RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 DHX29Q7Z478 1369 aaKnown RBP26.45■■□□□ 1.83
CLN3-263ENST00000637871 MLECQ14165 292 aa26.42■■□□□ 1.82
CLN3-263ENST00000637871 AGLP35573 1532 aa26.4■■□□□ 1.82
CLN3-263ENST00000637871 ERBINQ96RT1 1412 aa26.38■■□□□ 1.81
CLN3-263ENST00000637871 ANKRD50Q9ULJ7 1429 aa26.38■■□□□ 1.81
CLN3-263ENST00000637871 BCORL1Q5H9F3 1711 aa26.38■■□□□ 1.81
CLN3-263ENST00000637871 EIF2AK4Q9P2K8 1649 aaKnown RBP26.37■■□□□ 1.81
CLN3-263ENST00000637871 KIF3BO15066 747 aa26.37■■□□□ 1.81
CLN3-263ENST00000637871 SIN3AQ96ST3 1273 aa26.34■■□□□ 1.81
CLN3-263ENST00000637871 MROH1Q8NDA8 1641 aa26.32■■□□□ 1.8
CLN3-263ENST00000637871 RNF17Q9BXT8 1623 aaKnown RBP26.32■■□□□ 1.8
CLN3-263ENST00000637871 GGT6Q6P531 493 aa26.32■■□□□ 1.8
CLN3-263ENST00000637871 PPP1R15AO75807 674 aaPredicted RBP26.32■■□□□ 1.8
CLN3-263ENST00000637871 NEUROD1Q13562 356 aa26.32■■□□□ 1.8
CLN3-263ENST00000637871 TONSLQ96HA7 1378 aa26.29■■□□□ 1.8
CLN3-263ENST00000637871 MADDQ8WXG6 1647 aa26.29■■□□□ 1.8
CLN3-263ENST00000637871 DEPDC5O75140 1603 aa26.29■■□□□ 1.8
CLN3-263ENST00000637871 ADAMTSL3P82987 1691 aa26.28■■□□□ 1.8
CLN3-263ENST00000637871 FER1L4A9Z1Z3 1794 aa26.27■■□□□ 1.8
CLN3-263ENST00000637871 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.27■■□□□ 1.8
CLN3-263ENST00000637871 PRDM15P57071 1507 aaPredicted RBP26.25■■□□□ 1.79
CLN3-263ENST00000637871 TRIM52Q96A61 297 aa26.25■■□□□ 1.79
CLN3-263ENST00000637871 UNC13BO14795 1591 aa26.25■■□□□ 1.79
CLN3-263ENST00000637871 RIMS1Q86UR5 1692 aaKnown RBP26.24■■□□□ 1.79
CLN3-263ENST00000637871 CLTCQ00610 1675 aaKnown RBP26.23■■□□□ 1.79
CLN3-263ENST00000637871 CEP152O94986 1710 aa26.23■■□□□ 1.79
CLN3-263ENST00000637871 CENPBP07199 599 aaPredicted RBP26.22■■□□□ 1.79
CLN3-263ENST00000637871 KDM4FA0A1W2PPD8 638 aa26.21■■□□□ 1.79
CLN3-263ENST00000637871 MPHOSPH9Q99550 1183 aa26.21■■□□□ 1.79
CLN3-263ENST00000637871 ABCC3O15438 1527 aa26.18■■□□□ 1.78
CLN3-263ENST00000637871 KDM5DQ9BY66 1539 aa26.18■■□□□ 1.78
CLN3-263ENST00000637871 VWDEQ8N2E2 1590 aa26.16■■□□□ 1.78
CLN3-263ENST00000637871 WASHC2CQ9Y4E1 1318 aa26.15■■□□□ 1.78
CLN3-263ENST00000637871 PLPPR3Q6T4P5 718 aa26.14■■□□□ 1.78
CLN3-263ENST00000637871 MIER1Q8N108 512 aa26.14■■□□□ 1.77
CLN3-263ENST00000637871 ZC3H13Q5T200 1668 aaKnown RBP26.14■■□□□ 1.77
CLN3-263ENST00000637871 NUP155O75694 1391 aa26.13■■□□□ 1.77
CLN3-263ENST00000637871 IQGAP3Q86VI3 1631 aa26.13■■□□□ 1.77
CLN3-263ENST00000637871 ESF1Q9H501 851 aaKnown RBP26.13■■□□□ 1.77
CLN3-263ENST00000637871 CAMSAP1Q5T5Y3 1602 aa26.12■■□□□ 1.77
CLN3-263ENST00000637871 KANK1Q14678 1352 aa26.12■■□□□ 1.77
CLN3-263ENST00000637871 FAM135AQ9P2D6 1515 aa26.11■■□□□ 1.77
CLN3-263ENST00000637871 C3P01024 1663 aa26.1■■□□□ 1.77
CLN3-263ENST00000637871 MROH2AA6NES4 1674 aa26.09■■□□□ 1.77
CLN3-263ENST00000637871 CEBPAP49715 358 aaPredicted RBP26.08■■□□□ 1.77
CLN3-263ENST00000637871 PTPRMP28827 1452 aa26.08■■□□□ 1.77
CLN3-263ENST00000637871 CNTLNQ9NXG0 1405 aa26.07■■□□□ 1.76
CLN3-263ENST00000637871 PZPP20742 1482 aa26.07■■□□□ 1.76
CLN3-263ENST00000637871 LMTK2Q8IWU2 1503 aa26.06■■□□□ 1.76
CLN3-263ENST00000637871 ANKRD30BQ9BXX2 1392 aa26.06■■□□□ 1.76
CLN3-263ENST00000637871 TET3O43151 1660 aa26.06■■□□□ 1.76
CLN3-263ENST00000637871 PPP6R1Q9UPN7 881 aa26.06■■□□□ 1.76
CLN3-263ENST00000637871 ZMYM3Q14202 1370 aa26.05■■□□□ 1.76
CLN3-263ENST00000637871 EFCAB6Q5THR3 1501 aa26.05■■□□□ 1.76
CLN3-263ENST00000637871 SLC4A1APQ9BWU0 796 aaKnown RBP26.05■■□□□ 1.76
CLN3-263ENST00000637871 CFAP65Q6ZU64 1925 aaKnown RBP26.03■■□□□ 1.76
CLN3-263ENST00000637871 E9PCH4 1651 aa26.02■■□□□ 1.76
CLN3-263ENST00000637871 NPATQ14207 1427 aa26.01■■□□□ 1.75
CLN3-263ENST00000637871 RPRD2Q5VT52 1461 aaKnown RBP26.01■■□□□ 1.75
CLN3-263ENST00000637871 FBXO31Q5XUX0 539 aaPredicted RBP25.99■■□□□ 1.75
CLN3-263ENST00000637871 PREX1Q8TCU6 1659 aa25.96■■□□□ 1.75
CLN3-263ENST00000637871 FOXD1Q16676 465 aa25.96■■□□□ 1.75
CLN3-263ENST00000637871 ARHGAP31Q2M1Z3 1444 aa25.94■■□□□ 1.74
CLN3-263ENST00000637871 PKD2Q13563 968 aa25.93■■□□□ 1.74
CLN3-263ENST00000637871 ERVK-7P63135 1459 aa25.92■■□□□ 1.74
CLN3-263ENST00000637871 SPATA31D1Q6ZQQ2 1576 aa25.9■■□□□ 1.74
CLN3-263ENST00000637871 SYNMO15061 1565 aa25.88■■□□□ 1.73
CLN3-263ENST00000637871 SPHKAPQ2M3C7 1700 aa25.87■■□□□ 1.73
CLN3-263ENST00000637871 L3MBTL2Q969R5 705 aa25.87■■□□□ 1.73
CLN3-263ENST00000637871 UGGT1Q9NYU2 1555 aa25.86■■□□□ 1.73
CLN3-263ENST00000637871 MYO3AQ8NEV4 1616 aa25.84■■□□□ 1.73
CLN3-263ENST00000637871 TNRQ92752 1358 aa25.84■■□□□ 1.73
CLN3-263ENST00000637871 NOS1P29475 1434 aa25.84■■□□□ 1.73
CLN3-263ENST00000637871 PLA2R1Q13018 1463 aa25.81■■□□□ 1.72
CLN3-263ENST00000637871 EIF4G2P78344 907 aaKnown RBP eCLIP25.81■■□□□ 1.721e-9■■■■□ 22.4
CLN3-263ENST00000637871 PTPRTO14522 1441 aa25.79■■□□□ 1.72
CLN3-263ENST00000637871 DDX10Q13206 875 aaKnown RBP25.78■■□□□ 1.72
CLN3-263ENST00000637871 TRPM2O94759 1503 aa25.78■■□□□ 1.72
CLN3-263ENST00000637871 CLTCL1P53675 1640 aa25.77■■□□□ 1.72
CLN3-263ENST00000637871 PIK3C2BO00750 1634 aa25.76■■□□□ 1.71
CLN3-263ENST00000637871 SETD1BQ9UPS6 1966 aaKnown RBP25.75■■□□□ 1.71
CLN3-263ENST00000637871 AEBP2Q6ZN18 517 aaPredicted RBP25.74■■□□□ 1.71
CLN3-263ENST00000637871 CEP170BQ9Y4F5 1589 aaPredicted RBP25.74■■□□□ 1.71
CLN3-263ENST00000637871 UHRF1BP1Q6BDS2 1440 aa25.74■■□□□ 1.71
CLN3-263ENST00000637871 ZNF142P52746 1687 aaPredicted RBP25.73■■□□□ 1.71
CLN3-263ENST00000637871 IDI1Q13907 227 aa25.72■■□□□ 1.71
CLN3-263ENST00000637871 SCAF1Q9H7N4 1312 aaKnown RBP25.72■■□□□ 1.71
CLN3-263ENST00000637871 LMTK3Q96Q04 1460 aa25.71■■□□□ 1.71
CLN3-263ENST00000637871 NLRP1Q9C000 1473 aa25.71■■□□□ 1.71
CLN3-263ENST00000637871 CCER2I3L3R5 266 aa25.7■■□□□ 1.71
CLN3-263ENST00000637871 HSPA5P11021 654 aaKnown RBP25.7■■□□□ 1.71
CLN3-263ENST00000637871 YTHDC1Q96MU7 727 aaKnown RBP25.7■■□□□ 1.7
CLN3-263ENST00000637871 MYO5BQ9ULV0 1848 aa25.69■■□□□ 1.7
CLN3-263ENST00000637871 UBR1Q8IWV7 1749 aa25.69■■□□□ 1.7
CLN3-263ENST00000637871 A2ML1A8K2U0 1454 aa25.68■■□□□ 1.7
CLN3-263ENST00000637871 ANP32CO43423 234 aa25.68■■□□□ 1.7
CLN3-263ENST00000637871 CCDC144AA2RUR9 1427 aa25.67■■□□□ 1.7
CLN3-263ENST00000637871 ADGRB3O60242 1522 aa25.66■■□□□ 1.7
CLN3-263ENST00000637871 CHGAP10645 457 aaKnown RBP25.65■■□□□ 1.7
CLN3-263ENST00000637871 SLC52A1Q9NWF4 448 aa25.65■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms