RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 KIAA1107Q9UPP5 1409 aa24.06■■□□□ 1.44
CLN3-249ENST00000636685 RGS17Q9UGC6 210 aaPredicted RBP24.04■■□□□ 1.44
CLN3-249ENST00000636685 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.03■■□□□ 1.44
CLN3-249ENST00000636685 PLEKHH2Q8IVE3 1493 aa24.03■■□□□ 1.44
CLN3-249ENST00000636685 ANKLE2Q86XL3 938 aa24.03■■□□□ 1.44
CLN3-249ENST00000636685 STRCP1A6NGW2 1772 aa24.02■■□□□ 1.44
CLN3-249ENST00000636685 CFDP1Q9UEE9 299 aaPredicted RBP24.01■■□□□ 1.43
CLN3-249ENST00000636685 NPHP4O75161 1426 aaPredicted RBP24.01■■□□□ 1.43
CLN3-249ENST00000636685 MED14O60244 1454 aa23.98■■□□□ 1.43
CLN3-249ENST00000636685 DEPDC5O75140 1603 aa23.97■■□□□ 1.43
CLN3-249ENST00000636685 PZPP20742 1482 aa23.97■■□□□ 1.43
CLN3-249ENST00000636685 LRRC7Q96NW7 1537 aa23.97■■□□□ 1.43
CLN3-249ENST00000636685 IQGAP1P46940 1657 aa23.96■■□□□ 1.43
CLN3-249ENST00000636685 THEMISQ8N1K5 641 aaPredicted RBP23.96■■□□□ 1.43
CLN3-249ENST00000636685 RNF17Q9BXT8 1623 aaKnown RBP23.95■■□□□ 1.43
CLN3-249ENST00000636685 FYCO1Q9BQS8 1478 aa23.94■■□□□ 1.42
CLN3-249ENST00000636685 CCNB3Q8WWL7 1395 aa23.94■■□□□ 1.42
CLN3-249ENST00000636685 UGGT1Q9NYU2 1555 aa23.94■■□□□ 1.42
CLN3-249ENST00000636685 DHX29Q7Z478 1369 aaKnown RBP23.92■■□□□ 1.42
CLN3-249ENST00000636685 ZNF644Q9H582 1327 aaPredicted RBP23.92■■□□□ 1.42
CLN3-249ENST00000636685 KDM5DQ9BY66 1539 aa23.92■■□□□ 1.42
CLN3-249ENST00000636685 FAM135AQ9P2D6 1515 aa23.91■■□□□ 1.42
CLN3-249ENST00000636685 KIF3BO15066 747 aa23.91■■□□□ 1.42
CLN3-249ENST00000636685 MIA2Q96PC5 1412 aa23.91■■□□□ 1.42
CLN3-249ENST00000636685 SYNMO15061 1565 aa23.91■■□□□ 1.42
CLN3-249ENST00000636685 NLRP1Q9C000 1473 aa23.9■■□□□ 1.42
CLN3-249ENST00000636685 MBD5Q9P267 1494 aa23.88■■□□□ 1.41
CLN3-249ENST00000636685 WASHC2CQ9Y4E1 1318 aa23.87■■□□□ 1.41
CLN3-249ENST00000636685 RTEL1-TNFRSF6BF6WH68 1400 aa23.87■■□□□ 1.41
CLN3-249ENST00000636685 POTEAQ6S8J7 498 aa23.87■■□□□ 1.41
CLN3-249ENST00000636685 TIAM1Q13009 1591 aa23.82■■□□□ 1.4
CLN3-249ENST00000636685 ZC3H13Q5T200 1668 aaKnown RBP23.82■■□□□ 1.4
CLN3-249ENST00000636685 XIRP1Q702N8 1843 aaKnown RBP23.82■■□□□ 1.4
CLN3-249ENST00000636685 MTUS2Q5JR59 1369 aa23.79■■□□□ 1.4
CLN3-249ENST00000636685 SETD1AO15047 1707 aaKnown RBP23.79■■□□□ 1.4
CLN3-249ENST00000636685 CFAP65Q6ZU64 1925 aaKnown RBP23.74■■□□□ 1.39
CLN3-249ENST00000636685 CCDC141Q6ZP82 1450 aa23.72■■□□□ 1.39
CLN3-249ENST00000636685 UBR1Q8IWV7 1749 aa23.71■■□□□ 1.39
CLN3-249ENST00000636685 FAM135BQ49AJ0 1406 aa23.71■■□□□ 1.39
CLN3-249ENST00000636685 CHIC1Q5VXU3 224 aa23.7■■□□□ 1.38
CLN3-249ENST00000636685 SCAF11Q99590 1463 aaKnown RBP23.69■■□□□ 1.38
CLN3-249ENST00000636685 ABCC3O15438 1527 aa23.69■■□□□ 1.38
CLN3-249ENST00000636685 ERVK-7P63135 1459 aa23.68■■□□□ 1.38
CLN3-249ENST00000636685 LTKP29376 864 aa23.67■■□□□ 1.38
CLN3-249ENST00000636685 EHBP1L1Q8N3D4 1523 aa23.66■■□□□ 1.38
CLN3-249ENST00000636685 ROBO1Q9Y6N7 1651 aa23.66■■□□□ 1.38
CLN3-249ENST00000636685 CAMSAP2Q08AD1 1489 aa23.65■■□□□ 1.38
CLN3-249ENST00000636685 NCOA2Q15596 1464 aa23.65■■□□□ 1.38
CLN3-249ENST00000636685 TXNDC2Q86VQ3 553 aa23.64■■□□□ 1.37
CLN3-249ENST00000636685 CEP162Q5TB80 1403 aa23.63■■□□□ 1.37
CLN3-249ENST00000636685 ARHGAP23Q9P227 1491 aa23.62■■□□□ 1.37
CLN3-249ENST00000636685 CEP152O94986 1710 aa23.61■■□□□ 1.37
CLN3-249ENST00000636685 SLIT1O75093 1534 aa23.6■■□□□ 1.37
CLN3-249ENST00000636685 RSPH4AQ5TD94 716 aa23.6■■□□□ 1.37
CLN3-249ENST00000636685 TMEM94Q12767 1356 aa23.59■■□□□ 1.37
CLN3-249ENST00000636685 ARHGEF5Q12774 1597 aa23.57■■□□□ 1.36
CLN3-249ENST00000636685 MROH1Q8NDA8 1641 aa23.56■■□□□ 1.36
CLN3-249ENST00000636685 TSPY4P0CV99 314 aa23.55■■□□□ 1.36
CLN3-249ENST00000636685 TSPY10P0CW01 314 aa23.55■■□□□ 1.36
CLN3-249ENST00000636685 RBM33Q96EV2 1170 aaKnown RBP23.55■■□□□ 1.36
CLN3-249ENST00000636685 MAP3K1Q13233 1512 aa23.54■■□□□ 1.36
CLN3-249ENST00000636685 UPF1Q92900 1129 aaKnown RBP eCLIP23.54■■□□□ 1.36
CLN3-249ENST00000636685 EID1Q9Y6B2 187 aa23.54■■□□□ 1.36
CLN3-249ENST00000636685 PHLPP1O60346 1717 aa23.53■■□□□ 1.36
CLN3-249ENST00000636685 EIF2AK4Q9P2K8 1649 aaKnown RBP23.52■■□□□ 1.36
CLN3-249ENST00000636685 PROSER2Q86WR7 435 aaPredicted RBP23.51■■□□□ 1.35
CLN3-249ENST00000636685 LRRC9Q6ZRR7 1453 aa23.5■■□□□ 1.35
CLN3-249ENST00000636685 PIK3C2BO00750 1634 aa23.49■■□□□ 1.35
CLN3-249ENST00000636685 KCNA6P17658 529 aa23.49■■□□□ 1.35
CLN3-249ENST00000636685 JCADQ9P266 1359 aa23.49■■□□□ 1.35
CLN3-249ENST00000636685 TMEM2Q9UHN6 1383 aa23.47■■□□□ 1.35
CLN3-249ENST00000636685 MAST1Q9Y2H9 1570 aa23.47■■□□□ 1.35
CLN3-249ENST00000636685 TRIM52Q96A61 297 aa23.46■■□□□ 1.35
CLN3-249ENST00000636685 SLC26A8Q96RN1 970 aa23.45■■□□□ 1.34
CLN3-249ENST00000636685 PRDM15P57071 1507 aaPredicted RBP23.44■■□□□ 1.34
CLN3-249ENST00000636685 LRP6O75581 1613 aa23.43■■□□□ 1.34
CLN3-249ENST00000636685 TET3O43151 1660 aa23.42■■□□□ 1.34
CLN3-249ENST00000636685 SLAIN2Q9P270 581 aa23.42■■□□□ 1.34
CLN3-249ENST00000636685 ARHGAP31Q2M1Z3 1444 aa23.42■■□□□ 1.34
CLN3-249ENST00000636685 COL16A1Q07092 1604 aaPredicted RBP23.41■■□□□ 1.34
CLN3-249ENST00000636685 STAG3Q9UJ98 1225 aa23.41■■□□□ 1.34
CLN3-249ENST00000636685 MSH6P52701 1360 aa23.4■■□□□ 1.34
CLN3-249ENST00000636685 NWD1Q149M9 1564 aa23.4■■□□□ 1.34
CLN3-249ENST00000636685 NKTRP30414 1462 aaKnown RBP23.39■■□□□ 1.34
CLN3-249ENST00000636685 EFCAB6Q5THR3 1501 aa23.38■■□□□ 1.33
CLN3-249ENST00000636685 MEX3CQ5U5Q3 659 aaKnown RBP23.38■■□□□ 1.33
CLN3-249ENST00000636685 ZNF772Q68DY9 489 aaPredicted RBP23.38■■□□□ 1.33
CLN3-249ENST00000636685 KDM5AP29375 1690 aaKnown RBP23.36■■□□□ 1.33
CLN3-249ENST00000636685 DUOX2Q9NRD8 1548 aa23.36■■□□□ 1.33
CLN3-249ENST00000636685 SPATA31A6Q5VVP1 1343 aa23.33■■□□□ 1.33
CLN3-249ENST00000636685 IDI1Q13907 227 aa23.33■■□□□ 1.33
CLN3-249ENST00000636685 RXRBP28702 533 aa23.32■■□□□ 1.32
CLN3-249ENST00000636685 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.32■■□□□ 1.32
CLN3-249ENST00000636685 FGD6Q6ZV73 1430 aa23.31■■□□□ 1.32
CLN3-249ENST00000636685 SRCAPQ6ZRS2 3230 aa23.31■■□□□ 1.32
CLN3-249ENST00000636685 BCANQ96GW7 911 aa23.3■■□□□ 1.32
CLN3-249ENST00000636685 SHPRHQ149N8 1683 aa23.29■■□□□ 1.32
CLN3-249ENST00000636685 CHD2O14647 1828 aaKnown RBP23.29■■□□□ 1.32
CLN3-249ENST00000636685 KIF15Q9NS87 1388 aa23.26■■□□□ 1.31
CLN3-249ENST00000636685 ADGRB3O60242 1522 aa23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms