SEMA6BQ9H3T3 888 aa14.82□□□□□ -0.04
VPS28-201ENST00000292510 ZNF576Q9H609 170 aa14.82□□□□□ -0.04
VPS28-201ENST00000292510 SLC28A3Q9HAS3 691 aa14.82□□□□□ -0.04
VPS28-201ENST00000292510 RGS18Q9NS28 235 aa14.82□□□□□ -0.04
VPS28-201ENST00000292510 BLOC1S4Q9NUP1 217 aa14.82□□□□□ -0.04
VPS28-201ENST00000292510 NPHP3-ACAD11A0A0J9YXS1 232 aa14.81□□□□□ -0.04
VPS28-201ENST00000292510 LRRIQ4A6NIV6 560 aa14.81□□□□□ -0.04
VPS28-201ENST00000292510 C9IYK1 514 aa14.81□□□□□ -0.04
VPS28-201ENST00000292510 SLC26A4O43511 780 aa14.81□□□□□ -0.04
VPS28-201ENST00000292510 HIP1RO75146 1068 aa14.81□□□□□ -0.04
VPS28-201ENST00000292510 PPP6R2O75170 966 aa14.81□□□□□ -0.04
VPS28-201ENST00000292510 ZSCAN20P17040 1043 aaPredicted RBP14.81□□□□□ -0.04
VPS28-201ENST00000292510 GATMP50440 423 aa14.81□□□□□ -0.04
VPS28-201ENST00000292510 HTRA4P83105 476 aaPredicted RBP14.81□□□□□ -0.04
VPS28-201ENST00000292510 MAPK7Q13164 816 aa14.81□□□□□ -0.04
VPS28-201ENST00000292510 TFDP1Q14186 410 aa14.81□□□□□ -0.04
VPS28-201ENST00000292510 C1orf186Q6ZWK4 172 aa14.81□□□□□ -0.04
VPS28-201ENST00000292510 DAW1Q8N136 415 aa14.81□□□□□ -0.04
VPS28-201ENST00000292510 CRIPAKQ8N1N5 446 aa14.81□□□□□ -0.04
VPS28-201ENST00000292510 YME1L1Q96TA2 773 aa14.81□□□□□ -0.04
VPS28-201ENST00000292510 CERS4Q9HA82 394 aa14.81□□□□□ -0.04
VPS28-201ENST00000292510 PIN4Q9Y237 131 aaKnown RBP14.81□□□□□ -0.04
VPS28-201ENST00000292510 TTC3P53804 2025 aa14.8□□□□□ -0.04
VPS28-201ENST00000292510 A0A087X0B3 334 aa14.8□□□□□ -0.04
VPS28-201ENST00000292510 SFI1A8K8P3 1242 aa14.8□□□□□ -0.04
VPS28-201ENST00000292510 INO80B-WBP1J3KQ70 363 aa14.8□□□□□ -0.04
VPS28-201ENST00000292510 NCLP19338 710 aaKnown RBP14.8□□□□□ -0.04
VPS28-201ENST00000292510 DDIT3P35638 169 aa14.8□□□□□ -0.04
VPS28-201ENST00000292510 SARSP49591 514 aaKnown RBP14.8□□□□□ -0.04
VPS28-201ENST00000292510 CACNB1Q02641 598 aaPredicted RBP14.8□□□□□ -0.04
VPS28-201ENST00000292510 TAP1Q03518 808 aa14.8□□□□□ -0.04
VPS28-201ENST00000292510 MBTD1Q05BQ5 628 aa14.8□□□□□ -0.04
VPS28-201ENST00000292510 MCM6Q14566 821 aa14.8□□□□□ -0.04
VPS28-201ENST00000292510 GRIN2CQ14957 1233 aa14.8□□□□□ -0.04
VPS28-201ENST00000292510 SLC24A5Q71RS6 500 aa14.8□□□□□ -0.04
VPS28-201ENST00000292510 NPAS4Q8IUM7 802 aa14.8□□□□□ -0.04
VPS28-201ENST00000292510 KCTD17Q8N5Z5 321 aa14.8□□□□□ -0.04
VPS28-201ENST00000292510 RAD54LQ92698 747 aa14.8□□□□□ -0.04
VPS28-201ENST00000292510 KIFAP3Q92845 792 aa14.8□□□□□ -0.04
VPS28-201ENST00000292510 KIFC3Q9BVG8 833 aa14.8□□□□□ -0.04
VPS28-201ENST00000292510 PANK2Q9BZ23 570 aa14.8□□□□□ -0.04
VPS28-201ENST00000292510 C1orf112Q9NSG2 853 aa14.8□□□□□ -0.04
VPS28-201ENST00000292510 INSL6Q9Y581 213 aa14.8□□□□□ -0.04
VPS28-201ENST00000292510 TMEM265A0A087WTH1 108 aa14.79□□□□□ -0.04
VPS28-201ENST00000292510 LINC01553A4QN01 128 aa14.79□□□□□ -0.04
VPS28-201ENST00000292510 HOXA11P31270 313 aaPredicted RBP14.79□□□□□ -0.04
VPS28-201ENST00000292510 TXLNAP40222 546 aa14.79□□□□□ -0.04
VPS28-201ENST00000292510 ME1P48163 572 aa14.79□□□□□ -0.04
VPS28-201ENST00000292510 FAM189BP81408 668 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms