RNA–Protein interactions for RNA: ENST00000634348.1

SRSF4-208, Transcript of serine and arginine rich splicing factor 4, human

TSL 5

Gene SRSF4, Length 8,128 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SRSF4-208	ENST00000634348	TSPYL1	Q9H0U9	437 aa		13.99	□□□□□ -0.17
SRSF4-208	ENST00000634348	TCERG1	O14776	1098 aa	Known RBP	13.98	□□□□□ -0.17
SRSF4-208	ENST00000634348	HOMER1	Q86YM7	354 aa		13.97	□□□□□ -0.17
SRSF4-208	ENST00000634348	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.97	□□□□□ -0.17
SRSF4-208	ENST00000634348	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.97	□□□□□ -0.17	5e-9	■■□□□ 13.5
SRSF4-208	ENST00000634348	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.97	□□□□□ -0.17
SRSF4-208	ENST00000634348	TPD52L1	Q16890	204 aa	Predicted RBP	13.97	□□□□□ -0.17
SRSF4-208	ENST00000634348	KIF16B	Q96L93	1317 aa		13.97	□□□□□ -0.17
SRSF4-208	ENST00000634348	GIMAP7	Q8NHV1	300 aa		13.97	□□□□□ -0.17
SRSF4-208	ENST00000634348	PES1	O00541	588 aa	Known RBP	13.96	□□□□□ -0.17
SRSF4-208	ENST00000634348	DIAPH3	Q9NSV4	1193 aa		13.96	□□□□□ -0.17
SRSF4-208	ENST00000634348	SLC4A10	Q6U841	1118 aa		13.96	□□□□□ -0.17
SRSF4-208	ENST00000634348	CEP162	Q5TB80	1403 aa		13.96	□□□□□ -0.17
SRSF4-208	ENST00000634348	GORAB	Q5T7V8	394 aa		13.96	□□□□□ -0.18
SRSF4-208	ENST00000634348	GOLGA6L7	A0A1B0GV03	622 aa		13.96	□□□□□ -0.18
SRSF4-208	ENST00000634348	CSB-PGBD3	P0DP91	1061 aa		13.96	□□□□□ -0.18
SRSF4-208	ENST00000634348	ERCC4	Q92889	916 aa	Predicted RBP	13.95	□□□□□ -0.18
SRSF4-208	ENST00000634348	RSF1	Q96T23	1441 aa	Predicted RBP	13.95	□□□□□ -0.18
SRSF4-208	ENST00000634348	RASSF8	Q8NHQ8	419 aa		13.95	□□□□□ -0.18
SRSF4-208	ENST00000634348	IPO7	O95373	1038 aa	Known RBP	13.95	□□□□□ -0.18
SRSF4-208	ENST00000634348	CCDC146	Q8IYE0	955 aa		13.94	□□□□□ -0.18
SRSF4-208	ENST00000634348	MNS1	Q8NEH6	495 aa		13.94	□□□□□ -0.18
SRSF4-208	ENST00000634348	GGT6	Q6P531	493 aa		13.94	□□□□□ -0.18
SRSF4-208	ENST00000634348	KIAA0754	O94854	1291 aa		13.94	□□□□□ -0.18
SRSF4-208	ENST00000634348	BECN2	A8MW95	431 aa		13.94	□□□□□ -0.18
SRSF4-208	ENST00000634348	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.94	□□□□□ -0.18
SRSF4-208	ENST00000634348	AEBP1	Q8IUX7	1158 aa		13.93	□□□□□ -0.18
SRSF4-208	ENST00000634348	RSPH4A	Q5TD94	716 aa		13.93	□□□□□ -0.18
SRSF4-208	ENST00000634348	NUTM2F	A1L443	756 aa		13.93	□□□□□ -0.18
SRSF4-208	ENST00000634348	ZNF526	Q8TF50	670 aa	Predicted RBP	13.93	□□□□□ -0.18
SRSF4-208	ENST00000634348	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.93	□□□□□ -0.18
SRSF4-208	ENST00000634348	SLC4A3	P48751	1232 aa		13.93	□□□□□ -0.18
SRSF4-208	ENST00000634348	BCCIP	Q9P287	314 aa	Known RBP eCLIP	13.93	□□□□□ -0.18
SRSF4-208	ENST00000634348	RCAN3	Q9UKA8	241 aa		13.93	□□□□□ -0.18
SRSF4-208	ENST00000634348	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.92	□□□□□ -0.18
SRSF4-208	ENST00000634348	TOMM22	Q9NS69	142 aa		13.92	□□□□□ -0.18
SRSF4-208	ENST00000634348	HSPA5	P11021	654 aa	Known RBP	13.92	□□□□□ -0.18
SRSF4-208	ENST00000634348	TSHZ2	Q9NRE2	1034 aa		13.92	□□□□□ -0.18
SRSF4-208	ENST00000634348	VPS53	Q5VIR6	699 aa		13.91	□□□□□ -0.18
SRSF4-208	ENST00000634348	DDX49	Q9Y6V7	483 aa	Known RBP	13.9	□□□□□ -0.18
SRSF4-208	ENST00000634348	CLASRP	Q8N2M8	674 aa	Known RBP	13.9	□□□□□ -0.18
SRSF4-208	ENST00000634348	LTV1	Q96GA3	475 aa	Predicted RBP	13.9	□□□□□ -0.18
SRSF4-208	ENST00000634348	R3HCC1	Q9Y3T6	440 aa	Known RBP	13.89	□□□□□ -0.19
SRSF4-208	ENST00000634348	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.89	□□□□□ -0.19
SRSF4-208	ENST00000634348	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
SRSF4-208	ENST00000634348	RRP9	O43818	475 aa	Known RBP	13.88	□□□□□ -0.19
SRSF4-208	ENST00000634348	CAGE1	Q8TC20	777 aa		13.88	□□□□□ -0.19
SRSF4-208	ENST00000634348	SMC4	Q9NTJ3	1288 aa		13.88	□□□□□ -0.19
SRSF4-208	ENST00000634348	SF3A1	Q15459	793 aa	Known RBP	13.88	□□□□□ -0.19
SRSF4-208	ENST00000634348	IPO8	O15397	1037 aa	Known RBP	13.88	□□□□□ -0.19
SRSF4-208	ENST00000634348	RWDD1	Q9H446	243 aa	Predicted RBP	13.86	□□□□□ -0.19
SRSF4-208	ENST00000634348	GPATCH11	Q8N954	259 aa		13.86	□□□□□ -0.19
SRSF4-208	ENST00000634348	MYO6	Q9UM54	1294 aa		13.85	□□□□□ -0.19
SRSF4-208	ENST00000634348	FRAT2	O75474	233 aa	Predicted RBP	13.85	□□□□□ -0.19
SRSF4-208	ENST00000634348	ELL2	O00472	640 aa	Predicted RBP	13.85	□□□□□ -0.19
SRSF4-208	ENST00000634348	ST18	O60284	1047 aa		13.85	□□□□□ -0.19
SRSF4-208	ENST00000634348	IFT57	Q9NWB7	429 aa		13.85	□□□□□ -0.19
SRSF4-208	ENST00000634348	BCL2L13	Q9BXK5	485 aa		13.85	□□□□□ -0.19
SRSF4-208	ENST00000634348	RRP7A	Q9Y3A4	280 aa	Known RBP	13.85	□□□□□ -0.19
SRSF4-208	ENST00000634348		G3V3G9	751 aa		13.84	□□□□□ -0.19
SRSF4-208	ENST00000634348	DCAF8	Q5TAQ9	597 aa		13.84	□□□□□ -0.19
SRSF4-208	ENST00000634348	RALBP1	Q15311	655 aa		13.84	□□□□□ -0.19
SRSF4-208	ENST00000634348	ATP6V1D	Q9Y5K8	247 aa		13.84	□□□□□ -0.19
SRSF4-208	ENST00000634348	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	13.83	□□□□□ -0.2
SRSF4-208	ENST00000634348	AXDND1	Q5T1B0	1012 aa	Predicted RBP	13.82	□□□□□ -0.2
SRSF4-208	ENST00000634348	GOLGA3	Q08378	1498 aa		13.82	□□□□□ -0.2
SRSF4-208	ENST00000634348	RBM25	P49756	843 aa	Known RBP	13.82	□□□□□ -0.2
SRSF4-208	ENST00000634348	ANKRD20A12P	Q8NF67	263 aa		13.82	□□□□□ -0.2
SRSF4-208	ENST00000634348	MARCH6	O60337	910 aa		13.82	□□□□□ -0.2
SRSF4-208	ENST00000634348	CCDC173	Q0VFZ6	552 aa		13.82	□□□□□ -0.2
SRSF4-208	ENST00000634348	PKD2	Q13563	968 aa		13.82	□□□□□ -0.2
SRSF4-208	ENST00000634348	CT47B1	P0C2W7	299 aa	Predicted RBP	13.81	□□□□□ -0.2
SRSF4-208	ENST00000634348	PCMTD1	Q96MG8	357 aa	Predicted RBP	13.81	□□□□□ -0.2
SRSF4-208	ENST00000634348	STK31	Q9BXU1	1019 aa		13.81	□□□□□ -0.2
SRSF4-208	ENST00000634348	KTN1	Q86UP2	1357 aa	Known RBP	13.81	□□□□□ -0.2
SRSF4-208	ENST00000634348	RILPL2	Q969X0	211 aa		13.81	□□□□□ -0.2
SRSF4-208	ENST00000634348	HMGB1	P09429	215 aa	Known RBP	13.81	□□□□□ -0.2
SRSF4-208	ENST00000634348	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	13.81	□□□□□ -0.2
SRSF4-208	ENST00000634348	RAD21	O60216	631 aa		13.81	□□□□□ -0.2
SRSF4-208	ENST00000634348	PLIN1	O60240	522 aa		13.8	□□□□□ -0.2
SRSF4-208	ENST00000634348	CENPH	Q9H3R5	247 aa		13.8	□□□□□ -0.2
SRSF4-208	ENST00000634348	CCDC39	Q9UFE4	941 aa		13.8	□□□□□ -0.2
SRSF4-208	ENST00000634348	NF2	P35240	595 aa		13.8	□□□□□ -0.2
SRSF4-208	ENST00000634348	HMGN5	P82970	282 aa	Known RBP	13.8	□□□□□ -0.2
SRSF4-208	ENST00000634348	NGEF	Q8N5V2	710 aa		13.8	□□□□□ -0.2
SRSF4-208	ENST00000634348	RBM10	P98175	930 aa	Known RBP	13.8	□□□□□ -0.2
SRSF4-208	ENST00000634348	SKIDA1	Q1XH10	827 aa		13.8	□□□□□ -0.2
SRSF4-208	ENST00000634348	CLGN	O14967	610 aa		13.79	□□□□□ -0.2
SRSF4-208	ENST00000634348	TMX4	Q9H1E5	349 aa	Predicted RBP	13.79	□□□□□ -0.2
SRSF4-208	ENST00000634348	CCNB3	Q8WWL7	1395 aa		13.79	□□□□□ -0.2
SRSF4-208	ENST00000634348	GTF2E1	P29083	439 aa	Predicted RBP	13.78	□□□□□ -0.2
SRSF4-208	ENST00000634348	CCAR1	Q8IX12	1150 aa	Known RBP	13.78	□□□□□ -0.2
SRSF4-208	ENST00000634348	FBXW7	Q969H0	707 aa		13.78	□□□□□ -0.2
SRSF4-208	ENST00000634348		H3BQV1	296 aa		13.78	□□□□□ -0.2
SRSF4-208	ENST00000634348	IFFO2	Q5TF58	517 aa		13.78	□□□□□ -0.2
SRSF4-208	ENST00000634348	TICAM2	Q86XR7	235 aa		13.78	□□□□□ -0.2
SRSF4-208	ENST00000634348	GPATCH3	Q96I76	525 aa		13.78	□□□□□ -0.2
SRSF4-208	ENST00000634348	NAP1L1	P55209	391 aa	Known RBP	13.77	□□□□□ -0.2
SRSF4-208	ENST00000634348	SEPT11	Q9NVA2	429 aa	Known RBP	13.77	□□□□□ -0.2
SRSF4-208	ENST00000634348	BAZ1B	Q9UIG0	1483 aa	Known RBP	13.77	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms