RNA–Protein interactions for RNA: ENST00000638076.1

CLN6-224, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best)

Gene CLN6, Length 2,323 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-224ENST00000638076 MAGI2Q86UL8 1455 aa29.82■■■□□ 2.36
CLN6-224ENST00000638076 CARD11Q9BXL7 1154 aa29.81■■■□□ 2.36
CLN6-224ENST00000638076 AFAP1Q8N556 730 aa29.8■■■□□ 2.36
CLN6-224ENST00000638076 SPAG9O60271 1321 aaKnown RBP29.8■■■□□ 2.36
CLN6-224ENST00000638076 BCORL1Q5H9F3 1711 aa29.8■■■□□ 2.36
CLN6-224ENST00000638076 PRKRIP1Q9H875 184 aaPredicted RBP29.79■■■□□ 2.36
CLN6-224ENST00000638076 RTEL1-TNFRSF6BF6WH68 1400 aa29.77■■■□□ 2.36
CLN6-224ENST00000638076 FANCAO15360 1455 aa29.75■■■□□ 2.35
CLN6-224ENST00000638076 ABCA9Q8IUA7 1624 aa29.75■■■□□ 2.35
CLN6-224ENST00000638076 OSCARQ8IYS5 282 aa29.74■■■□□ 2.35
CLN6-224ENST00000638076 ZFYVE16Q7Z3T8 1539 aa29.74■■■□□ 2.35
CLN6-224ENST00000638076 RGL3Q3MIN7 710 aa29.73■■■□□ 2.35
CLN6-224ENST00000638076 ASXL2Q76L83 1435 aa29.73■■■□□ 2.35
CLN6-224ENST00000638076 ARID4BQ4LE39 1312 aaPredicted RBP29.72■■■□□ 2.35
CLN6-224ENST00000638076 POLR3GLQ9BT43 218 aa29.71■■■□□ 2.35
CLN6-224ENST00000638076 ROCK2O75116 1388 aaKnown RBP29.7■■■□□ 2.35
CLN6-224ENST00000638076 ATP10AO60312 1499 aa29.7■■■□□ 2.34
CLN6-224ENST00000638076 CCDC184Q52MB2 194 aa29.7■■■□□ 2.34
CLN6-224ENST00000638076 PRAG1Q86YV5 1406 aa29.69■■■□□ 2.34
CLN6-224ENST00000638076 A2MP01023 1474 aa29.67■■■□□ 2.34
CLN6-224ENST00000638076 ST20-MTHFSA0A0A6YYL1 179 aa29.66■■■□□ 2.34
CLN6-224ENST00000638076 HNRNPUQ00839 825 aaKnown RBP eCLIP29.66■■■□□ 2.34
CLN6-224ENST00000638076 ADGRL1O94910 1474 aa29.65■■■□□ 2.34
CLN6-224ENST00000638076 TRPM1Q7Z4N2 1603 aa29.64■■■□□ 2.33
CLN6-224ENST00000638076 ATP7AQ04656 1500 aa29.64■■■□□ 2.33
CLN6-224ENST00000638076 DHX29Q7Z478 1369 aaKnown RBP29.64■■■□□ 2.33
CLN6-224ENST00000638076 SCAPERQ9BY12 1400 aa29.63■■■□□ 2.33
CLN6-224ENST00000638076 INO80Q9ULG1 1556 aaPredicted RBP29.62■■■□□ 2.33
CLN6-224ENST00000638076 MRS2Q9HD23 443 aa29.61■■■□□ 2.33
CLN6-224ENST00000638076 NPM1P06748 294 aaKnown RBP eCLIP29.61■■■□□ 2.33
CLN6-224ENST00000638076 MYT1LQ9UL68 1186 aa29.58■■■□□ 2.33
CLN6-224ENST00000638076 E9PCH4 1651 aa29.57■■■□□ 2.32
CLN6-224ENST00000638076 NBPF1Q3BBV0 1214 aa29.57■■■□□ 2.32
CLN6-224ENST00000638076 DEPDC5O75140 1603 aa29.56■■■□□ 2.32
CLN6-224ENST00000638076 GPRASP1Q5JY77 1395 aa29.54■■■□□ 2.32
CLN6-224ENST00000638076 FAM9BQ8IZU0 186 aa29.54■■■□□ 2.32
CLN6-224ENST00000638076 FKBP8Q14318 412 aa29.53■■■□□ 2.32
CLN6-224ENST00000638076 KIF3BO15066 747 aa29.5■■■□□ 2.31
CLN6-224ENST00000638076 CNGB1Q14028 1251 aaPredicted RBP29.5■■■□□ 2.31
CLN6-224ENST00000638076 EIF2AK4Q9P2K8 1649 aaKnown RBP29.5■■■□□ 2.31
CLN6-224ENST00000638076 KANK1Q14678 1352 aa29.5■■■□□ 2.31
CLN6-224ENST00000638076 TRPM2O94759 1503 aa29.49■■■□□ 2.31
CLN6-224ENST00000638076 LAMC1P11047 1609 aa29.48■■■□□ 2.31
CLN6-224ENST00000638076 PTPRTO14522 1441 aa29.47■■■□□ 2.31
CLN6-224ENST00000638076 TET3O43151 1660 aa29.47■■■□□ 2.31
CLN6-224ENST00000638076 NEFLP07196 543 aa29.46■■■□□ 2.31
CLN6-224ENST00000638076 VWDEQ8N2E2 1590 aa29.46■■■□□ 2.31
CLN6-224ENST00000638076 PRDM15P57071 1507 aaPredicted RBP29.46■■■□□ 2.31
CLN6-224ENST00000638076 SPHKAPQ2M3C7 1700 aa29.45■■■□□ 2.31
CLN6-224ENST00000638076 ZNF518AQ6AHZ1 1483 aa29.44■■■□□ 2.3
CLN6-224ENST00000638076 CD109Q6YHK3 1445 aa29.43■■■□□ 2.3
CLN6-224ENST00000638076 KIDINS220Q9ULH0 1771 aa29.43■■■□□ 2.3
CLN6-224ENST00000638076 BCANQ96GW7 911 aa29.41■■■□□ 2.3
CLN6-224ENST00000638076 CLTCL1P53675 1640 aa29.4■■■□□ 2.3
CLN6-224ENST00000638076 MROH1Q8NDA8 1641 aa29.4■■■□□ 2.3
CLN6-224ENST00000638076 CEP152O94986 1710 aa29.39■■■□□ 2.3
CLN6-224ENST00000638076 TESK2Q96S53 571 aa29.37■■■□□ 2.29
CLN6-224ENST00000638076 CFAP74Q9C0B2 1584 aa29.36■■■□□ 2.29
CLN6-224ENST00000638076 RNF17Q9BXT8 1623 aaKnown RBP29.36■■■□□ 2.29
CLN6-224ENST00000638076 ZBED9Q6R2W3 1325 aa29.35■■■□□ 2.29
CLN6-224ENST00000638076 MADDQ8WXG6 1647 aa29.35■■■□□ 2.29
CLN6-224ENST00000638076 COL17A1Q9UMD9 1497 aaPredicted RBP29.35■■■□□ 2.29
CLN6-224ENST00000638076 POGZQ7Z3K3 1410 aa29.33■■■□□ 2.29
CLN6-224ENST00000638076 DISP3Q9P2K9 1392 aa29.32■■■□□ 2.28
CLN6-224ENST00000638076 STAC3Q96MF2 364 aa29.31■■■□□ 2.28
CLN6-224ENST00000638076 KTN1Q86UP2 1357 aaKnown RBP29.29■■■□□ 2.28
CLN6-224ENST00000638076 EFCAB6Q5THR3 1501 aa29.28■■■□□ 2.28
CLN6-224ENST00000638076 RALBP1Q15311 655 aa29.28■■■□□ 2.28
CLN6-224ENST00000638076 TMF1P82094 1093 aa29.27■■■□□ 2.28
CLN6-224ENST00000638076 TMC1Q8TDI8 760 aa29.27■■■□□ 2.28
CLN6-224ENST00000638076 MLH3Q9UHC1 1453 aa29.27■■■□□ 2.28
CLN6-224ENST00000638076 MYBBP1AQ9BQG0 1328 aaKnown RBP29.25■■■□□ 2.27
CLN6-224ENST00000638076 UGGT1Q9NYU2 1555 aa29.24■■■□□ 2.27
CLN6-224ENST00000638076 PNISRQ8TF01 805 aaKnown RBP29.23■■■□□ 2.27
CLN6-224ENST00000638076 LMTK2Q8IWU2 1503 aa29.23■■■□□ 2.27
CLN6-224ENST00000638076 NEURL4Q96JN8 1562 aa29.23■■■□□ 2.27
CLN6-224ENST00000638076 HECW2Q9P2P5 1572 aa29.23■■■□□ 2.27
CLN6-224ENST00000638076 PPRC1Q5VV67 1664 aaKnown RBP29.23■■■□□ 2.27
CLN6-224ENST00000638076 PER1O15534 1290 aaPredicted RBP29.22■■■□□ 2.27
CLN6-224ENST00000638076 FRMPD1Q5SYB0 1578 aa29.22■■■□□ 2.27
CLN6-224ENST00000638076 IQGAP1P46940 1657 aa29.21■■■□□ 2.27
CLN6-224ENST00000638076 BRD4O60885 1362 aaPredicted RBP29.2■■■□□ 2.27
CLN6-224ENST00000638076 NEO1Q92859 1461 aa29.2■■■□□ 2.26
CLN6-224ENST00000638076 SCAF11Q99590 1463 aaKnown RBP29.18■■■□□ 2.26
CLN6-224ENST00000638076 PARD3Q8TEW0 1356 aa29.17■■■□□ 2.26
CLN6-224ENST00000638076 GGT6Q6P531 493 aa29.16■■■□□ 2.26
CLN6-224ENST00000638076 PANK3Q9H999 370 aa29.16■■■□□ 2.26
CLN6-224ENST00000638076 RAPGEF3O95398 923 aa29.16■■■□□ 2.26
CLN6-224ENST00000638076 KIF1BO60333 1816 aa29.15■■■□□ 2.26
CLN6-224ENST00000638076 ABCA6Q8N139 1617 aa29.15■■■□□ 2.26
CLN6-224ENST00000638076 WASHC2CQ9Y4E1 1318 aa29.13■■■□□ 2.25
CLN6-224ENST00000638076 IRX6P78412 446 aaPredicted RBP29.12■■■□□ 2.25
CLN6-224ENST00000638076 MYOM2P54296 1465 aa29.12■■■□□ 2.25
CLN6-224ENST00000638076 MAP3K4Q9Y6R4 1608 aa29.12■■■□□ 2.25
CLN6-224ENST00000638076 KIAA1210Q9ULL0 1709 aa29.11■■■□□ 2.25
CLN6-224ENST00000638076 NLRP13Q86W25 1043 aa29.11■■■□□ 2.25
CLN6-224ENST00000638076 LRPPRCP42704 1394 aaKnown RBP29.11■■■□□ 2.25
CLN6-224ENST00000638076 NPATQ14207 1427 aa29.11■■■□□ 2.25
CLN6-224ENST00000638076 ADGRF5Q8IZF2 1346 aa29.1■■■□□ 2.25
CLN6-224ENST00000638076 MROH2AA6NES4 1674 aa29.09■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms