RNA–Protein interactions for RNA: ENST00000636314.1

CLN6-214, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 3 BASIC

Gene CLN6, Length 442 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-214ENST00000636314 PPP6R1Q9UPN7 881 aa28.88■■■□□ 2.21
CLN6-214ENST00000636314 TCOF1Q13428 1488 aaKnown RBP28.87■■■□□ 2.21
CLN6-214ENST00000636314 RTEL1-TNFRSF6BF6WH68 1400 aa28.85■■■□□ 2.21
CLN6-214ENST00000636314 ARHGEF5Q12774 1597 aa28.84■■■□□ 2.21
CLN6-214ENST00000636314 MYOM3Q5VTT5 1437 aa28.84■■■□□ 2.21
CLN6-214ENST00000636314 DNMT1P26358 1616 aaKnown RBP28.83■■■□□ 2.21
CLN6-214ENST00000636314 SOCS7O14512 581 aa28.83■■■□□ 2.21
CLN6-214ENST00000636314 A2ML1A8K2U0 1454 aa28.83■■■□□ 2.21
CLN6-214ENST00000636314 UBAP1LF5GYI3 381 aa28.82■■■□□ 2.2
CLN6-214ENST00000636314 DHX29Q7Z478 1369 aaKnown RBP28.82■■■□□ 2.2
CLN6-214ENST00000636314 POLR1AO95602 1720 aaPredicted RBP28.81■■■□□ 2.2
CLN6-214ENST00000636314 RSPH4AQ5TD94 716 aa28.8■■■□□ 2.2
CLN6-214ENST00000636314 MIA2Q96PC5 1412 aa28.79■■■□□ 2.2
CLN6-214ENST00000636314 KIF3BO15066 747 aa28.77■■■□□ 2.2
CLN6-214ENST00000636314 KDM5DQ9BY66 1539 aa28.75■■■□□ 2.19
CLN6-214ENST00000636314 TNRQ92752 1358 aa28.74■■■□□ 2.19
CLN6-214ENST00000636314 FBXO31Q5XUX0 539 aaPredicted RBP28.72■■■□□ 2.19
CLN6-214ENST00000636314 PZPP20742 1482 aa28.72■■■□□ 2.19
CLN6-214ENST00000636314 FAM135AQ9P2D6 1515 aa28.71■■■□□ 2.19
CLN6-214ENST00000636314 MAST1Q9Y2H9 1570 aa28.71■■■□□ 2.19
CLN6-214ENST00000636314 TSPY4P0CV99 314 aa28.7■■■□□ 2.18
CLN6-214ENST00000636314 TSPY10P0CW01 314 aa28.7■■■□□ 2.18
CLN6-214ENST00000636314 NEURL4Q96JN8 1562 aa28.7■■■□□ 2.18
CLN6-214ENST00000636314 PTPN23Q9H3S7 1636 aa28.69■■■□□ 2.18
CLN6-214ENST00000636314 WASHC2CQ9Y4E1 1318 aa28.69■■■□□ 2.18
CLN6-214ENST00000636314 SCAF1Q9H7N4 1312 aaKnown RBP28.64■■■□□ 2.17
CLN6-214ENST00000636314 CROCC2H7BZ55 1655 aa28.64■■■□□ 2.17
CLN6-214ENST00000636314 CPS1P31327 1500 aa28.63■■■□□ 2.17
CLN6-214ENST00000636314 FGD6Q6ZV73 1430 aa28.62■■■□□ 2.17
CLN6-214ENST00000636314 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.61■■■□□ 2.17
CLN6-214ENST00000636314 SHANK2Q9UPX8 1470 aa28.6■■■□□ 2.17
CLN6-214ENST00000636314 UGGT1Q9NYU2 1555 aa28.59■■■□□ 2.17
CLN6-214ENST00000636314 ANKLE2Q86XL3 938 aa28.59■■■□□ 2.17
CLN6-214ENST00000636314 NLRP1Q9C000 1473 aa28.59■■■□□ 2.17
CLN6-214ENST00000636314 PIP4K2BP78356 416 aa28.58■■■□□ 2.17
CLN6-214ENST00000636314 THEMISQ8N1K5 641 aaPredicted RBP28.57■■■□□ 2.16
CLN6-214ENST00000636314 RNF17Q9BXT8 1623 aaKnown RBP28.57■■■□□ 2.16
CLN6-214ENST00000636314 ZC3H13Q5T200 1668 aaKnown RBP28.56■■■□□ 2.16
CLN6-214ENST00000636314 DEPDC5O75140 1603 aa28.55■■■□□ 2.16
CLN6-214ENST00000636314 EIF2AK4Q9P2K8 1649 aaKnown RBP28.54■■■□□ 2.16
CLN6-214ENST00000636314 VWDEQ8N2E2 1590 aa28.54■■■□□ 2.16
CLN6-214ENST00000636314 TOM1O60784 492 aa28.54■■■□□ 2.16
CLN6-214ENST00000636314 CFAP65Q6ZU64 1925 aaKnown RBP28.53■■■□□ 2.16
CLN6-214ENST00000636314 ABCC5O15440 1437 aa28.53■■■□□ 2.16
CLN6-214ENST00000636314 IQGAP1P46940 1657 aa28.53■■■□□ 2.16
CLN6-214ENST00000636314 NPHP4O75161 1426 aaPredicted RBP28.52■■■□□ 2.16
CLN6-214ENST00000636314 DAPK1P53355 1430 aa28.52■■■□□ 2.16
CLN6-214ENST00000636314 HSPA1LP34931 641 aa28.52■■■□□ 2.16
CLN6-214ENST00000636314 ABCC3O15438 1527 aa28.52■■■□□ 2.16
CLN6-214ENST00000636314 DUOX2Q9NRD8 1548 aa28.5■■■□□ 2.15
CLN6-214ENST00000636314 CEP152O94986 1710 aa28.5■■■□□ 2.15
CLN6-214ENST00000636314 MED14O60244 1454 aa28.49■■■□□ 2.15
CLN6-214ENST00000636314 MED1Q15648 1581 aaPredicted RBP28.48■■■□□ 2.15
CLN6-214ENST00000636314 KIF15Q9NS87 1388 aa28.46■■■□□ 2.15
CLN6-214ENST00000636314 STRCP1A6NGW2 1772 aa28.45■■■□□ 2.14
CLN6-214ENST00000636314 ERVK-7P63135 1459 aa28.44■■■□□ 2.14
CLN6-214ENST00000636314 MROH1Q8NDA8 1641 aa28.43■■■□□ 2.14
CLN6-214ENST00000636314 UBR1Q8IWV7 1749 aa28.41■■■□□ 2.14
CLN6-214ENST00000636314 ERBINQ96RT1 1412 aa28.41■■■□□ 2.14
CLN6-214ENST00000636314 FAM50AQ14320 339 aaKnown RBP28.39■■■□□ 2.14
CLN6-214ENST00000636314 ALKQ9UM73 1620 aa28.39■■■□□ 2.13
CLN6-214ENST00000636314 RRP7BPQ9NSQ0 103 aa28.38■■■□□ 2.13
CLN6-214ENST00000636314 ANKRD30AQ9BXX3 1397 aa28.37■■■□□ 2.13
CLN6-214ENST00000636314 SYNMO15061 1565 aa28.37■■■□□ 2.13
CLN6-214ENST00000636314 CHIC2Q9UKJ5 165 aa28.35■■■□□ 2.13
CLN6-214ENST00000636314 PRDM15P57071 1507 aaPredicted RBP28.34■■■□□ 2.13
CLN6-214ENST00000636314 LRRC7Q96NW7 1537 aa28.34■■■□□ 2.13
CLN6-214ENST00000636314 ADGRL2O95490 1459 aa28.33■■■□□ 2.13
CLN6-214ENST00000636314 SENP3Q9H4L4 574 aaPredicted RBP28.32■■■□□ 2.12
CLN6-214ENST00000636314 SCAF11Q99590 1463 aaKnown RBP28.3■■■□□ 2.12
CLN6-214ENST00000636314 PHF23Q9BUL5 403 aaPredicted RBP28.28■■■□□ 2.12
CLN6-214ENST00000636314 PPARGC1BQ86YN6 1023 aaKnown RBP28.26■■■□□ 2.11
CLN6-214ENST00000636314 SLIT1O75093 1534 aa28.24■■■□□ 2.11
CLN6-214ENST00000636314 PIK3C2BO00750 1634 aa28.24■■■□□ 2.11
CLN6-214ENST00000636314 ARHGAP23Q9P227 1491 aa28.23■■■□□ 2.11
CLN6-214ENST00000636314 TXNDC2Q86VQ3 553 aa28.23■■■□□ 2.11
CLN6-214ENST00000636314 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.23■■■□□ 2.11
CLN6-214ENST00000636314 ARHGAP31Q2M1Z3 1444 aa28.23■■■□□ 2.11
CLN6-214ENST00000636314 XIRP1Q702N8 1843 aaKnown RBP28.22■■■□□ 2.11
CLN6-214ENST00000636314 LTKP29376 864 aa28.22■■■□□ 2.11
CLN6-214ENST00000636314 KANK1Q14678 1352 aa28.22■■■□□ 2.11
CLN6-214ENST00000636314 EID1Q9Y6B2 187 aa28.19■■■□□ 2.1
CLN6-214ENST00000636314 ANKRD50Q9ULJ7 1429 aa28.18■■■□□ 2.1
CLN6-214ENST00000636314 STAG3Q9UJ98 1225 aa28.16■■■□□ 2.1
CLN6-214ENST00000636314 LMTK2Q8IWU2 1503 aa28.14■■■□□ 2.1
CLN6-214ENST00000636314 KDM5AP29375 1690 aaKnown RBP28.13■■■□□ 2.09
CLN6-214ENST00000636314 ROCK1Q13464 1354 aa28.11■■■□□ 2.09
CLN6-214ENST00000636314 TMEM2Q9UHN6 1383 aa28.11■■■□□ 2.09
CLN6-214ENST00000636314 EFCAB6Q5THR3 1501 aa28.11■■■□□ 2.09
CLN6-214ENST00000636314 ITGAEP38570 1179 aa28.08■■■□□ 2.09
CLN6-214ENST00000636314 UNC13BO14795 1591 aa28.07■■■□□ 2.08
CLN6-214ENST00000636314 RRBP1Q9P2E9 1410 aaKnown RBP28.05■■■□□ 2.08
CLN6-214ENST00000636314 IDI1Q13907 227 aa28.04■■■□□ 2.08
CLN6-214ENST00000636314 TET3O43151 1660 aa28.02■■■□□ 2.08
CLN6-214ENST00000636314 ADGRB3O60242 1522 aa28.02■■■□□ 2.08
CLN6-214ENST00000636314 TMEM94Q12767 1356 aa28■■■□□ 2.07
CLN6-214ENST00000636314 GCC2Q8IWJ2 1684 aa28■■■□□ 2.07
CLN6-214ENST00000636314 SLC26A8Q96RN1 970 aa27.99■■■□□ 2.07
CLN6-214ENST00000636314 ROBO1Q9Y6N7 1651 aa27.98■■■□□ 2.07
CLN6-214ENST00000636314 KCNA6P17658 529 aa27.98■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms