RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 CEP170BQ9Y4F5 1589 aaPredicted RBP18.77■□□□□ 0.6
UPF3B-204ENST00000619445 APLP2Q06481 763 aa18.77■□□□□ 0.6
UPF3B-204ENST00000619445 PKD2Q13563 968 aa18.77■□□□□ 0.6
UPF3B-204ENST00000619445 MYOM3Q5VTT5 1437 aa18.76■□□□□ 0.59
UPF3B-204ENST00000619445 MAST1Q9Y2H9 1570 aa18.76■□□□□ 0.59
UPF3B-204ENST00000619445 IQSEC2Q5JU85 1478 aa18.75■□□□□ 0.59
UPF3B-204ENST00000619445 WASHC2CQ9Y4E1 1318 aa18.74■□□□□ 0.59
UPF3B-204ENST00000619445 A2ML1A8K2U0 1454 aa18.73■□□□□ 0.59
UPF3B-204ENST00000619445 PZPP20742 1482 aa18.73■□□□□ 0.59
UPF3B-204ENST00000619445 EIF2AK4Q9P2K8 1649 aaKnown RBP18.71■□□□□ 0.59
UPF3B-204ENST00000619445 TCOF1Q13428 1488 aaKnown RBP18.71■□□□□ 0.59
UPF3B-204ENST00000619445 KANK4Q5T7N3 995 aaPredicted RBP18.7■□□□□ 0.58
UPF3B-204ENST00000619445 TNRQ92752 1358 aa18.7■□□□□ 0.58
UPF3B-204ENST00000619445 RNF17Q9BXT8 1623 aaKnown RBP18.7■□□□□ 0.58
UPF3B-204ENST00000619445 LTBP4Q8N2S1 1624 aa18.69■□□□□ 0.58
UPF3B-204ENST00000619445 ZC3H13Q5T200 1668 aaKnown RBP18.69■□□□□ 0.58
UPF3B-204ENST00000619445 DNMT1P26358 1616 aaKnown RBP18.68■□□□□ 0.58
UPF3B-204ENST00000619445 NLRP1Q9C000 1473 aa18.67■□□□□ 0.58
UPF3B-204ENST00000619445 NCKAP5LQ9HCH0 1330 aa18.67■□□□□ 0.58
UPF3B-204ENST00000619445 DUOX2Q9NRD8 1548 aa18.65■□□□□ 0.58
UPF3B-204ENST00000619445 SHANK2Q9UPX8 1470 aa18.65■□□□□ 0.58
UPF3B-204ENST00000619445 THEMISQ8N1K5 641 aaPredicted RBP18.64■□□□□ 0.57
UPF3B-204ENST00000619445 POLR1AO95602 1720 aaPredicted RBP18.63■□□□□ 0.57
UPF3B-204ENST00000619445 ABCC3O15438 1527 aa18.62■□□□□ 0.57
UPF3B-204ENST00000619445 FBXO31Q5XUX0 539 aaPredicted RBP18.62■□□□□ 0.57
UPF3B-204ENST00000619445 PTPN23Q9H3S7 1636 aa18.62■□□□□ 0.57
UPF3B-204ENST00000619445 CROCC2H7BZ55 1655 aa18.61■□□□□ 0.57
UPF3B-204ENST00000619445 ERBINQ96RT1 1412 aa18.6■□□□□ 0.57
UPF3B-204ENST00000619445 ANKLE2Q86XL3 938 aa18.59■□□□□ 0.57
UPF3B-204ENST00000619445 KIF15Q9NS87 1388 aa18.59■□□□□ 0.57
UPF3B-204ENST00000619445 UGGT1Q9NYU2 1555 aa18.59■□□□□ 0.57
UPF3B-204ENST00000619445 SPATA31D1Q6ZQQ2 1576 aa18.58■□□□□ 0.56
UPF3B-204ENST00000619445 ZNF335Q9H4Z2 1342 aaPredicted RBP18.58■□□□□ 0.56
UPF3B-204ENST00000619445 FGD6Q6ZV73 1430 aa18.58■□□□□ 0.56
UPF3B-204ENST00000619445 ABCC5O15440 1437 aa18.57■□□□□ 0.56
UPF3B-204ENST00000619445 DEPDC5O75140 1603 aa18.56■□□□□ 0.56
UPF3B-204ENST00000619445 MROH1Q8NDA8 1641 aa18.56■□□□□ 0.56
UPF3B-204ENST00000619445 PRDM15P57071 1507 aaPredicted RBP18.55■□□□□ 0.56
UPF3B-204ENST00000619445 DAPK1P53355 1430 aa18.55■□□□□ 0.56
UPF3B-204ENST00000619445 ERVK-7P63135 1459 aa18.55■□□□□ 0.56
UPF3B-204ENST00000619445 KANK1Q14678 1352 aa18.54■□□□□ 0.56
UPF3B-204ENST00000619445 ANKRD30AQ9BXX3 1397 aa18.54■□□□□ 0.56
UPF3B-204ENST00000619445 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.54■□□□□ 0.56
UPF3B-204ENST00000619445 CPS1P31327 1500 aa18.54■□□□□ 0.56
UPF3B-204ENST00000619445 ARHGAP31Q2M1Z3 1444 aa18.53■□□□□ 0.56
UPF3B-204ENST00000619445 NEURL4Q96JN8 1562 aa18.53■□□□□ 0.56
UPF3B-204ENST00000619445 CEP152O94986 1710 aa18.53■□□□□ 0.56
UPF3B-204ENST00000619445 MED14O60244 1454 aa18.53■□□□□ 0.56
UPF3B-204ENST00000619445 RRP7BPQ9NSQ0 103 aa18.51■□□□□ 0.55
UPF3B-204ENST00000619445 UBAP1LF5GYI3 381 aa18.5■□□□□ 0.55
UPF3B-204ENST00000619445 NPHP4O75161 1426 aaPredicted RBP18.49■□□□□ 0.55
UPF3B-204ENST00000619445 CFAP65Q6ZU64 1925 aaKnown RBP18.49■□□□□ 0.55
UPF3B-204ENST00000619445 IQGAP1P46940 1657 aa18.47■□□□□ 0.55
UPF3B-204ENST00000619445 UBR1Q8IWV7 1749 aa18.46■□□□□ 0.55
UPF3B-204ENST00000619445 ADGRL2O95490 1459 aa18.45■□□□□ 0.54
UPF3B-204ENST00000619445 LMTK2Q8IWU2 1503 aa18.45■□□□□ 0.54
UPF3B-204ENST00000619445 VWDEQ8N2E2 1590 aa18.44■□□□□ 0.54
UPF3B-204ENST00000619445 TOM1O60784 492 aa18.43■□□□□ 0.54
UPF3B-204ENST00000619445 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.43■□□□□ 0.542e-7■■■□□ 16.4
UPF3B-204ENST00000619445 DISP3Q9P2K9 1392 aa18.43■□□□□ 0.54
UPF3B-204ENST00000619445 KDM5AP29375 1690 aaKnown RBP18.42■□□□□ 0.54
UPF3B-204ENST00000619445 SCAF11Q99590 1463 aaKnown RBP18.42■□□□□ 0.54
UPF3B-204ENST00000619445 CHIC2Q9UKJ5 165 aa18.42■□□□□ 0.54
UPF3B-204ENST00000619445 EID1Q9Y6B2 187 aa18.42■□□□□ 0.54
UPF3B-204ENST00000619445 SLIT1O75093 1534 aa18.41■□□□□ 0.54
UPF3B-204ENST00000619445 ARHGAP23Q9P227 1491 aa18.4■□□□□ 0.54
UPF3B-204ENST00000619445 FAM50AQ14320 339 aaKnown RBP18.4■□□□□ 0.54
UPF3B-204ENST00000619445 SYNMO15061 1565 aa18.38■□□□□ 0.53
UPF3B-204ENST00000619445 STAG3Q9UJ98 1225 aa18.38■□□□□ 0.53
UPF3B-204ENST00000619445 EFCAB6Q5THR3 1501 aa18.37■□□□□ 0.53
UPF3B-204ENST00000619445 TXNDC2Q86VQ3 553 aa18.37■□□□□ 0.53
UPF3B-204ENST00000619445 ANKRD50Q9ULJ7 1429 aa18.37■□□□□ 0.53
UPF3B-204ENST00000619445 RPRD2Q5VT52 1461 aaKnown RBP18.36■□□□□ 0.53
UPF3B-204ENST00000619445 PIK3C2BO00750 1634 aa18.36■□□□□ 0.53
UPF3B-204ENST00000619445 SLC52A1Q9NWF4 448 aa18.35■□□□□ 0.53
UPF3B-204ENST00000619445 TMEM2Q9UHN6 1383 aa18.35■□□□□ 0.53
UPF3B-204ENST00000619445 NOS1P29475 1434 aa18.34■□□□□ 0.53
UPF3B-204ENST00000619445 SCAF1Q9H7N4 1312 aaKnown RBP18.33■□□□□ 0.52
UPF3B-204ENST00000619445 ROCK1Q13464 1354 aa18.31■□□□□ 0.52
UPF3B-204ENST00000619445 LTKP29376 864 aa18.31■□□□□ 0.52
UPF3B-204ENST00000619445 IDI1Q13907 227 aa18.31■□□□□ 0.52
UPF3B-204ENST00000619445 LRRC7Q96NW7 1537 aa18.31■□□□□ 0.52
UPF3B-204ENST00000619445 PIP4K2BP78356 416 aa18.3■□□□□ 0.52
UPF3B-204ENST00000619445 TET3O43151 1660 aa18.3■□□□□ 0.52
UPF3B-204ENST00000619445 STRCP1A6NGW2 1772 aa18.3■□□□□ 0.52
UPF3B-204ENST00000619445 ADGRB3O60242 1522 aa18.29■□□□□ 0.52
UPF3B-204ENST00000619445 GCC2Q8IWJ2 1684 aa18.28■□□□□ 0.52
UPF3B-204ENST00000619445 HDGFP51858 240 aaKnown RBP18.28■□□□□ 0.52
UPF3B-204ENST00000619445 UNC13BO14795 1591 aa18.27■□□□□ 0.52
UPF3B-204ENST00000619445 HSPA1LP34931 641 aa18.25■□□□□ 0.51
UPF3B-204ENST00000619445 SOCS7O14512 581 aa18.23■□□□□ 0.51
UPF3B-204ENST00000619445 KCNA6P17658 529 aa18.21■□□□□ 0.51
UPF3B-204ENST00000619445 ILDR2Q71H61 639 aa18.21■□□□□ 0.51
UPF3B-204ENST00000619445 IQGAP3Q86VI3 1631 aa18.21■□□□□ 0.51
UPF3B-204ENST00000619445 ALKQ9UM73 1620 aa18.21■□□□□ 0.51
UPF3B-204ENST00000619445 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.19■□□□□ 0.5
UPF3B-204ENST00000619445 NKTRP30414 1462 aaKnown RBP18.19■□□□□ 0.5
UPF3B-204ENST00000619445 XIRP1Q702N8 1843 aaKnown RBP18.18■□□□□ 0.5
UPF3B-204ENST00000619445 PPP1R15AO75807 674 aaPredicted RBP18.17■□□□□ 0.5
UPF3B-204ENST00000619445 BCANQ96GW7 911 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms