RNA–Protein interactions for RNA: ENST00000225441.11

RUNDC3A-201, Transcript of RUN domain containing 3A, humanhuman

TSL 1 (best) BASIC

Gene RUNDC3A, Length 1,821 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3A-201ENST00000225441 HOXD13P35453 343 aa27.13■■□□□ 1.93
RUNDC3A-201ENST00000225441 SKOR1P84550 965 aa27.13■■□□□ 1.93
RUNDC3A-201ENST00000225441 SNAPC2Q13487 334 aa27.13■■□□□ 1.93
RUNDC3A-201ENST00000225441 CST9Q5W186 159 aa27.13■■□□□ 1.93
RUNDC3A-201ENST00000225441 FASTKD5Q7L8L6 764 aaKnown RBP27.13■■□□□ 1.93
RUNDC3A-201ENST00000225441 ACTRT1Q8TDG2 376 aa27.13■■□□□ 1.93
RUNDC3A-201ENST00000225441 AGTPBP1Q9UPW5 1226 aa27.13■■□□□ 1.93
RUNDC3A-201ENST00000225441 RABGAP1Q9Y3P9 1069 aa27.13■■□□□ 1.93
RUNDC3A-201ENST00000225441 MYBP10242 640 aa27.13■■□□□ 1.93
RUNDC3A-201ENST00000225441 FERP16591 822 aa27.13■■□□□ 1.93
RUNDC3A-201ENST00000225441 SLC7A5Q01650 507 aa27.13■■□□□ 1.93
RUNDC3A-201ENST00000225441 CACNB1Q02641 598 aaPredicted RBP27.13■■□□□ 1.93
RUNDC3A-201ENST00000225441 PTK2Q05397 1052 aa27.13■■□□□ 1.93
RUNDC3A-201ENST00000225441 USP38Q8NB14 1042 aa27.13■■□□□ 1.93
RUNDC3A-201ENST00000225441 CLEC4DQ8WXI8 215 aa27.13■■□□□ 1.93
RUNDC3A-201ENST00000225441 GDAP1L1Q96MZ0 367 aa27.13■■□□□ 1.93
RUNDC3A-201ENST00000225441 KCND2Q9NZV8 630 aa27.13■■□□□ 1.93
RUNDC3A-201ENST00000225441 NAGPAQ9UK23 515 aa27.13■■□□□ 1.93
RUNDC3A-201ENST00000225441 FAM86B1E9PN63 330 aa27.12■■□□□ 1.93
RUNDC3A-201ENST00000225441 MYO1CO00159 1063 aa27.12■■□□□ 1.93
RUNDC3A-201ENST00000225441 FAM86B2P0C5J1 330 aa27.12■■□□□ 1.93
RUNDC3A-201ENST00000225441 CASP5P51878 434 aa27.12■■□□□ 1.93
RUNDC3A-201ENST00000225441 JAM2P57087 298 aa27.12■■□□□ 1.93
RUNDC3A-201ENST00000225441 PSMC6P62333 389 aa27.12■■□□□ 1.93
RUNDC3A-201ENST00000225441 EMC10Q5UCC4 262 aa27.12■■□□□ 1.93
RUNDC3A-201ENST00000225441 STXBP4Q6ZWJ1 553 aa27.12■■□□□ 1.93
RUNDC3A-201ENST00000225441 SYCE1Q8N0S2 351 aa27.12■■□□□ 1.93
RUNDC3A-201ENST00000225441 PSMB7Q99436 277 aa27.12■■□□□ 1.93
RUNDC3A-201ENST00000225441 ZNF214Q9UL59 606 aaPredicted RBP27.12■■□□□ 1.93
RUNDC3A-201ENST00000225441 ATP2A1O14983 1001 aa27.11■■□□□ 1.93
RUNDC3A-201ENST00000225441 HEXIM1O94992 359 aaKnown RBP27.11■■□□□ 1.93
RUNDC3A-201ENST00000225441 ZNF571Q7Z3V5 609 aaPredicted RBP27.11■■□□□ 1.93
RUNDC3A-201ENST00000225441 EIF2AK1Q9BQI3 630 aaKnown RBP27.11■■□□□ 1.93
RUNDC3A-201ENST00000225441 GPBP1L1Q9HC44 474 aaPredicted RBP27.11■■□□□ 1.93
RUNDC3A-201ENST00000225441 COL11A1P12107 1806 aaPredicted RBP27.11■■□□□ 1.93
RUNDC3A-201ENST00000225441 KIF4AO95239 1232 aa27.11■■□□□ 1.93
RUNDC3A-201ENST00000225441 TMEM132BQ14DG7 1078 aa27.11■■□□□ 1.93
RUNDC3A-201ENST00000225441 IQCKQ8N0W5 287 aa27.11■■□□□ 1.93
RUNDC3A-201ENST00000225441 RIN2Q8WYP3 895 aaPredicted RBP27.11■■□□□ 1.93
RUNDC3A-201ENST00000225441 SLC35C1Q96A29 364 aa27.11■■□□□ 1.93
RUNDC3A-201ENST00000225441 MS4A14Q96JA4 679 aa27.11■■□□□ 1.93
RUNDC3A-201ENST00000225441 FEZ2Q9UHY8 353 aaPredicted RBP27.11■■□□□ 1.93
RUNDC3A-201ENST00000225441 ASTN1O14525 1302 aa27.11■■□□□ 1.93
RUNDC3A-201ENST00000225441 NFIBO00712 420 aa27.1■■□□□ 1.93
RUNDC3A-201ENST00000225441 AKAP3O75969 853 aa27.1■■□□□ 1.93
RUNDC3A-201ENST00000225441 FTCDO95954 541 aa27.1■■□□□ 1.93
RUNDC3A-201ENST00000225441 SLC9A1P19634 815 aa27.1■■□□□ 1.93
RUNDC3A-201ENST00000225441 ZNF76P36508 570 aa27.1■■□□□ 1.93
RUNDC3A-201ENST00000225441 IRX3P78415 501 aaPredicted RBP27.1■■□□□ 1.93
RUNDC3A-201ENST00000225441 SNRNP48Q6IEG0 339 aaKnown RBP27.1■■□□□ 1.93
RUNDC3A-201ENST00000225441 ALKBH5Q6P6C2 394 aaKnown RBP27.1■■□□□ 1.93
RUNDC3A-201ENST00000225441 SLFN11Q7Z7L1 901 aa27.1■■□□□ 1.93
RUNDC3A-201ENST00000225441 MCF2L2Q86YR7 1114 aa27.1■■□□□ 1.93
RUNDC3A-201ENST00000225441 LRRC57Q8N9N7 239 aa27.1■■□□□ 1.93
RUNDC3A-201ENST00000225441 HSD17B14Q9BPX1 270 aa27.1■■□□□ 1.93
RUNDC3A-201ENST00000225441 EHMT1Q9H9B1 1298 aa27.1■■□□□ 1.93
RUNDC3A-201ENST00000225441 TRPM7Q96QT4 1865 aa27.1■■□□□ 1.93
RUNDC3A-201ENST00000225441 CCDC188H7C350 402 aa27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 GLI1P08151 1106 aa27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 HSD17B4P51659 736 aa27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 GHRHRQ02643 423 aa27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 ARID5AQ03989 594 aa27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 CUL1Q13616 776 aa27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 GPAT2Q6NUI2 795 aa27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 BORCS6Q96GS4 357 aa27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 CAPS2Q9BXY5 557 aa27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 RASSF4Q9H2L5 321 aa27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 HOMER2Q9NSB8 354 aa27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 EHD2Q9NZN4 543 aa27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 A0A0G2JMZ2 1700 aa27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 PSMC2P35998 433 aaKnown RBP27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 PPP2R5CQ13362 524 aa27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 DNAJC21Q5F1R6 531 aaKnown RBP27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 CFAP58Q5T655 872 aa27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 RINT1Q6NUQ1 792 aa27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 SCFD2Q8WU76 684 aa27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 TRERF1Q96PN7 1200 aa27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 TEX13BQ9BXU2 312 aa27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 ASCC2Q9H1I8 757 aaPredicted RBP27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 BHMT2Q9H2M3 363 aa27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 EPB41L5Q9HCM4 733 aa27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 SIX2Q9NPC8 291 aa27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 SMARCAL1Q9NZC9 954 aa27.09■■□□□ 1.93
RUNDC3A-201ENST00000225441 H2AFZP0C0S5 128 aa27.08■■□□□ 1.93
RUNDC3A-201ENST00000225441 CCDC172P0C7W6 258 aa27.08■■□□□ 1.93
RUNDC3A-201ENST00000225441 STAT1P42224 750 aa27.08■■□□□ 1.93
RUNDC3A-201ENST00000225441 IRAK1P51617 712 aa27.08■■□□□ 1.93
RUNDC3A-201ENST00000225441 LBX2Q6XYB7 198 aa27.08■■□□□ 1.93
RUNDC3A-201ENST00000225441 H2AFVQ71UI9 128 aa27.08■■□□□ 1.93
RUNDC3A-201ENST00000225441 TSEN2Q8NCE0 465 aaKnown RBP27.08■■□□□ 1.93
RUNDC3A-201ENST00000225441 RNF146Q9NTX7 359 aa27.08■■□□□ 1.93
RUNDC3A-201ENST00000225441 SUCLA2Q9P2R7 463 aaPredicted RBP27.08■■□□□ 1.93
RUNDC3A-201ENST00000225441 RIPK3Q9Y572 518 aa27.08■■□□□ 1.93
RUNDC3A-201ENST00000225441 IGLV3-22A0A075B6J6 115 aa27.07■■□□□ 1.92
RUNDC3A-201ENST00000225441 MEIS1O00470 390 aa27.07■■□□□ 1.92
RUNDC3A-201ENST00000225441 GCNT3O95395 438 aa27.07■■□□□ 1.92
RUNDC3A-201ENST00000225441 GUCY2DQ02846 1103 aa27.07■■□□□ 1.92
RUNDC3A-201ENST00000225441 MYBPC2Q14324 1141 aa27.07■■□□□ 1.92
RUNDC3A-201ENST00000225441 SAMD3Q8N6K7 520 aa27.07■■□□□ 1.92
RUNDC3A-201ENST00000225441 VTI1AQ96AJ9 217 aa27.07■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms