RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 ZC3H12CQ9C0D7 883 aaKnown RBP12.94□□□□□ -0.34
USHBP1-201ENST00000252597 CTNNAL1Q9UBT7 734 aa12.94□□□□□ -0.34
USHBP1-201ENST00000252597 NARFQ9UHQ1 456 aa12.94□□□□□ -0.34
USHBP1-201ENST00000252597 DAGLAQ9Y4D2 1042 aa12.94□□□□□ -0.34
USHBP1-201ENST00000252597 CNTNAP4Q9C0A0 1308 aa12.94□□□□□ -0.34
USHBP1-201ENST00000252597 CICQ96RK0 1608 aaPredicted RBP12.93□□□□□ -0.34
USHBP1-201ENST00000252597 DLATP10515 647 aaKnown RBP12.93□□□□□ -0.34
USHBP1-201ENST00000252597 POLD1P28340 1107 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 RXRBP28702 533 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 SMTNP53814 917 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 GIT2Q14161 759 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 SEPT2Q15019 361 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 SPATS2Q86XZ4 545 aaKnown RBP12.93□□□□□ -0.34
USHBP1-201ENST00000252597 JAMLQ86YT9 394 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 ABCF3Q9NUQ8 709 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 RASAL2Q9UJF2 1139 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 SCAF8Q9UPN6 1271 aaKnown RBP12.93□□□□□ -0.34
USHBP1-201ENST00000252597 TCP11X1B4DZS4 312 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 RASGRF2O14827 1237 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 EEF2P13639 858 aaKnown RBP12.93□□□□□ -0.34
USHBP1-201ENST00000252597 BIRC3Q13489 604 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 ZCWPW2Q504Y3 356 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 TRAPPC3LQ5T215 181 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 NT5DC3Q86UY8 548 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 ATG4AQ8WYN0 398 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 ALG3Q92685 438 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 KAT5Q92993 513 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 SGSM3Q96HU1 749 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 DBNDD1Q9H9R9 158 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 FAM114A2Q9NRY5 505 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 AIPL1Q9NZN9 384 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 TCEAL9Q9UHQ7 104 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 TRIM33Q9UPN9 1127 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 TCRBV7S2A1N4TA0A589 114 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 FOXN3O00409 490 aaPredicted RBP12.93□□□□□ -0.34
USHBP1-201ENST00000252597 EDIL3O43854 480 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 KRT5P13647 590 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 TMEM119Q4V9L6 283 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 SEL1L2Q5TEA6 688 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 LNX1Q8TBB1 728 aaPredicted RBP12.93□□□□□ -0.34
USHBP1-201ENST00000252597 SCFD2Q8WU76 684 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 KCTD10Q9H3F6 313 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 RIOX1Q9H6W3 641 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 SWAP70Q9UH65 585 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 ALG6Q9Y672 507 aa12.93□□□□□ -0.34
USHBP1-201ENST00000252597 COL4A1P02462 1669 aa12.92□□□□□ -0.34
USHBP1-201ENST00000252597 A0A1W2PRG0 241 aa12.92□□□□□ -0.34
USHBP1-201ENST00000252597 CCDC188H7C350 402 aa12.92□□□□□ -0.34
USHBP1-201ENST00000252597 PAX7P23759 505 aa12.92□□□□□ -0.34
USHBP1-201ENST00000252597 GRAPQ13588 217 aa12.92□□□□□ -0.34
USHBP1-201ENST00000252597 CBWD6Q4V339 395 aa12.92□□□□□ -0.34
USHBP1-201ENST00000252597 CBWD3Q5JTY5 395 aa12.92□□□□□ -0.34
USHBP1-201ENST00000252597 CBWD5Q5RIA9 395 aa12.92□□□□□ -0.34
USHBP1-201ENST00000252597 FAM182AQ5T1J6 154 aa12.92□□□□□ -0.34
USHBP1-201ENST00000252597 ZNF772Q68DY9 489 aaPredicted RBP12.92□□□□□ -0.34
USHBP1-201ENST00000252597 CCDC137Q6PK04 289 aaKnown RBP12.92□□□□□ -0.34
USHBP1-201ENST00000252597 GRAPLQ8TC17 118 aaPredicted RBP12.92□□□□□ -0.34
USHBP1-201ENST00000252597 KLHL29Q96CT2 875 aa12.92□□□□□ -0.34
USHBP1-201ENST00000252597 DYDC2Q96IM9 177 aa12.92□□□□□ -0.34
USHBP1-201ENST00000252597 DDX23Q9BUQ8 820 aaKnown RBP12.92□□□□□ -0.34
USHBP1-201ENST00000252597 H0Y3Z8 333 aa12.92□□□□□ -0.34
USHBP1-201ENST00000252597 FERP16591 822 aa12.92□□□□□ -0.34
USHBP1-201ENST00000252597 ECHS1P30084 290 aa12.92□□□□□ -0.34
USHBP1-201ENST00000252597 MYL7Q01449 175 aa12.92□□□□□ -0.34
USHBP1-201ENST00000252597 KIAA1755Q5JYT7 1200 aa12.92□□□□□ -0.34
USHBP1-201ENST00000252597 PRUNE1Q86TP1 453 aa12.92□□□□□ -0.34
USHBP1-201ENST00000252597 SLC35C1Q96A29 364 aa12.92□□□□□ -0.34
USHBP1-201ENST00000252597 EDEM3Q9BZQ6 932 aa12.92□□□□□ -0.34
USHBP1-201ENST00000252597 HOMER2Q9NSB8 354 aa12.92□□□□□ -0.34
USHBP1-201ENST00000252597 CCDC169A6NNP5 214 aa12.91□□□□□ -0.34
USHBP1-201ENST00000252597 A8MUI8 341 aa12.91□□□□□ -0.34
USHBP1-201ENST00000252597 FAM86B1E9PN63 330 aa12.91□□□□□ -0.34
USHBP1-201ENST00000252597 EML1O00423 815 aa12.91□□□□□ -0.34
USHBP1-201ENST00000252597 PIAS1O75925 651 aa12.91□□□□□ -0.34
USHBP1-201ENST00000252597 FAM86B2P0C5J1 330 aa12.91□□□□□ -0.34
USHBP1-201ENST00000252597 PSMC2P35998 433 aaKnown RBP12.91□□□□□ -0.34
USHBP1-201ENST00000252597 RPAINQ86UA6 219 aa12.91□□□□□ -0.34
USHBP1-201ENST00000252597 SLC17A8Q8NDX2 589 aa12.91□□□□□ -0.34
USHBP1-201ENST00000252597 SPIRE2Q8WWL2 714 aa12.91□□□□□ -0.34
USHBP1-201ENST00000252597 ERP44Q9BS26 406 aa12.91□□□□□ -0.34
USHBP1-201ENST00000252597 BZW2Q9Y6E2 419 aaKnown RBP12.91□□□□□ -0.34
USHBP1-201ENST00000252597 NEFHP12036 1026 aa12.91□□□□□ -0.34
USHBP1-201ENST00000252597 SESN3P58005 492 aa12.91□□□□□ -0.34
USHBP1-201ENST00000252597 KCNJ2P63252 427 aa12.91□□□□□ -0.34
USHBP1-201ENST00000252597 SLF2Q8IX21 1173 aa12.91□□□□□ -0.34
USHBP1-201ENST00000252597 SRRM1Q8IYB3 904 aaKnown RBP12.91□□□□□ -0.34
USHBP1-201ENST00000252597 RPUSD2Q8IZ73 545 aaKnown RBP12.91□□□□□ -0.34
USHBP1-201ENST00000252597 NOD2Q9HC29 1040 aa12.91□□□□□ -0.34
USHBP1-201ENST00000252597 LRRC4BQ9NT99 713 aa12.91□□□□□ -0.34
USHBP1-201ENST00000252597 SLC12A6Q9UHW9 1150 aa12.91□□□□□ -0.34
USHBP1-201ENST00000252597 CHD4Q14839 1912 aa12.91□□□□□ -0.34
USHBP1-201ENST00000252597 UBOX5O94941 541 aa12.91□□□□□ -0.34
USHBP1-201ENST00000252597 SOX5P35711 763 aa12.91□□□□□ -0.34
USHBP1-201ENST00000252597 GSTA5Q7RTV2 222 aa12.91□□□□□ -0.34
USHBP1-201ENST00000252597 UBL4BQ8N7F7 174 aa12.91□□□□□ -0.34
USHBP1-201ENST00000252597 ACTRT1Q8TDG2 376 aa12.91□□□□□ -0.34
USHBP1-201ENST00000252597 EIF2AK1Q9BQI3 630 aaKnown RBP12.91□□□□□ -0.34
USHBP1-201ENST00000252597 ACTR5Q9H9F9 607 aaPredicted RBP12.91□□□□□ -0.34
USHBP1-201ENST00000252597 WDR91A4D1P6 747 aa12.9□□□□□ -0.34
USHBP1-201ENST00000252597 CCT8L1PA6NM43 557 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms