RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 PPP2R5CQ13362 524 aa10.93□□□□□ -0.66
VPS41-201ENST00000265745 ADAM15Q13444 863 aa10.93□□□□□ -0.66
VPS41-201ENST00000265745 ME3Q16798 604 aa10.93□□□□□ -0.66
VPS41-201ENST00000265745 EP400NLQ6ZTU2 488 aa10.93□□□□□ -0.66
VPS41-201ENST00000265745 PIK3AP1Q6ZUJ8 805 aa10.93□□□□□ -0.66
VPS41-201ENST00000265745 NEK8Q86SG6 692 aa10.93□□□□□ -0.66
VPS41-201ENST00000265745 GJD3Q8N144 294 aa10.93□□□□□ -0.66
VPS41-201ENST00000265745 POF1BQ8WVV4 589 aa10.93□□□□□ -0.66
VPS41-201ENST00000265745 HAS1Q92839 578 aa10.93□□□□□ -0.66
VPS41-201ENST00000265745 KHSRPQ92945 711 aaKnown RBP eCLIP10.93□□□□□ -0.662e-6■■□□□ 13.5
VPS41-201ENST00000265745 ZNF668Q96K58 619 aaPredicted RBP10.93□□□□□ -0.66
VPS41-201ENST00000265745 SH2D3AQ9BRG2 576 aa10.93□□□□□ -0.66
VPS41-201ENST00000265745 TYW1Q9NV66 732 aaKnown RBP10.93□□□□□ -0.66
VPS41-201ENST00000265745 VAV3Q9UKW4 847 aa10.93□□□□□ -0.66
VPS41-201ENST00000265745 PCDHB12Q9Y5F1 795 aa10.93□□□□□ -0.66
VPS41-201ENST00000265745 A0A0U1RQF3 1178 aa10.92□□□□□ -0.66
VPS41-201ENST00000265745 TBX3O15119 743 aa10.92□□□□□ -0.66
VPS41-201ENST00000265745 MAFO75444 373 aaPredicted RBP10.92□□□□□ -0.66
VPS41-201ENST00000265745 COL9A1P20849 921 aa10.92□□□□□ -0.66
VPS41-201ENST00000265745 IRS1P35568 1242 aa10.92□□□□□ -0.66
VPS41-201ENST00000265745 QARSP47897 775 aaKnown RBP10.92□□□□□ -0.66
VPS41-201ENST00000265745 DNM2P50570 870 aa10.92□□□□□ -0.66
VPS41-201ENST00000265745 MTERF2Q49AM1 385 aa10.92□□□□□ -0.66
VPS41-201ENST00000265745 EARS2Q5JPH6 523 aaKnown RBP10.92□□□□□ -0.66
VPS41-201ENST00000265745 ANO5Q75V66 913 aa10.92□□□□□ -0.66
VPS41-201ENST00000265745 ECHDC2Q86YB7 292 aa10.92□□□□□ -0.66
VPS41-201ENST00000265745 NECAB1Q8N987 351 aa10.92□□□□□ -0.66
VPS41-201ENST00000265745 NLRP7Q8WX94 980 aa10.92□□□□□ -0.66
VPS41-201ENST00000265745 WASF1Q92558 559 aa10.92□□□□□ -0.66
VPS41-201ENST00000265745 CASD1Q96PB1 797 aa10.92□□□□□ -0.66
VPS41-201ENST00000265745 TMEM117Q9H0C3 514 aa10.92□□□□□ -0.66
VPS41-201ENST00000265745 IGFLR1Q9H665 355 aa10.92□□□□□ -0.66
VPS41-201ENST00000265745 CWH43Q9H720 699 aa10.92□□□□□ -0.66
VPS41-201ENST00000265745 AAASQ9NRG9 546 aa10.92□□□□□ -0.66
VPS41-201ENST00000265745 RNF19AQ9NV58 838 aa10.92□□□□□ -0.66
VPS41-201ENST00000265745 HCSTQ9UBK5 93 aa10.92□□□□□ -0.66
VPS41-201ENST00000265745 SEPT9Q9UHD8 586 aaPredicted RBP10.92□□□□□ -0.66
VPS41-201ENST00000265745 MYO7AQ13402 2215 aa10.92□□□□□ -0.66
VPS41-201ENST00000265745 PI4K2BG5E9Z4 385 aa10.91□□□□□ -0.66
VPS41-201ENST00000265745 LINC01565O15544 149 aa10.91□□□□□ -0.66
VPS41-201ENST00000265745 HOXA2O43364 376 aa10.91□□□□□ -0.66
VPS41-201ENST00000265745 CCNT1O60563 726 aaKnown RBP10.91□□□□□ -0.66
VPS41-201ENST00000265745 CSDE1O75534 798 aaKnown RBP10.91□□□□□ -0.66
VPS41-201ENST00000265745 CSPG5O95196 566 aa10.91□□□□□ -0.66
VPS41-201ENST00000265745 LARGE1O95461 756 aa10.91□□□□□ -0.66
VPS41-201ENST00000265745 P4HBP07237 508 aaKnown RBP10.91□□□□□ -0.66
VPS41-201ENST00000265745 FGFR4P22455 802 aa10.91□□□□□ -0.66
VPS41-201ENST00000265745 UBE3AQ05086 875 aa10.91□□□□□ -0.66
VPS41-201ENST00000265745 NR5A1Q13285 461 aa10.91□□□□□ -0.66
VPS41-201ENST00000265745 LRRC55Q6ZSA7 311 aa10.91□□□□□ -0.66
VPS41-201ENST00000265745 ZNF598Q86UK7 904 aaKnown RBP10.91□□□□□ -0.66
VPS41-201ENST00000265745 PTCD2Q8WV60 388 aaKnown RBP10.91□□□□□ -0.66
VPS41-201ENST00000265745 TNFRSF25Q93038 417 aa10.91□□□□□ -0.66
VPS41-201ENST00000265745 GTF3C6Q969F1 213 aa10.91□□□□□ -0.66
VPS41-201ENST00000265745 PPP2R3CQ969Q6 453 aa10.91□□□□□ -0.66
VPS41-201ENST00000265745 SCLT1Q96NL6 688 aa10.91□□□□□ -0.66
VPS41-201ENST00000265745 NAP1L4Q99733 375 aaKnown RBP10.91□□□□□ -0.66
VPS41-201ENST00000265745 GCOM2Q9BZD3 368 aaPredicted RBP10.91□□□□□ -0.66
VPS41-201ENST00000265745 CYP26B1Q9NR63 512 aa10.91□□□□□ -0.66
VPS41-201ENST00000265745 CHST12Q9NRB3 414 aa10.91□□□□□ -0.66
VPS41-201ENST00000265745 SUCLA2Q9P2R7 463 aaPredicted RBP10.91□□□□□ -0.66
VPS41-201ENST00000265745 WRAP73Q9P2S5 460 aaPredicted RBP10.91□□□□□ -0.66
VPS41-201ENST00000265745 FAM50BQ9Y247 325 aa10.91□□□□□ -0.66
VPS41-201ENST00000265745 A0A087WZ62 844 aa10.9□□□□□ -0.66
VPS41-201ENST00000265745 FAM205CA6NFA0 338 aa10.9□□□□□ -0.66
VPS41-201ENST00000265745 DKC1O60832 514 aaKnown RBP eCLIP10.9□□□□□ -0.66
VPS41-201ENST00000265745 EIF5BO60841 1220 aaKnown RBP10.9□□□□□ -0.66
VPS41-201ENST00000265745 TBX10O75333 385 aa10.9□□□□□ -0.66
VPS41-201ENST00000265745 FGF18O76093 207 aa10.9□□□□□ -0.66
VPS41-201ENST00000265745 EOMESO95936 686 aa10.9□□□□□ -0.66
VPS41-201ENST00000265745 LAG3P18627 525 aa10.9□□□□□ -0.66
VPS41-201ENST00000265745 NEK4P51957 841 aa10.9□□□□□ -0.66
VPS41-201ENST00000265745 NPEPPSP55786 919 aa10.9□□□□□ -0.66
VPS41-201ENST00000265745 ZP2Q05996 745 aa10.9□□□□□ -0.66
VPS41-201ENST00000265745 EPHA7Q15375 998 aa10.9□□□□□ -0.66
VPS41-201ENST00000265745 SMAD2Q15796 467 aaKnown RBP10.9□□□□□ -0.66
VPS41-201ENST00000265745 CSPP1Q1MSJ5 1256 aa10.9□□□□□ -0.66
VPS41-201ENST00000265745 SPOUT1Q5T280 376 aaKnown RBP10.9□□□□□ -0.66
VPS41-201ENST00000265745 PLA2G4FQ68DD2 849 aa10.9□□□□□ -0.66
VPS41-201ENST00000265745 ADGRD2Q7Z7M1 963 aa10.9□□□□□ -0.66
VPS41-201ENST00000265745 ZNF410Q86VK4 478 aa10.9□□□□□ -0.66
VPS41-201ENST00000265745 C4orf19Q8IY42 314 aa10.9□□□□□ -0.66
VPS41-201ENST00000265745 EFHBQ8N7U6 833 aa10.9□□□□□ -0.66
VPS41-201ENST00000265745 COLGALT1Q8NBJ5 622 aa10.9□□□□□ -0.66
VPS41-201ENST00000265745 NSUN7Q8NE18 718 aaKnown RBP10.9□□□□□ -0.66
VPS41-201ENST00000265745 MICAL1Q8TDZ2 1067 aa10.9□□□□□ -0.66
VPS41-201ENST00000265745 FDXACB1Q9BRP7 624 aaPredicted RBP10.9□□□□□ -0.66
VPS41-201ENST00000265745 TRAIPQ9BWF2 469 aa10.9□□□□□ -0.66
VPS41-201ENST00000265745 DACT1Q9NYF0 836 aa10.9□□□□□ -0.66
VPS41-201ENST00000265745 RGL1Q9NZL6 768 aa10.9□□□□□ -0.66
VPS41-201ENST00000265745 CLEC1BQ9P126 229 aa10.9□□□□□ -0.66
VPS41-201ENST00000265745 PRKAG3Q9UGI9 489 aa10.9□□□□□ -0.66
VPS41-201ENST00000265745 PCDHGC5Q9Y5F6 944 aa10.9□□□□□ -0.66
VPS41-201ENST00000265745 KAT6AQ92794 2004 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 BTBD18B2RXH4 712 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 MBTPS2O43462 519 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 MARCH6O60337 910 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 EYA4O95677 639 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 ATF7P17544 494 aaPredicted RBP10.89□□□□□ -0.67
VPS41-201ENST00000265745 SSTR3P32745 418 aaPredicted RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms