RNA–Protein interactions for RNA: ENST00000634712.2

LINC00339-207, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-207ENST00000634712 CROCC2H7BZ55 1655 aa24.08■■□□□ 1.45
LINC00339-207ENST00000634712 UHRF1BP1Q6BDS2 1440 aa24.08■■□□□ 1.44
LINC00339-207ENST00000634712 ANKRD30AQ9BXX3 1397 aa24.08■■□□□ 1.44
LINC00339-207ENST00000634712 DUOX2Q9NRD8 1548 aa24.07■■□□□ 1.44
LINC00339-207ENST00000634712 PREX1Q8TCU6 1659 aa24.06■■□□□ 1.44
LINC00339-207ENST00000634712 NPATQ14207 1427 aa24.04■■□□□ 1.44
LINC00339-207ENST00000634712 KDM5DQ9BY66 1539 aa24.01■■□□□ 1.43
LINC00339-207ENST00000634712 EIF2AK4Q9P2K8 1649 aaKnown RBP24.01■■□□□ 1.43
LINC00339-207ENST00000634712 ERBINQ96RT1 1412 aa24■■□□□ 1.43
LINC00339-207ENST00000634712 FAM135AQ9P2D6 1515 aa24■■□□□ 1.43
LINC00339-207ENST00000634712 NCOA1Q15788 1441 aa23.99■■□□□ 1.43
LINC00339-207ENST00000634712 PTPRKQ15262 1439 aa23.99■■□□□ 1.43
LINC00339-207ENST00000634712 RNF17Q9BXT8 1623 aaKnown RBP23.97■■□□□ 1.43
LINC00339-207ENST00000634712 ITGAEP38570 1179 aa23.97■■□□□ 1.43
LINC00339-207ENST00000634712 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.97■■□□□ 1.432e-8■■■□□ 14.6
LINC00339-207ENST00000634712 FBXO31Q5XUX0 539 aaPredicted RBP23.94■■□□□ 1.42
LINC00339-207ENST00000634712 ADGRL2O95490 1459 aa23.94■■□□□ 1.42
LINC00339-207ENST00000634712 KANK1Q14678 1352 aa23.93■■□□□ 1.42
LINC00339-207ENST00000634712 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.93■■□□□ 1.42
LINC00339-207ENST00000634712 PZPP20742 1482 aa23.92■■□□□ 1.42
LINC00339-207ENST00000634712 ABCC3O15438 1527 aa23.9■■□□□ 1.42
LINC00339-207ENST00000634712 DMRT2Q9Y5R5 561 aa23.9■■□□□ 1.42
LINC00339-207ENST00000634712 TNRQ92752 1358 aa23.89■■□□□ 1.42
LINC00339-207ENST00000634712 ZC3H13Q5T200 1668 aaKnown RBP23.89■■□□□ 1.42
LINC00339-207ENST00000634712 ANKRD50Q9ULJ7 1429 aa23.88■■□□□ 1.41
LINC00339-207ENST00000634712 MROH1Q8NDA8 1641 aa23.87■■□□□ 1.41
LINC00339-207ENST00000634712 ROCK1Q13464 1354 aa23.86■■□□□ 1.41
LINC00339-207ENST00000634712 MYO3AQ8NEV4 1616 aa23.85■■□□□ 1.41
LINC00339-207ENST00000634712 PRDM15P57071 1507 aaPredicted RBP23.85■■□□□ 1.41
LINC00339-207ENST00000634712 CEP152O94986 1710 aa23.84■■□□□ 1.41
LINC00339-207ENST00000634712 RRBP1Q9P2E9 1410 aaKnown RBP23.84■■□□□ 1.41
LINC00339-207ENST00000634712 CEP170BQ9Y4F5 1589 aaPredicted RBP23.82■■□□□ 1.4
LINC00339-207ENST00000634712 DEPDC5O75140 1603 aa23.81■■□□□ 1.4
LINC00339-207ENST00000634712 A2ML1A8K2U0 1454 aa23.81■■□□□ 1.4
LINC00339-207ENST00000634712 CAMSAP1Q5T5Y3 1602 aa23.81■■□□□ 1.4
LINC00339-207ENST00000634712 ZNF142P52746 1687 aaPredicted RBP23.79■■□□□ 1.4
LINC00339-207ENST00000634712 CFAP65Q6ZU64 1925 aaKnown RBP23.79■■□□□ 1.4
LINC00339-207ENST00000634712 STRCQ7RTU9 1775 aa23.79■■□□□ 1.4
LINC00339-207ENST00000634712 NLRP1Q9C000 1473 aa23.77■■□□□ 1.4
LINC00339-207ENST00000634712 ARHGAP31Q2M1Z3 1444 aa23.77■■□□□ 1.4
LINC00339-207ENST00000634712 THEMISQ8N1K5 641 aaPredicted RBP23.77■■□□□ 1.4
LINC00339-207ENST00000634712 ERVK-7P63135 1459 aa23.77■■□□□ 1.4
LINC00339-207ENST00000634712 NCKAP5LQ9HCH0 1330 aa23.76■■□□□ 1.39
LINC00339-207ENST00000634712 PKD2Q13563 968 aa23.76■■□□□ 1.39
LINC00339-207ENST00000634712 SPATA31D1Q6ZQQ2 1576 aa23.75■■□□□ 1.39
LINC00339-207ENST00000634712 LMTK2Q8IWU2 1503 aa23.73■■□□□ 1.39
LINC00339-207ENST00000634712 PTPRTO14522 1441 aa23.73■■□□□ 1.39
LINC00339-207ENST00000634712 VWDEQ8N2E2 1590 aa23.73■■□□□ 1.39
LINC00339-207ENST00000634712 PLA2R1Q13018 1463 aa23.73■■□□□ 1.39
LINC00339-207ENST00000634712 UGGT1Q9NYU2 1555 aa23.71■■□□□ 1.39
LINC00339-207ENST00000634712 ANKLE2Q86XL3 938 aa23.69■■□□□ 1.38
LINC00339-207ENST00000634712 STAG3Q9UJ98 1225 aa23.67■■□□□ 1.38
LINC00339-207ENST00000634712 NUP155O75694 1391 aa23.67■■□□□ 1.38
LINC00339-207ENST00000634712 EFCAB6Q5THR3 1501 aa23.65■■□□□ 1.38
LINC00339-207ENST00000634712 UNC13BO14795 1591 aa23.65■■□□□ 1.38
LINC00339-207ENST00000634712 RPRD2Q5VT52 1461 aaKnown RBP23.62■■□□□ 1.37
LINC00339-207ENST00000634712 CERKQ8TCT0 537 aa23.62■■□□□ 1.37
LINC00339-207ENST00000634712 TET3O43151 1660 aa23.61■■□□□ 1.37
LINC00339-207ENST00000634712 IDI1Q13907 227 aa23.61■■□□□ 1.37
LINC00339-207ENST00000634712 ILDR1Q86SU0 546 aaPredicted RBP23.61■■□□□ 1.37
LINC00339-207ENST00000634712 SLC52A1Q9NWF4 448 aa23.61■■□□□ 1.37
LINC00339-207ENST00000634712 NAIPQ13075 1403 aa23.6■■□□□ 1.37
LINC00339-207ENST00000634712 NOS1P29475 1434 aa23.59■■□□□ 1.37
LINC00339-207ENST00000634712 GCC2Q8IWJ2 1684 aa23.57■■□□□ 1.36
LINC00339-207ENST00000634712 IQGAP3Q86VI3 1631 aa23.57■■□□□ 1.36
LINC00339-207ENST00000634712 POLR1AO95602 1720 aaPredicted RBP23.56■■□□□ 1.36
LINC00339-207ENST00000634712 FBXO41Q8TF61 875 aa23.56■■□□□ 1.36
LINC00339-207ENST00000634712 TRIM52Q96A61 297 aa23.56■■□□□ 1.36
LINC00339-207ENST00000634712 EID1Q9Y6B2 187 aa23.56■■□□□ 1.36
LINC00339-207ENST00000634712 UBR1Q8IWV7 1749 aa23.56■■□□□ 1.36
LINC00339-207ENST00000634712 HFM1A2PYH4 1435 aa23.55■■□□□ 1.36
LINC00339-207ENST00000634712 TXNDC2Q86VQ3 553 aa23.54■■□□□ 1.36
LINC00339-207ENST00000634712 SYNMO15061 1565 aa23.54■■□□□ 1.36
LINC00339-207ENST00000634712 PIK3C2BO00750 1634 aa23.54■■□□□ 1.36
LINC00339-207ENST00000634712 NPHP4O75161 1426 aaPredicted RBP23.52■■□□□ 1.36
LINC00339-207ENST00000634712 ZNF335Q9H4Z2 1342 aaPredicted RBP23.52■■□□□ 1.36
LINC00339-207ENST00000634712 CHGAP10645 457 aaKnown RBP23.51■■□□□ 1.35
LINC00339-207ENST00000634712 E9PCH4 1651 aa23.5■■□□□ 1.35
LINC00339-207ENST00000634712 NEURL4Q96JN8 1562 aa23.5■■□□□ 1.35
LINC00339-207ENST00000634712 MED14O60244 1454 aa23.49■■□□□ 1.35
LINC00339-207ENST00000634712 TMEM2Q9UHN6 1383 aa23.49■■□□□ 1.35
LINC00339-207ENST00000634712 LTKP29376 864 aa23.49■■□□□ 1.35
LINC00339-207ENST00000634712 SCAF11Q99590 1463 aaKnown RBP23.48■■□□□ 1.35
LINC00339-207ENST00000634712 SLIT1O75093 1534 aa23.47■■□□□ 1.35
LINC00339-207ENST00000634712 ARHGAP23Q9P227 1491 aa23.47■■□□□ 1.35
LINC00339-207ENST00000634712 KDM5AP29375 1690 aaKnown RBP23.46■■□□□ 1.35
LINC00339-207ENST00000634712 HDGFP51858 240 aaKnown RBP23.46■■□□□ 1.35
LINC00339-207ENST00000634712 LTBP4Q8N2S1 1624 aa23.46■■□□□ 1.35
LINC00339-207ENST00000634712 ADGRB3O60242 1522 aa23.45■■□□□ 1.34
LINC00339-207ENST00000634712 SLC4A1APQ9BWU0 796 aaKnown RBP23.44■■□□□ 1.34
LINC00339-207ENST00000634712 IQGAP1P46940 1657 aa23.44■■□□□ 1.34
LINC00339-207ENST00000634712 BCANQ96GW7 911 aa23.42■■□□□ 1.34
LINC00339-207ENST00000634712 PPP1R15AO75807 674 aaPredicted RBP23.4■■□□□ 1.34
LINC00339-207ENST00000634712 ACIN1Q9UKV3 1341 aaKnown RBP23.39■■□□□ 1.33
LINC00339-207ENST00000634712 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.38■■□□□ 1.33
LINC00339-207ENST00000634712 SETD5Q9C0A6 1442 aa23.36■■□□□ 1.33
LINC00339-207ENST00000634712 TMEM131LA2VDJ0 1609 aa23.36■■□□□ 1.33
LINC00339-207ENST00000634712 SPHKAPQ2M3C7 1700 aa23.36■■□□□ 1.33
LINC00339-207ENST00000634712 IQSEC2Q5JU85 1478 aa23.36■■□□□ 1.33
LINC00339-207ENST00000634712 RIMS2Q9UQ26 1411 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 143.1 ms