RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 CAMSAP1Q5T5Y3 1602 aa16.04■□□□□ 0.16
SCN1A-222ENST00000642141 NCOA1Q15788 1441 aa16.03■□□□□ 0.16
SCN1A-222ENST00000642141 ABCC5O15440 1437 aa16.02■□□□□ 0.15
SCN1A-222ENST00000642141 FAM50AQ14320 339 aaKnown RBP16.01■□□□□ 0.15
SCN1A-222ENST00000642141 PPARGC1BQ86YN6 1023 aaKnown RBP16.01■□□□□ 0.15
SCN1A-222ENST00000642141 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.01■□□□□ 0.15
SCN1A-222ENST00000642141 PTPRTO14522 1441 aa16.01■□□□□ 0.15
SCN1A-222ENST00000642141 MYO3AQ8NEV4 1616 aa16.01■□□□□ 0.15
SCN1A-222ENST00000642141 PTPN23Q9H3S7 1636 aa16.01■□□□□ 0.15
SCN1A-222ENST00000642141 TNRQ92752 1358 aa16■□□□□ 0.15
SCN1A-222ENST00000642141 KDM5DQ9BY66 1539 aa16■□□□□ 0.15
SCN1A-222ENST00000642141 FGD6Q6ZV73 1430 aa16■□□□□ 0.15
SCN1A-222ENST00000642141 MAST1Q9Y2H9 1570 aa15.99■□□□□ 0.15
SCN1A-222ENST00000642141 CEP170BQ9Y4F5 1589 aaPredicted RBP15.99■□□□□ 0.15
SCN1A-222ENST00000642141 KIF15Q9NS87 1388 aa15.99■□□□□ 0.15
SCN1A-222ENST00000642141 PZPP20742 1482 aa15.97■□□□□ 0.15
SCN1A-222ENST00000642141 DAPK1P53355 1430 aa15.97■□□□□ 0.15
SCN1A-222ENST00000642141 PKD2Q13563 968 aa15.96■□□□□ 0.15
SCN1A-222ENST00000642141 A2ML1A8K2U0 1454 aa15.96■□□□□ 0.14
SCN1A-222ENST00000642141 ZNF335Q9H4Z2 1342 aaPredicted RBP15.95■□□□□ 0.14
SCN1A-222ENST00000642141 DUOX2Q9NRD8 1548 aa15.94■□□□□ 0.14
SCN1A-222ENST00000642141 ABCC3O15438 1527 aa15.94■□□□□ 0.14
SCN1A-222ENST00000642141 ZNF142P52746 1687 aaPredicted RBP15.93■□□□□ 0.14
SCN1A-222ENST00000642141 TCOF1Q13428 1488 aaKnown RBP15.93■□□□□ 0.14
SCN1A-222ENST00000642141 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.93■□□□□ 0.14
SCN1A-222ENST00000642141 DNMT1P26358 1616 aaKnown RBP15.93■□□□□ 0.14
SCN1A-222ENST00000642141 RNF17Q9BXT8 1623 aaKnown RBP15.93■□□□□ 0.14
SCN1A-222ENST00000642141 PLA2R1Q13018 1463 aa15.91■□□□□ 0.14
SCN1A-222ENST00000642141 SHANK2Q9UPX8 1470 aa15.91■□□□□ 0.14
SCN1A-222ENST00000642141 ANKRD30AQ9BXX3 1397 aa15.91■□□□□ 0.14
SCN1A-222ENST00000642141 THEMISQ8N1K5 641 aaPredicted RBP15.91■□□□□ 0.14
SCN1A-222ENST00000642141 CROCC2H7BZ55 1655 aa15.91■□□□□ 0.14
SCN1A-222ENST00000642141 LTBP4Q8N2S1 1624 aa15.9■□□□□ 0.14
SCN1A-222ENST00000642141 MROH1Q8NDA8 1641 aa15.9■□□□□ 0.14
SCN1A-222ENST00000642141 EIF2AK4Q9P2K8 1649 aaKnown RBP15.9■□□□□ 0.14
SCN1A-222ENST00000642141 FAM135AQ9P2D6 1515 aa15.89■□□□□ 0.13
SCN1A-222ENST00000642141 ANKLE2Q86XL3 938 aa15.89■□□□□ 0.13
SCN1A-222ENST00000642141 CEP152O94986 1710 aa15.88■□□□□ 0.13
SCN1A-222ENST00000642141 ITGAEP38570 1179 aa15.88■□□□□ 0.13
SCN1A-222ENST00000642141 CFAP65Q6ZU64 1925 aaKnown RBP15.88■□□□□ 0.13
SCN1A-222ENST00000642141 ERBINQ96RT1 1412 aa15.87■□□□□ 0.13
SCN1A-222ENST00000642141 ERVK-7P63135 1459 aa15.87■□□□□ 0.13
SCN1A-222ENST00000642141 UGGT1Q9NYU2 1555 aa15.87■□□□□ 0.13
SCN1A-222ENST00000642141 NLRP1Q9C000 1473 aa15.86■□□□□ 0.13
SCN1A-222ENST00000642141 KANK1Q14678 1352 aa15.86■□□□□ 0.13
SCN1A-222ENST00000642141 ZC3H13Q5T200 1668 aaKnown RBP15.85■□□□□ 0.13
SCN1A-222ENST00000642141 SPATA31D1Q6ZQQ2 1576 aa15.83■□□□□ 0.13
SCN1A-222ENST00000642141 UBAP1LF5GYI3 381 aa15.83■□□□□ 0.12
SCN1A-222ENST00000642141 PRDM15P57071 1507 aaPredicted RBP15.82■□□□□ 0.12
SCN1A-222ENST00000642141 NEURL4Q96JN8 1562 aa15.82■□□□□ 0.12
SCN1A-222ENST00000642141 STAG3Q9UJ98 1225 aa15.81■□□□□ 0.12
SCN1A-222ENST00000642141 NPHP4O75161 1426 aaPredicted RBP15.8■□□□□ 0.12
SCN1A-222ENST00000642141 POLR1AO95602 1720 aaPredicted RBP15.8■□□□□ 0.12
SCN1A-222ENST00000642141 ANKRD50Q9ULJ7 1429 aa15.79■□□□□ 0.12
SCN1A-222ENST00000642141 LTKP29376 864 aa15.79■□□□□ 0.12
SCN1A-222ENST00000642141 TXNDC2Q86VQ3 553 aa15.79■□□□□ 0.12
SCN1A-222ENST00000642141 SENP3Q9H4L4 574 aaPredicted RBP15.79■□□□□ 0.12
SCN1A-222ENST00000642141 ADGRL2O95490 1459 aa15.78■□□□□ 0.12
SCN1A-222ENST00000642141 ARHGAP31Q2M1Z3 1444 aa15.78■□□□□ 0.12
SCN1A-222ENST00000642141 IDI1Q13907 227 aa15.78■□□□□ 0.12
SCN1A-222ENST00000642141 DEPDC5O75140 1603 aa15.78■□□□□ 0.12
SCN1A-222ENST00000642141 SCAF1Q9H7N4 1312 aaKnown RBP15.77■□□□□ 0.12
SCN1A-222ENST00000642141 PIP4K2BP78356 416 aa15.77■□□□□ 0.12
SCN1A-222ENST00000642141 EID1Q9Y6B2 187 aa15.75■□□□□ 0.11
SCN1A-222ENST00000642141 UBR1Q8IWV7 1749 aa15.74■□□□□ 0.11
SCN1A-222ENST00000642141 MED14O60244 1454 aa15.74■□□□□ 0.11
SCN1A-222ENST00000642141 IQSEC2Q5JU85 1478 aa15.74■□□□□ 0.11
SCN1A-222ENST00000642141 VWDEQ8N2E2 1590 aa15.73■□□□□ 0.11
SCN1A-222ENST00000642141 PIK3C2BO00750 1634 aa15.72■□□□□ 0.11
SCN1A-222ENST00000642141 SCAF11Q99590 1463 aaKnown RBP15.72■□□□□ 0.11
SCN1A-222ENST00000642141 IQGAP1P46940 1657 aa15.72■□□□□ 0.11
SCN1A-222ENST00000642141 LMTK2Q8IWU2 1503 aa15.72■□□□□ 0.11
SCN1A-222ENST00000642141 SYNMO15061 1565 aa15.7■□□□□ 0.1
SCN1A-222ENST00000642141 EFCAB6Q5THR3 1501 aa15.7■□□□□ 0.1
SCN1A-222ENST00000642141 BCANQ96GW7 911 aa15.7■□□□□ 0.1
SCN1A-222ENST00000642141 TMEM2Q9UHN6 1383 aa15.7■□□□□ 0.1
SCN1A-222ENST00000642141 CPS1P31327 1500 aa15.69■□□□□ 0.1
SCN1A-222ENST00000642141 CHGAP10645 457 aaKnown RBP15.69■□□□□ 0.1
SCN1A-222ENST00000642141 SLC26A8Q96RN1 970 aa15.69■□□□□ 0.1
SCN1A-222ENST00000642141 ROCK1Q13464 1354 aa15.69■□□□□ 0.1
SCN1A-222ENST00000642141 DISP3Q9P2K9 1392 aa15.69■□□□□ 0.1
SCN1A-222ENST00000642141 NOS1P29475 1434 aa15.68■□□□□ 0.1
SCN1A-222ENST00000642141 ARHGAP23Q9P227 1491 aa15.68■□□□□ 0.1
SCN1A-222ENST00000642141 TOM1O60784 492 aa15.68■□□□□ 0.1
SCN1A-222ENST00000642141 SLC52A1Q9NWF4 448 aa15.68■□□□□ 0.1
SCN1A-222ENST00000642141 SLIT1O75093 1534 aa15.68■□□□□ 0.1
SCN1A-222ENST00000642141 NUP155O75694 1391 aa15.67■□□□□ 0.1
SCN1A-222ENST00000642141 HSPA1LP34931 641 aa15.66■□□□□ 0.1
SCN1A-222ENST00000642141 NUTM2DQ5VT03 806 aaPredicted RBP15.66■□□□□ 0.1
SCN1A-222ENST00000642141 STRCP1A6NGW2 1772 aa15.65■□□□□ 0.1
SCN1A-222ENST00000642141 RBM33Q96EV2 1170 aaKnown RBP15.65■□□□□ 0.1
SCN1A-222ENST00000642141 LRRC7Q96NW7 1537 aa15.63■□□□□ 0.09
SCN1A-222ENST00000642141 TET3O43151 1660 aa15.63■□□□□ 0.09
SCN1A-222ENST00000642141 UNC13BO14795 1591 aa15.62■□□□□ 0.09
SCN1A-222ENST00000642141 PPP1R15AO75807 674 aaPredicted RBP15.62■□□□□ 0.09
SCN1A-222ENST00000642141 RPRD2Q5VT52 1461 aaKnown RBP15.62■□□□□ 0.09
SCN1A-222ENST00000642141 ADGRB3O60242 1522 aa15.62■□□□□ 0.09
SCN1A-222ENST00000642141 ILDR2Q71H61 639 aa15.61■□□□□ 0.09
SCN1A-222ENST00000642141 E9PCH4 1651 aa15.59■□□□□ 0.09
SCN1A-222ENST00000642141 RRBP1Q9P2E9 1410 aaKnown RBP15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms