RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 VN1R2Q8NFZ6 395 aa14.33□□□□□ -0.12
CD44-203ENST00000278386 NLRP4Q96MN2 994 aa14.33□□□□□ -0.12
CD44-203ENST00000278386 FDXACB1Q9BRP7 624 aaPredicted RBP14.33□□□□□ -0.12
CD44-203ENST00000278386 MRPL9Q9BYD2 267 aaKnown RBP14.33□□□□□ -0.12
CD44-203ENST00000278386 SLKQ9H2G2 1235 aaPredicted RBP14.33□□□□□ -0.12
CD44-203ENST00000278386 PIN4Q9Y237 131 aaKnown RBP14.33□□□□□ -0.12
CD44-203ENST00000278386 MUC6Q6W4X9 2439 aa14.33□□□□□ -0.12
CD44-203ENST00000278386 TECTAO75443 2155 aa14.32□□□□□ -0.12
CD44-203ENST00000278386 MARCH6O60337 910 aa14.32□□□□□ -0.12
CD44-203ENST00000278386 NEFLP07196 543 aa14.32□□□□□ -0.12
CD44-203ENST00000278386 TECP42680 631 aa14.32□□□□□ -0.12
CD44-203ENST00000278386 PSMC5P62195 406 aa14.32□□□□□ -0.12
CD44-203ENST00000278386 CDC42EP1Q00587 391 aa14.32□□□□□ -0.12
CD44-203ENST00000278386 SCRN1Q12765 414 aa14.32□□□□□ -0.12
CD44-203ENST00000278386 HERC4Q5GLZ8 1057 aaPredicted RBP14.32□□□□□ -0.12
CD44-203ENST00000278386 ZNF410Q86VK4 478 aa14.32□□□□□ -0.12
CD44-203ENST00000278386 RPGRIP1Q96KN7 1286 aa14.32□□□□□ -0.12
CD44-203ENST00000278386 MBOAT7Q96N66 472 aa14.32□□□□□ -0.12
CD44-203ENST00000278386 JPH2Q9BR39 696 aaPredicted RBP14.32□□□□□ -0.12
CD44-203ENST00000278386 PHF7Q9BWX1 381 aaPredicted RBP14.32□□□□□ -0.12
CD44-203ENST00000278386 NIFKQ9BYG3 293 aaKnown RBP14.32□□□□□ -0.12
CD44-203ENST00000278386 INO80BQ9C086 356 aaPredicted RBP14.32□□□□□ -0.12
CD44-203ENST00000278386 NGRNQ9NPE2 291 aaKnown RBP14.32□□□□□ -0.12
CD44-203ENST00000278386 SPG21Q9NZD8 308 aa14.32□□□□□ -0.12
CD44-203ENST00000278386 SUCLA2Q9P2R7 463 aaPredicted RBP14.32□□□□□ -0.12
CD44-203ENST00000278386 STK36Q9NRP7 1315 aa14.32□□□□□ -0.12
CD44-203ENST00000278386 ZNF318Q5VUA4 2279 aa14.31□□□□□ -0.12
CD44-203ENST00000278386 A0A0U1RQF3 1178 aa14.31□□□□□ -0.12
CD44-203ENST00000278386 HIDE1A8MVS5 230 aa14.31□□□□□ -0.12
CD44-203ENST00000278386 CCNT1O60563 726 aaKnown RBP14.31□□□□□ -0.12
CD44-203ENST00000278386 ZC3H11AO75152 810 aaKnown RBP eCLIP14.31□□□□□ -0.12
CD44-203ENST00000278386 EOMESO95936 686 aa14.31□□□□□ -0.12
CD44-203ENST00000278386 ATF7P17544 494 aaPredicted RBP14.31□□□□□ -0.12
CD44-203ENST00000278386 SMC1AQ14683 1233 aaKnown RBP14.31□□□□□ -0.12
CD44-203ENST00000278386 LONRF3Q496Y0 759 aa14.31□□□□□ -0.12
CD44-203ENST00000278386 B3GNT9Q6UX72 402 aa14.31□□□□□ -0.12
CD44-203ENST00000278386 HFE2Q6ZVN8 426 aa14.31□□□□□ -0.12
CD44-203ENST00000278386 CATSPER4Q7RTX7 472 aa14.31□□□□□ -0.12
CD44-203ENST00000278386 NEK8Q86SG6 692 aa14.31□□□□□ -0.12
CD44-203ENST00000278386 PHF20Q9BVI0 1012 aa14.31□□□□□ -0.12
CD44-203ENST00000278386 APOL5Q9BWW9 433 aa14.31□□□□□ -0.12
CD44-203ENST00000278386 BMP2KQ9NSY1 1161 aaPredicted RBP14.31□□□□□ -0.12
CD44-203ENST00000278386 INPP5FQ9Y2H2 1132 aa14.31□□□□□ -0.12
CD44-203ENST00000278386 KMT2EQ8IZD2 1858 aa14.31□□□□□ -0.12
CD44-203ENST00000278386 TDRD15B5MCY1 1934 aaKnown RBP14.31□□□□□ -0.12
CD44-203ENST00000278386 IGKV6-21A0A0C4DH24 114 aa14.3□□□□□ -0.12
CD44-203ENST00000278386 LOC730098B7Z3J9 87 aa14.3□□□□□ -0.12
CD44-203ENST00000278386 NT5C1B-RDH14C9J2C7 533 aa14.3□□□□□ -0.12
CD44-203ENST00000278386 EML1O00423 815 aa14.3□□□□□ -0.12
CD44-203ENST00000278386 DKC1O60832 514 aaKnown RBP eCLIP14.3□□□□□ -0.12
CD44-203ENST00000278386 DTNBO60941 627 aa14.3□□□□□ -0.12
CD44-203ENST00000278386 MAFO75444 373 aaPredicted RBP14.3□□□□□ -0.12
CD44-203ENST00000278386 STBD1O95210 358 aa14.3□□□□□ -0.12
CD44-203ENST00000278386 GCFC2P16383 781 aaKnown RBP14.3□□□□□ -0.12
CD44-203ENST00000278386 HOXD11P31277 338 aaPredicted RBP14.3□□□□□ -0.12
CD44-203ENST00000278386 PHKA2P46019 1235 aa14.3□□□□□ -0.12
CD44-203ENST00000278386 QARSP47897 775 aaKnown RBP14.3□□□□□ -0.12
CD44-203ENST00000278386 ALDH7A1P49419 539 aaKnown RBP14.3□□□□□ -0.12
CD44-203ENST00000278386 POLGP54098 1239 aaPredicted RBP14.3□□□□□ -0.12
CD44-203ENST00000278386 BCAR1P56945 870 aa14.3□□□□□ -0.12
CD44-203ENST00000278386 PPP2R5CQ13362 524 aa14.3□□□□□ -0.12
CD44-203ENST00000278386 NCAPH2Q6IBW4 605 aa14.3□□□□□ -0.12
CD44-203ENST00000278386 ANKRD54Q6NXT1 300 aa14.3□□□□□ -0.12
CD44-203ENST00000278386 PIK3AP1Q6ZUJ8 805 aa14.3□□□□□ -0.12
CD44-203ENST00000278386 ANO5Q75V66 913 aa14.3□□□□□ -0.12
CD44-203ENST00000278386 ZNF598Q86UK7 904 aaKnown RBP14.3□□□□□ -0.12
CD44-203ENST00000278386 KSR1Q8IVT5 923 aa14.3□□□□□ -0.12
CD44-203ENST00000278386 SLC39A11Q8N1S5 342 aa14.3□□□□□ -0.12
CD44-203ENST00000278386 SLC7A3Q8WY07 619 aa14.3□□□□□ -0.12
CD44-203ENST00000278386 LPPQ93052 612 aa14.3□□□□□ -0.12
CD44-203ENST00000278386 TMEM169Q96HH4 297 aa14.3□□□□□ -0.12
CD44-203ENST00000278386 CEP89Q96ST8 783 aa14.3□□□□□ -0.12
CD44-203ENST00000278386 CYP26B1Q9NR63 512 aa14.3□□□□□ -0.12
CD44-203ENST00000278386 CHST12Q9NRB3 414 aa14.3□□□□□ -0.12
CD44-203ENST00000278386 VAV3Q9UKW4 847 aa14.3□□□□□ -0.12
CD44-203ENST00000278386 SKIP12755 728 aa14.29□□□□□ -0.12
CD44-203ENST00000278386 SP100P23497 879 aaPredicted RBP14.29□□□□□ -0.12
CD44-203ENST00000278386 RAB27AP51159 221 aa14.29□□□□□ -0.12
CD44-203ENST00000278386 NPEPPSP55786 919 aa14.29□□□□□ -0.12
CD44-203ENST00000278386 RNASELQ05823 741 aaKnown RBP14.29□□□□□ -0.12
CD44-203ENST00000278386 BMS1Q14692 1282 aaKnown RBP14.29□□□□□ -0.12
CD44-203ENST00000278386 CBX2Q14781 532 aaPredicted RBP14.29□□□□□ -0.12
CD44-203ENST00000278386 GLB1LQ6UWU2 654 aa14.29□□□□□ -0.12
CD44-203ENST00000278386 POTEDQ86YR6 584 aa14.29□□□□□ -0.12
CD44-203ENST00000278386 TMEM87AQ8NBN3 555 aa14.29□□□□□ -0.12
CD44-203ENST00000278386 SUSD6Q92537 303 aa14.29□□□□□ -0.12
CD44-203ENST00000278386 EDAQ92838 391 aa14.29□□□□□ -0.12
CD44-203ENST00000278386 CASP10Q92851 521 aa14.29□□□□□ -0.12
CD44-203ENST00000278386 CEP170P1Q96L14 293 aa14.29□□□□□ -0.12
CD44-203ENST00000278386 MFSD14AQ96MC6 490 aa14.29□□□□□ -0.12
CD44-203ENST00000278386 FAM20AQ96MK3 541 aa14.29□□□□□ -0.12
CD44-203ENST00000278386 NAP1L4Q99733 375 aaKnown RBP14.29□□□□□ -0.12
CD44-203ENST00000278386 LXNQ9BS40 222 aa14.29□□□□□ -0.12
CD44-203ENST00000278386 GBP3Q9H0R5 595 aa14.29□□□□□ -0.12
CD44-203ENST00000278386 BRMS1Q9HCU9 246 aa14.29□□□□□ -0.12
CD44-203ENST00000278386 KCNMB3Q9NPA1 279 aa14.29□□□□□ -0.12
CD44-203ENST00000278386 GJB4Q9NTQ9 266 aa14.29□□□□□ -0.12
CD44-203ENST00000278386 COL4A3BPQ9Y5P4 624 aa14.29□□□□□ -0.12
CD44-203ENST00000278386 TRIOO75962 3097 aa14.28□□□□□ -0.12
CD44-203ENST00000278386 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms