RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 KDM5DQ9BY66 1539 aa19.47■□□□□ 0.71
PNKP-217ENST00000625216 FBXO41Q8TF61 875 aa19.47■□□□□ 0.71
PNKP-217ENST00000625216 DAPK1P53355 1430 aa19.46■□□□□ 0.71
PNKP-217ENST00000625216 DUOX2Q9NRD8 1548 aa19.46■□□□□ 0.71
PNKP-217ENST00000625216 KIF15Q9NS87 1388 aa19.45■□□□□ 0.7
PNKP-217ENST00000625216 PTPRTO14522 1441 aa19.45■□□□□ 0.7
PNKP-217ENST00000625216 RRP7BPQ9NSQ0 103 aa19.45■□□□□ 0.7
PNKP-217ENST00000625216 NCOA1Q15788 1441 aa19.43■□□□□ 0.7
PNKP-217ENST00000625216 PZPP20742 1482 aa19.43■□□□□ 0.7
PNKP-217ENST00000625216 FBXO31Q5XUX0 539 aaPredicted RBP19.43■□□□□ 0.7
PNKP-217ENST00000625216 ANKRD30AQ9BXX3 1397 aa19.43■□□□□ 0.7
PNKP-217ENST00000625216 TNRQ92752 1358 aa19.42■□□□□ 0.7
PNKP-217ENST00000625216 EIF2AK4Q9P2K8 1649 aaKnown RBP19.41■□□□□ 0.7
PNKP-217ENST00000625216 PKD2Q13563 968 aa19.41■□□□□ 0.7
PNKP-217ENST00000625216 FAM50AQ14320 339 aaKnown RBP19.41■□□□□ 0.7
PNKP-217ENST00000625216 CERKQ8TCT0 537 aa19.41■□□□□ 0.7
PNKP-217ENST00000625216 ERBINQ96RT1 1412 aa19.41■□□□□ 0.7
PNKP-217ENST00000625216 STRCQ7RTU9 1775 aa19.4■□□□□ 0.7
PNKP-217ENST00000625216 CHIC2Q9UKJ5 165 aa19.4■□□□□ 0.7
PNKP-217ENST00000625216 DNMT1P26358 1616 aaKnown RBP19.4■□□□□ 0.7
PNKP-217ENST00000625216 RNF17Q9BXT8 1623 aaKnown RBP19.4■□□□□ 0.7
PNKP-217ENST00000625216 A2ML1A8K2U0 1454 aa19.39■□□□□ 0.69
PNKP-217ENST00000625216 PLA2R1Q13018 1463 aa19.38■□□□□ 0.69
PNKP-217ENST00000625216 CAMSAP1Q5T5Y3 1602 aa19.38■□□□□ 0.69
PNKP-217ENST00000625216 CEP170BQ9Y4F5 1589 aaPredicted RBP19.37■□□□□ 0.69
PNKP-217ENST00000625216 MYO3AQ8NEV4 1616 aa19.36■□□□□ 0.69
PNKP-217ENST00000625216 ABCC3O15438 1527 aa19.36■□□□□ 0.69
PNKP-217ENST00000625216 NCKAP5LQ9HCH0 1330 aa19.36■□□□□ 0.69
PNKP-217ENST00000625216 PPARGC1BQ86YN6 1023 aaKnown RBP19.35■□□□□ 0.69
PNKP-217ENST00000625216 THEMISQ8N1K5 641 aaPredicted RBP19.35■□□□□ 0.69
PNKP-217ENST00000625216 CROCC2H7BZ55 1655 aa19.35■□□□□ 0.69
PNKP-217ENST00000625216 ZNF142P52746 1687 aaPredicted RBP19.34■□□□□ 0.69
PNKP-217ENST00000625216 NLRP1Q9C000 1473 aa19.34■□□□□ 0.69
PNKP-217ENST00000625216 KANK1Q14678 1352 aa19.33■□□□□ 0.69
PNKP-217ENST00000625216 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.33■□□□□ 0.681e-7■■■■□ 24.4
PNKP-217ENST00000625216 ADGRL2O95490 1459 aa19.33■□□□□ 0.68
PNKP-217ENST00000625216 ZC3H13Q5T200 1668 aaKnown RBP19.33■□□□□ 0.68
PNKP-217ENST00000625216 ARHGAP31Q2M1Z3 1444 aa19.32■□□□□ 0.68
PNKP-217ENST00000625216 MROH1Q8NDA8 1641 aa19.32■□□□□ 0.68
PNKP-217ENST00000625216 PRDM15P57071 1507 aaPredicted RBP19.3■□□□□ 0.68
PNKP-217ENST00000625216 ANKLE2Q86XL3 938 aa19.29■□□□□ 0.68
PNKP-217ENST00000625216 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.28■□□□□ 0.68
PNKP-217ENST00000625216 ERVK-7P63135 1459 aa19.28■□□□□ 0.68
PNKP-217ENST00000625216 SPATA31D1Q6ZQQ2 1576 aa19.27■□□□□ 0.68
PNKP-217ENST00000625216 ANKRD50Q9ULJ7 1429 aa19.26■□□□□ 0.67
PNKP-217ENST00000625216 UGGT1Q9NYU2 1555 aa19.25■□□□□ 0.67
PNKP-217ENST00000625216 ROCK1Q13464 1354 aa19.24■□□□□ 0.67
PNKP-217ENST00000625216 DEPDC5O75140 1603 aa19.24■□□□□ 0.67
PNKP-217ENST00000625216 LMTK2Q8IWU2 1503 aa19.24■□□□□ 0.67
PNKP-217ENST00000625216 LTBP4Q8N2S1 1624 aa19.22■□□□□ 0.67
PNKP-217ENST00000625216 ZNF335Q9H4Z2 1342 aaPredicted RBP19.21■□□□□ 0.67
PNKP-217ENST00000625216 VWDEQ8N2E2 1590 aa19.2■□□□□ 0.66
PNKP-217ENST00000625216 IQSEC2Q5JU85 1478 aa19.2■□□□□ 0.66
PNKP-217ENST00000625216 CEP152O94986 1710 aa19.2■□□□□ 0.66
PNKP-217ENST00000625216 MED14O60244 1454 aa19.18■□□□□ 0.66
PNKP-217ENST00000625216 ITGAEP38570 1179 aa19.17■□□□□ 0.66
PNKP-217ENST00000625216 SLC52A1Q9NWF4 448 aa19.16■□□□□ 0.66
PNKP-217ENST00000625216 NPHP4O75161 1426 aaPredicted RBP19.16■□□□□ 0.66
PNKP-217ENST00000625216 IDI1Q13907 227 aa19.15■□□□□ 0.66
PNKP-217ENST00000625216 STAG3Q9UJ98 1225 aa19.15■□□□□ 0.66
PNKP-217ENST00000625216 NOS1P29475 1434 aa19.14■□□□□ 0.65
PNKP-217ENST00000625216 NEURL4Q96JN8 1562 aa19.14■□□□□ 0.65
PNKP-217ENST00000625216 TXNDC2Q86VQ3 553 aa19.13■□□□□ 0.65
PNKP-217ENST00000625216 EID1Q9Y6B2 187 aa19.13■□□□□ 0.65
PNKP-217ENST00000625216 RPRD2Q5VT52 1461 aaKnown RBP19.13■□□□□ 0.65
PNKP-217ENST00000625216 EFCAB6Q5THR3 1501 aa19.12■□□□□ 0.65
PNKP-217ENST00000625216 RRBP1Q9P2E9 1410 aaKnown RBP19.12■□□□□ 0.65
PNKP-217ENST00000625216 TRIM26Q12899 539 aaPredicted RBP19.12■□□□□ 0.65
PNKP-217ENST00000625216 POLR1AO95602 1720 aaPredicted RBP19.11■□□□□ 0.65
PNKP-217ENST00000625216 ARHGAP23Q9P227 1491 aa19.1■□□□□ 0.65
PNKP-217ENST00000625216 SLIT1O75093 1534 aa19.1■□□□□ 0.65
PNKP-217ENST00000625216 CFAP65Q6ZU64 1925 aaKnown RBP19.1■□□□□ 0.65
PNKP-217ENST00000625216 TMEM2Q9UHN6 1383 aa19.09■□□□□ 0.65
PNKP-217ENST00000625216 LTKP29376 864 aa19.09■□□□□ 0.65
PNKP-217ENST00000625216 SCAF11Q99590 1463 aaKnown RBP19.09■□□□□ 0.65
PNKP-217ENST00000625216 UBR1Q8IWV7 1749 aa19.08■□□□□ 0.64
PNKP-217ENST00000625216 NUP155O75694 1391 aa19.07■□□□□ 0.64
PNKP-217ENST00000625216 CPS1P31327 1500 aa19.07■□□□□ 0.64
PNKP-217ENST00000625216 UNC13BO14795 1591 aa19.06■□□□□ 0.64
PNKP-217ENST00000625216 UBAP1LF5GYI3 381 aa19.05■□□□□ 0.64
PNKP-217ENST00000625216 SYNMO15061 1565 aa19.04■□□□□ 0.64
PNKP-217ENST00000625216 HDGFP51858 240 aaKnown RBP19.04■□□□□ 0.64
PNKP-217ENST00000625216 TET3O43151 1660 aa19.04■□□□□ 0.64
PNKP-217ENST00000625216 PIK3C2BO00750 1634 aa19.03■□□□□ 0.64
PNKP-217ENST00000625216 PCGF6Q9BYE7 350 aa19.03■□□□□ 0.64
PNKP-217ENST00000625216 KDM5AP29375 1690 aaKnown RBP19.03■□□□□ 0.64
PNKP-217ENST00000625216 IQGAP1P46940 1657 aa19.02■□□□□ 0.64
PNKP-217ENST00000625216 TOM1O60784 492 aa19■□□□□ 0.63
PNKP-217ENST00000625216 IQGAP3Q86VI3 1631 aa18.99■□□□□ 0.63
PNKP-217ENST00000625216 ADGRB3O60242 1522 aa18.99■□□□□ 0.63
PNKP-217ENST00000625216 NAIPQ13075 1403 aa18.98■□□□□ 0.63
PNKP-217ENST00000625216 GCC2Q8IWJ2 1684 aa18.98■□□□□ 0.63
PNKP-217ENST00000625216 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.97■□□□□ 0.63
PNKP-217ENST00000625216 CHGAP10645 457 aaKnown RBP18.95■□□□□ 0.62
PNKP-217ENST00000625216 HFM1A2PYH4 1435 aa18.93■□□□□ 0.62
PNKP-217ENST00000625216 KCNA6P17658 529 aa18.93■□□□□ 0.62
PNKP-217ENST00000625216 BCANQ96GW7 911 aa18.93■□□□□ 0.62
PNKP-217ENST00000625216 SLC26A8Q96RN1 970 aa18.93■□□□□ 0.62
PNKP-217ENST00000625216 LRRC7Q96NW7 1537 aa18.93■□□□□ 0.62
PNKP-217ENST00000625216 ZFYVE9O95405 1425 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms