RNA–Protein interactions for RNA: ENST00000620412.4

PMPCA-210, Transcript of peptidase, mitochondrial processing alpha subunit, human

TSL 2

Gene PMPCA, Length 590 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PMPCA-210	ENST00000620412	PTPRK	Q15262	1439 aa		33.02	■■■□□ 2.88
PMPCA-210	ENST00000620412	NCOA1	Q15788	1441 aa		33.02	■■■□□ 2.88
PMPCA-210	ENST00000620412	TSPY4	P0CV99	314 aa		33.01	■■■□□ 2.87
PMPCA-210	ENST00000620412	TSPY10	P0CW01	314 aa		33.01	■■■□□ 2.87
PMPCA-210	ENST00000620412	DAPK1	P53355	1430 aa		33	■■■□□ 2.87
PMPCA-210	ENST00000620412	NCKAP5L	Q9HCH0	1330 aa		32.99	■■■□□ 2.87
PMPCA-210	ENST00000620412	ABCC5	O15440	1437 aa		32.98	■■■□□ 2.87
PMPCA-210	ENST00000620412	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	32.97	■■■□□ 2.87
PMPCA-210	ENST00000620412	CAMSAP1	Q5T5Y3	1602 aa		32.95	■■■□□ 2.87
PMPCA-210	ENST00000620412	EIF2AK4	Q9P2K8	1649 aa	Known RBP	32.93	■■■□□ 2.86
PMPCA-210	ENST00000620412	FBXO31	Q5XUX0	539 aa	Predicted RBP	32.91	■■■□□ 2.86
PMPCA-210	ENST00000620412	WASHC2C	Q9Y4E1	1318 aa		32.91	■■■□□ 2.86
PMPCA-210	ENST00000620412	FAM135A	Q9P2D6	1515 aa		32.9	■■■□□ 2.86
PMPCA-210	ENST00000620412	ADGRL2	O95490	1459 aa		32.89	■■■□□ 2.86
PMPCA-210	ENST00000620412	RRBP1	Q9P2E9	1410 aa	Known RBP	32.89	■■■□□ 2.86
PMPCA-210	ENST00000620412	DUOX2	Q9NRD8	1548 aa		32.87	■■■□□ 2.85
PMPCA-210	ENST00000620412	MYO3A	Q8NEV4	1616 aa		32.85	■■■□□ 2.85
PMPCA-210	ENST00000620412	PKD2	Q13563	968 aa		32.85	■■■□□ 2.85
PMPCA-210	ENST00000620412	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	32.83	■■■□□ 2.85
PMPCA-210	ENST00000620412	RNF17	Q9BXT8	1623 aa	Known RBP	32.83	■■■□□ 2.85
PMPCA-210	ENST00000620412	TNR	Q92752	1358 aa		32.81	■■■□□ 2.84
PMPCA-210	ENST00000620412	LTBP4	Q8N2S1	1624 aa		32.8	■■■□□ 2.84
PMPCA-210	ENST00000620412	ERBIN	Q96RT1	1412 aa		32.8	■■■□□ 2.84
PMPCA-210	ENST00000620412	PLA2R1	Q13018	1463 aa		32.8	■■■□□ 2.84
PMPCA-210	ENST00000620412	KDM5D	Q9BY66	1539 aa		32.79	■■■□□ 2.84
PMPCA-210	ENST00000620412	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	32.78	■■■□□ 2.84
PMPCA-210	ENST00000620412	A2ML1	A8K2U0	1454 aa		32.78	■■■□□ 2.84
PMPCA-210	ENST00000620412	ANKRD30A	Q9BXX3	1397 aa		32.77	■■■□□ 2.84
PMPCA-210	ENST00000620412	ZNF142	P52746	1687 aa	Predicted RBP	32.76	■■■□□ 2.84
PMPCA-210	ENST00000620412	PZP	P20742	1482 aa		32.76	■■■□□ 2.84
PMPCA-210	ENST00000620412	KIF15	Q9NS87	1388 aa		32.76	■■■□□ 2.83
PMPCA-210	ENST00000620412	FAM50A	Q14320	339 aa	Known RBP	32.75	■■■□□ 2.83
PMPCA-210	ENST00000620412	PPARGC1B	Q86YN6	1023 aa	Known RBP	32.73	■■■□□ 2.83
PMPCA-210	ENST00000620412	ZC3H13	Q5T200	1668 aa	Known RBP	32.72	■■■□□ 2.83
PMPCA-210	ENST00000620412	DEPDC5	O75140	1603 aa		32.72	■■■□□ 2.83
PMPCA-210	ENST00000620412	ROCK1	Q13464	1354 aa		32.71	■■■□□ 2.83
PMPCA-210	ENST00000620412	MROH1	Q8NDA8	1641 aa		32.69	■■■□□ 2.82
PMPCA-210	ENST00000620412	PRDM15	P57071	1507 aa	Predicted RBP	32.68	■■■□□ 2.82
PMPCA-210	ENST00000620412	THEMIS	Q8N1K5	641 aa	Predicted RBP	32.64	■■■□□ 2.82
PMPCA-210	ENST00000620412	RRP7BP	Q9NSQ0	103 aa		32.64	■■■□□ 2.82
PMPCA-210	ENST00000620412	IQSEC2	Q5JU85	1478 aa		32.62	■■■□□ 2.81
PMPCA-210	ENST00000620412	ANKLE2	Q86XL3	938 aa		32.62	■■■□□ 2.81
PMPCA-210	ENST00000620412	ABCC3	O15438	1527 aa		32.61	■■■□□ 2.81
PMPCA-210	ENST00000620412	NLRP1	Q9C000	1473 aa		32.59	■■■□□ 2.81
PMPCA-210	ENST00000620412	UBAP1L	F5GYI3	381 aa		32.58	■■■□□ 2.81
PMPCA-210	ENST00000620412	CHIC2	Q9UKJ5	165 aa		32.56	■■■□□ 2.8
PMPCA-210	ENST00000620412	VWDE	Q8N2E2	1590 aa		32.55	■■■□□ 2.8
PMPCA-210	ENST00000620412	ANKRD50	Q9ULJ7	1429 aa		32.55	■■■□□ 2.8
PMPCA-210	ENST00000620412	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	32.55	■■■□□ 2.8	3e-6	■■■■□ 20.4
PMPCA-210	ENST00000620412	UGGT1	Q9NYU2	1555 aa		32.53	■■■□□ 2.8
PMPCA-210	ENST00000620412	GCC2	Q8IWJ2	1684 aa		32.52	■■■□□ 2.8
PMPCA-210	ENST00000620412	UNC13B	O14795	1591 aa		32.51	■■■□□ 2.79
PMPCA-210	ENST00000620412	CEP152	O94986	1710 aa		32.5	■■■□□ 2.79
PMPCA-210	ENST00000620412	LMTK2	Q8IWU2	1503 aa		32.5	■■■□□ 2.79
PMPCA-210	ENST00000620412	NEURL4	Q96JN8	1562 aa		32.49	■■■□□ 2.79
PMPCA-210	ENST00000620412	ERVK-7	P63135	1459 aa		32.49	■■■□□ 2.79
PMPCA-210	ENST00000620412	DISP3	Q9P2K9	1392 aa		32.48	■■■□□ 2.79
PMPCA-210	ENST00000620412	SPATA31D1	Q6ZQQ2	1576 aa		32.47	■■■□□ 2.79
PMPCA-210	ENST00000620412	NPHP4	O75161	1426 aa	Predicted RBP	32.45	■■■□□ 2.79
PMPCA-210	ENST00000620412	POLR1A	O95602	1720 aa	Predicted RBP	32.42	■■■□□ 2.78
PMPCA-210	ENST00000620412	ARHGAP31	Q2M1Z3	1444 aa		32.42	■■■□□ 2.78
PMPCA-210	ENST00000620412	KANK1	Q14678	1352 aa		32.4	■■■□□ 2.78
PMPCA-210	ENST00000620412	HFM1	A2PYH4	1435 aa		32.4	■■■□□ 2.78
PMPCA-210	ENST00000620412	MED14	O60244	1454 aa		32.39	■■■□□ 2.78
PMPCA-210	ENST00000620412	IQGAP3	Q86VI3	1631 aa		32.37	■■■□□ 2.77
PMPCA-210	ENST00000620412	NAIP	Q13075	1403 aa		32.36	■■■□□ 2.77
PMPCA-210	ENST00000620412	SCAF1	Q9H7N4	1312 aa	Known RBP	32.36	■■■□□ 2.77
PMPCA-210	ENST00000620412	CPS1	P31327	1500 aa		32.36	■■■□□ 2.77
PMPCA-210	ENST00000620412	EFCAB6	Q5THR3	1501 aa		32.36	■■■□□ 2.77
PMPCA-210	ENST00000620412	TET3	O43151	1660 aa		32.35	■■■□□ 2.77
PMPCA-210	ENST00000620412	ITGAE	P38570	1179 aa		32.35	■■■□□ 2.77
PMPCA-210	ENST00000620412	PIP4K2B	P78356	416 aa		32.35	■■■□□ 2.77
PMPCA-210	ENST00000620412	TOM1	O60784	492 aa		32.32	■■■□□ 2.76
PMPCA-210	ENST00000620412	ILDR2	Q71H61	639 aa		32.32	■■■□□ 2.76
PMPCA-210	ENST00000620412	TXNDC2	Q86VQ3	553 aa		32.32	■■■□□ 2.76
PMPCA-210	ENST00000620412	LTK	P29376	864 aa		32.31	■■■□□ 2.76
PMPCA-210	ENST00000620412	CFAP65	Q6ZU64	1925 aa	Known RBP	32.3	■■■□□ 2.76
PMPCA-210	ENST00000620412	RPRD2	Q5VT52	1461 aa	Known RBP	32.29	■■■□□ 2.76
PMPCA-210	ENST00000620412	STAG3	Q9UJ98	1225 aa		32.28	■■■□□ 2.76
PMPCA-210	ENST00000620412	IQGAP1	P46940	1657 aa		32.25	■■■□□ 2.75
PMPCA-210	ENST00000620412	EID1	Q9Y6B2	187 aa		32.25	■■■□□ 2.75
PMPCA-210	ENST00000620412	SCAF11	Q99590	1463 aa	Known RBP	32.24	■■■□□ 2.75
PMPCA-210	ENST00000620412	IDI1	Q13907	227 aa		32.24	■■■□□ 2.75
PMPCA-210	ENST00000620412	UBR1	Q8IWV7	1749 aa		32.23	■■■□□ 2.75
PMPCA-210	ENST00000620412	HSPA1L	P34931	641 aa		32.23	■■■□□ 2.75
PMPCA-210	ENST00000620412	ARHGAP23	Q9P227	1491 aa		32.2	■■■□□ 2.75
PMPCA-210	ENST00000620412	SLIT1	O75093	1534 aa		32.18	■■■□□ 2.74
PMPCA-210	ENST00000620412	TMEM2	Q9UHN6	1383 aa		32.18	■■■□□ 2.74
PMPCA-210	ENST00000620412		E9PCH4	1651 aa		32.17	■■■□□ 2.74
PMPCA-210	ENST00000620412	KDM5A	P29375	1690 aa	Known RBP	32.17	■■■□□ 2.74
PMPCA-210	ENST00000620412	NOS1	P29475	1434 aa		32.16	■■■□□ 2.74
PMPCA-210	ENST00000620412	LRRC7	Q96NW7	1537 aa		32.15	■■■□□ 2.74
PMPCA-210	ENST00000620412	PIK3C2B	O00750	1634 aa		32.14	■■■□□ 2.74
PMPCA-210	ENST00000620412	NUP155	O75694	1391 aa		32.13	■■■□□ 2.73
PMPCA-210	ENST00000620412	ACIN1	Q9UKV3	1341 aa	Known RBP	32.13	■■■□□ 2.73
PMPCA-210	ENST00000620412	SYNM	O15061	1565 aa		32.11	■■■□□ 2.73
PMPCA-210	ENST00000620412	SENP3	Q9H4L4	574 aa	Predicted RBP	32.1	■■■□□ 2.73
PMPCA-210	ENST00000620412	SLC52A1	Q9NWF4	448 aa		32.09	■■■□□ 2.73
PMPCA-210	ENST00000620412	STRCP1	A6NGW2	1772 aa		32.09	■■■□□ 2.73
PMPCA-210	ENST00000620412	SOCS7	O14512	581 aa		32.06	■■■□□ 2.72

Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms