RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 HS6ST3Q8IZP7 471 aa6.17□□□□□ -1.42
VIM-210ENST00000637053 LAPTM4BQ86VI4 370 aa6.16□□□□□ -1.42
VIM-210ENST00000637053 KIAA1468Q9P260 1216 aa6.16□□□□□ -1.42
VIM-210ENST00000637053 NYAP1Q6ZVC0 841 aa6.15□□□□□ -1.42
VIM-210ENST00000637053 SEPT9Q9UHD8 586 aaPredicted RBP6.15□□□□□ -1.42
VIM-210ENST00000637053 EMILIN3Q9NT22 766 aa6.13□□□□□ -1.43
VIM-210ENST00000637053 NRG2O14511 850 aaPredicted RBP6.11□□□□□ -1.43
VIM-210ENST00000637053 MAP3K9P80192 1104 aa6.11□□□□□ -1.43
VIM-210ENST00000637053 PRKD2Q9BZL6 878 aa6.11□□□□□ -1.43
VIM-210ENST00000637053 PDE4AP27815 886 aa6.1□□□□□ -1.43
VIM-210ENST00000637053 ZNF775Q96BV0 537 aaPredicted RBP6.1□□□□□ -1.43
VIM-210ENST00000637053 TSR3Q9UJK0 312 aaKnown RBP6.1□□□□□ -1.43
VIM-210ENST00000637053 HPS5Q9UPZ3 1129 aa6.1□□□□□ -1.43
VIM-210ENST00000637053 CHGAP10645 457 aaKnown RBP6.09□□□□□ -1.43
VIM-210ENST00000637053 TJAP1Q5JTD0 557 aa6.09□□□□□ -1.43
VIM-210ENST00000637053 ZNF787Q6DD87 383 aa6.09□□□□□ -1.43
VIM-210ENST00000637053 TYW1BQ6NUM6 668 aa6.09□□□□□ -1.43
VIM-210ENST00000637053 LARP6Q9BRS8 491 aaKnown RBP6.09□□□□□ -1.43
VIM-210ENST00000637053 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.09□□□□□ -1.43
VIM-210ENST00000637053 ONECUT3O60422 494 aaPredicted RBP6.08□□□□□ -1.44
VIM-210ENST00000637053 PHF14O94880 888 aa6.08□□□□□ -1.44
VIM-210ENST00000637053 FAM98CQ17RN3 349 aaKnown RBP6.08□□□□□ -1.44
VIM-210ENST00000637053 FBXW7Q969H0 707 aa6.08□□□□□ -1.44
VIM-210ENST00000637053 DNAJC5Q9H3Z4 198 aa6.08□□□□□ -1.44
VIM-210ENST00000637053 TRIM6-TRIM34B2RNG4 842 aa6.07□□□□□ -1.44
VIM-210ENST00000637053 C6orf132Q5T0Z8 1188 aa6.07□□□□□ -1.44
VIM-210ENST00000637053 DDX27Q96GQ7 796 aaKnown RBP6.07□□□□□ -1.44
VIM-210ENST00000637053 MFSD10Q14728 455 aa6.06□□□□□ -1.44
VIM-210ENST00000637053 PPP1R18Q6NYC8 613 aa6.06□□□□□ -1.44
VIM-210ENST00000637053 LRCH3Q96II8 777 aa6.06□□□□□ -1.44
VIM-210ENST00000637053 V9GY48 417 aaPredicted RBP6.04□□□□□ -1.44
VIM-210ENST00000637053 ZNF516Q92618 1163 aa6.03□□□□□ -1.44
VIM-210ENST00000637053 TSKSQ9UJT2 592 aa6.03□□□□□ -1.44
VIM-210ENST00000637053 MTRQ99707 1265 aa6.02□□□□□ -1.45
VIM-210ENST00000637053 PDZRN3Q9UPQ7 1066 aa6.02□□□□□ -1.45
VIM-210ENST00000637053 PPP4CP60510 307 aa6.01□□□□□ -1.45
VIM-210ENST00000637053 RBM33Q96EV2 1170 aaKnown RBP6.01□□□□□ -1.45
VIM-210ENST00000637053 C3orf80F5H4A9 247 aa6□□□□□ -1.45
VIM-210ENST00000637053 GTPBP6O43824 516 aaPredicted RBP6□□□□□ -1.45
VIM-210ENST00000637053 NKX2-3Q8TAU0 364 aa6□□□□□ -1.45
VIM-210ENST00000637053 EPAS1Q99814 870 aa6□□□□□ -1.45
VIM-210ENST00000637053 EIF4ENIF1Q9NRA8 985 aaKnown RBP6□□□□□ -1.45
VIM-210ENST00000637053 RYDENQ9NUL5 291 aaKnown RBP6□□□□□ -1.45
VIM-210ENST00000637053 POTECB2RU33 542 aa5.99□□□□□ -1.45
VIM-210ENST00000637053 SMAPO00193 183 aa5.99□□□□□ -1.45
VIM-210ENST00000637053 SAMD7Q7Z3H4 446 aa5.99□□□□□ -1.45
VIM-210ENST00000637053 IL21Q9HBE4 155 aa5.99□□□□□ -1.45
VIM-210ENST00000637053 FAM198AQ9UFP1 575 aa5.99□□□□□ -1.45
VIM-210ENST00000637053 TSR1Q2NL82 804 aaKnown RBP5.98□□□□□ -1.45
VIM-210ENST00000637053 TRIM67Q6ZTA4 783 aa5.98□□□□□ -1.45
VIM-210ENST00000637053 CADPS2Q86UW7 1296 aa5.98□□□□□ -1.45
VIM-210ENST00000637053 PACS2Q86VP3 889 aa5.97□□□□□ -1.45
VIM-210ENST00000637053 DDX12PQ92771 950 aa5.97□□□□□ -1.45
VIM-210ENST00000637053 DPYSL4O14531 572 aa5.96□□□□□ -1.46
VIM-210ENST00000637053 APLP1P51693 650 aa5.96□□□□□ -1.46
VIM-210ENST00000637053 CAMK2BQ13554 666 aa5.95□□□□□ -1.46
VIM-210ENST00000637053 LCE2AQ5TA79 106 aaPredicted RBP5.95□□□□□ -1.46
VIM-210ENST00000637053 EMID1Q96A84 441 aaPredicted RBP5.95□□□□□ -1.46
VIM-210ENST00000637053 MYT1Q01538 1121 aa5.94□□□□□ -1.46
VIM-210ENST00000637053 EN1Q05925 392 aaPredicted RBP5.93□□□□□ -1.46
VIM-210ENST00000637053 CDCA7LQ96GN5 454 aa5.93□□□□□ -1.46
VIM-210ENST00000637053 PRIM1P49642 420 aaKnown RBP5.92□□□□□ -1.46
VIM-210ENST00000637053 MAP3K7O43318 606 aa5.91□□□□□ -1.46
VIM-210ENST00000637053 PRSS12P56730 875 aa5.91□□□□□ -1.46
VIM-210ENST00000637053 COPS2P61201 443 aa5.9□□□□□ -1.46
VIM-210ENST00000637053 NBR1Q14596 966 aa5.9□□□□□ -1.46
VIM-210ENST00000637053 TATDN2Q93075 761 aa5.9□□□□□ -1.46
VIM-210ENST00000637053 TREML4Q6UXN2 200 aa5.89□□□□□ -1.47
VIM-210ENST00000637053 PNMA3Q9UL41 463 aa5.89□□□□□ -1.47
VIM-210ENST00000637053 RNF40O75150 1001 aa5.88□□□□□ -1.47
VIM-210ENST00000637053 PKDCCQ504Y2 493 aa5.88□□□□□ -1.47
VIM-210ENST00000637053 TMUB1Q9BVT8 246 aa5.88□□□□□ -1.47
VIM-210ENST00000637053 RNF223E7ERA6 249 aa5.87□□□□□ -1.47
VIM-210ENST00000637053 DGAT1O75907 488 aa5.87□□□□□ -1.47
VIM-210ENST00000637053 SLC19A1P41440 591 aa5.87□□□□□ -1.47
VIM-210ENST00000637053 ZPR1O75312 459 aa5.86□□□□□ -1.47
VIM-210ENST00000637053 GGCXP38435 758 aa5.86□□□□□ -1.47
VIM-210ENST00000637053 SPRYD7Q5W111 196 aa5.86□□□□□ -1.47
VIM-210ENST00000637053 NUDT18Q6ZVK8 323 aa5.86□□□□□ -1.47
VIM-210ENST00000637053 NBPF26B4DH59 902 aa5.85□□□□□ -1.47
VIM-210ENST00000637053 ST8SIA5O15466 376 aa5.85□□□□□ -1.47
VIM-210ENST00000637053 PRR20EP86478 221 aa5.85□□□□□ -1.47
VIM-210ENST00000637053 PRR20CP86479 221 aa5.85□□□□□ -1.47
VIM-210ENST00000637053 PRR20DP86480 221 aa5.85□□□□□ -1.47
VIM-210ENST00000637053 PRR20BP86481 221 aa5.85□□□□□ -1.47
VIM-210ENST00000637053 PRR20AP86496 221 aa5.85□□□□□ -1.47
VIM-210ENST00000637053 PDIA6Q15084 440 aa5.84□□□□□ -1.47
VIM-210ENST00000637053 SWT1Q5T5J6 900 aaKnown RBP5.84□□□□□ -1.47
VIM-210ENST00000637053 LIAT1Q6ZQX7 453 aa5.84□□□□□ -1.47
VIM-210ENST00000637053 ZNF598Q86UK7 904 aaKnown RBP5.84□□□□□ -1.47
VIM-210ENST00000637053 CDHR5Q9HBB8 845 aa5.84□□□□□ -1.47
VIM-210ENST00000637053 FAM187AA6NFU0 413 aa5.83□□□□□ -1.48
VIM-210ENST00000637053 GDF9O60383 454 aa5.83□□□□□ -1.48
VIM-210ENST00000637053 AAASQ9NRG9 546 aa5.83□□□□□ -1.48
VIM-210ENST00000637053 TNFRSF10AO00220 468 aa5.82□□□□□ -1.48
VIM-210ENST00000637053 PPEF1O14829 653 aaPredicted RBP5.82□□□□□ -1.48
VIM-210ENST00000637053 CERKQ8TCT0 537 aa5.82□□□□□ -1.48
VIM-210ENST00000637053 TLL1O43897 1013 aa5.81□□□□□ -1.48
VIM-210ENST00000637053 HDGFP51858 240 aaKnown RBP5.81□□□□□ -1.48
VIM-210ENST00000637053 BLOC1S3Q6QNY0 202 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms