RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 WASHC2CQ9Y4E1 1318 aa14.52□□□□□ -0.08
UPF3A-212ENST00000619079 CCDC7Q96M83 1385 aa14.52□□□□□ -0.09
UPF3A-212ENST00000619079 KDM6BO15054 1643 aa14.51□□□□□ -0.09
UPF3A-212ENST00000619079 DENND4BO75064 1496 aaPredicted RBP14.51□□□□□ -0.09
UPF3A-212ENST00000619079 CAMSAP2Q08AD1 1489 aa14.51□□□□□ -0.09
UPF3A-212ENST00000619079 SAMD9LQ8IVG5 1584 aa14.51□□□□□ -0.09
UPF3A-212ENST00000619079 NAIPQ13075 1403 aa14.5□□□□□ -0.09
UPF3A-212ENST00000619079 PLEKHH2Q8IVE3 1493 aa14.5□□□□□ -0.09
UPF3A-212ENST00000619079 SYCP2Q9BX26 1530 aa14.5□□□□□ -0.09
UPF3A-212ENST00000619079 AFAP1Q8N556 730 aa14.5□□□□□ -0.09
UPF3A-212ENST00000619079 NEFMP07197 916 aa14.49□□□□□ -0.09
UPF3A-212ENST00000619079 COL17A1Q9UMD9 1497 aaPredicted RBP14.49□□□□□ -0.09
UPF3A-212ENST00000619079 ABCC1P33527 1531 aa14.49□□□□□ -0.09
UPF3A-212ENST00000619079 KIAA1107Q9UPP5 1409 aa14.47□□□□□ -0.09
UPF3A-212ENST00000619079 TCERG1O14776 1098 aaKnown RBP14.47□□□□□ -0.09
UPF3A-212ENST00000619079 RTN4Q9NQC3 1192 aaKnown RBP14.47□□□□□ -0.09
UPF3A-212ENST00000619079 POGZQ7Z3K3 1410 aa14.47□□□□□ -0.09
UPF3A-212ENST00000619079 TRAPPC8Q9Y2L5 1435 aa14.47□□□□□ -0.09
UPF3A-212ENST00000619079 ARHGEF12Q9NZN5 1544 aa14.46□□□□□ -0.09
UPF3A-212ENST00000619079 ZNF518AQ6AHZ1 1483 aa14.46□□□□□ -0.09
UPF3A-212ENST00000619079 TSPY4P0CV99 314 aa14.46□□□□□ -0.09
UPF3A-212ENST00000619079 TSPY10P0CW01 314 aa14.46□□□□□ -0.09
UPF3A-212ENST00000619079 PTPRKQ15262 1439 aa14.45□□□□□ -0.1
UPF3A-212ENST00000619079 RSPH4AQ5TD94 716 aa14.44□□□□□ -0.1
UPF3A-212ENST00000619079 POLR1AO95602 1720 aaPredicted RBP14.44□□□□□ -0.1
UPF3A-212ENST00000619079 SPAG9O60271 1321 aaKnown RBP14.44□□□□□ -0.1
UPF3A-212ENST00000619079 TCOF1Q13428 1488 aaKnown RBP14.43□□□□□ -0.1
UPF3A-212ENST00000619079 CCDC141Q6ZP82 1450 aa14.43□□□□□ -0.1
UPF3A-212ENST00000619079 MBD5Q9P267 1494 aa14.43□□□□□ -0.1
UPF3A-212ENST00000619079 MS4A1P11836 297 aa14.43□□□□□ -0.1
UPF3A-212ENST00000619079 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.41□□□□□ -0.1
UPF3A-212ENST00000619079 CHIC2Q9UKJ5 165 aa14.41□□□□□ -0.1
UPF3A-212ENST00000619079 DDRGK1Q96HY6 314 aa14.4□□□□□ -0.1
UPF3A-212ENST00000619079 RICTORQ6R327 1708 aa14.4□□□□□ -0.1
UPF3A-212ENST00000619079 FRMPD1Q5SYB0 1578 aa14.39□□□□□ -0.11
UPF3A-212ENST00000619079 DAPK1P53355 1430 aa14.39□□□□□ -0.11
UPF3A-212ENST00000619079 LAS1LQ9Y4W2 734 aaKnown RBP14.39□□□□□ -0.11
UPF3A-212ENST00000619079 GCC2Q8IWJ2 1684 aa14.39□□□□□ -0.11
UPF3A-212ENST00000619079 ABCC5O15440 1437 aa14.38□□□□□ -0.11
UPF3A-212ENST00000619079 GSE1Q14687 1217 aa14.38□□□□□ -0.11
UPF3A-212ENST00000619079 NPM2Q86SE8 214 aaKnown RBP14.38□□□□□ -0.11
UPF3A-212ENST00000619079 ARHGEF5Q12774 1597 aa14.38□□□□□ -0.11
UPF3A-212ENST00000619079 PDE4AP27815 886 aa14.37□□□□□ -0.11
UPF3A-212ENST00000619079 KIF7Q2M1P5 1343 aa14.37□□□□□ -0.11
UPF3A-212ENST00000619079 C9orf84Q5VXU9 1444 aa14.37□□□□□ -0.11
UPF3A-212ENST00000619079 KDM5CP41229 1560 aa14.37□□□□□ -0.11
UPF3A-212ENST00000619079 BACH2Q9BYV9 841 aa14.36□□□□□ -0.11
UPF3A-212ENST00000619079 YEATS2Q9ULM3 1422 aa14.36□□□□□ -0.11
UPF3A-212ENST00000619079 HECW2Q9P2P5 1572 aa14.36□□□□□ -0.11
UPF3A-212ENST00000619079 SPATA31E1Q6ZUB1 1445 aa14.36□□□□□ -0.11
UPF3A-212ENST00000619079 MAGI2Q86UL8 1455 aa14.36□□□□□ -0.11
UPF3A-212ENST00000619079 ZMYM4Q5VZL5 1548 aa14.36□□□□□ -0.11
UPF3A-212ENST00000619079 ZFYVE16Q7Z3T8 1539 aa14.36□□□□□ -0.11
UPF3A-212ENST00000619079 DNMT1P26358 1616 aaKnown RBP14.36□□□□□ -0.11
UPF3A-212ENST00000619079 MLH3Q9UHC1 1453 aa14.35□□□□□ -0.11
UPF3A-212ENST00000619079 L3MBTL2Q969R5 705 aa14.35□□□□□ -0.11
UPF3A-212ENST00000619079 ATP7AQ04656 1500 aa14.35□□□□□ -0.11
UPF3A-212ENST00000619079 RRP7BPQ9NSQ0 103 aa14.34□□□□□ -0.11
UPF3A-212ENST00000619079 ARID4BQ4LE39 1312 aaPredicted RBP14.34□□□□□ -0.11
UPF3A-212ENST00000619079 RTEL1-TNFRSF6BF6WH68 1400 aa14.33□□□□□ -0.12
UPF3A-212ENST00000619079 ANKRD30AQ9BXX3 1397 aa14.32□□□□□ -0.12
UPF3A-212ENST00000619079 RSPH6AQ9H0K4 717 aa14.32□□□□□ -0.12
UPF3A-212ENST00000619079 SHANK2Q9UPX8 1470 aa14.32□□□□□ -0.12
UPF3A-212ENST00000619079 DHX29Q7Z478 1369 aaKnown RBP14.32□□□□□ -0.12
UPF3A-212ENST00000619079 RRP1P56182 461 aaKnown RBP14.32□□□□□ -0.12
UPF3A-212ENST00000619079 RPRD2Q5VT52 1461 aaKnown RBP14.31□□□□□ -0.12
UPF3A-212ENST00000619079 BRPF3Q9ULD4 1205 aa14.31□□□□□ -0.12
UPF3A-212ENST00000619079 INO80Q9ULG1 1556 aaPredicted RBP14.31□□□□□ -0.12
UPF3A-212ENST00000619079 ARHGEF40Q8TER5 1519 aa14.31□□□□□ -0.12
UPF3A-212ENST00000619079 KIDINS220Q9ULH0 1771 aa14.3□□□□□ -0.12
UPF3A-212ENST00000619079 KIF15Q9NS87 1388 aa14.3□□□□□ -0.12
UPF3A-212ENST00000619079 ATP10AO60312 1499 aa14.3□□□□□ -0.12
UPF3A-212ENST00000619079 CROCC2H7BZ55 1655 aa14.3□□□□□ -0.12
UPF3A-212ENST00000619079 MPHOSPH9Q99550 1183 aa14.29□□□□□ -0.12
UPF3A-212ENST00000619079 ABCA6Q8N139 1617 aa14.29□□□□□ -0.12
UPF3A-212ENST00000619079 EIF5BO60841 1220 aaKnown RBP14.29□□□□□ -0.12
UPF3A-212ENST00000619079 DIP2CQ9Y2E4 1556 aa14.28□□□□□ -0.12
UPF3A-212ENST00000619079 MAST1Q9Y2H9 1570 aa14.28□□□□□ -0.12
UPF3A-212ENST00000619079 PNISRQ8TF01 805 aaKnown RBP14.28□□□□□ -0.12
UPF3A-212ENST00000619079 A2MP01023 1474 aa14.28□□□□□ -0.12
UPF3A-212ENST00000619079 MLECQ14165 292 aa14.27□□□□□ -0.12
UPF3A-212ENST00000619079 ROCK2O75116 1388 aaKnown RBP14.27□□□□□ -0.13
UPF3A-212ENST00000619079 NFKBIBQ15653 356 aa14.26□□□□□ -0.13
UPF3A-212ENST00000619079 FAM43AQ8N2R8 423 aa14.26□□□□□ -0.13
UPF3A-212ENST00000619079 KTN1Q86UP2 1357 aaKnown RBP14.26□□□□□ -0.13
UPF3A-212ENST00000619079 EXOC6Q8TAG9 804 aa14.25□□□□□ -0.13
UPF3A-212ENST00000619079 TMC1Q8TDI8 760 aa14.25□□□□□ -0.13
UPF3A-212ENST00000619079 DAXXQ9UER7 740 aaPredicted RBP14.25□□□□□ -0.13
UPF3A-212ENST00000619079 LRPPRCP42704 1394 aaKnown RBP14.25□□□□□ -0.13
UPF3A-212ENST00000619079 ROCK1Q13464 1354 aa14.25□□□□□ -0.13
UPF3A-212ENST00000619079 ANKRD30BQ9BXX2 1392 aa14.25□□□□□ -0.13
UPF3A-212ENST00000619079 KIF3BO15066 747 aa14.25□□□□□ -0.13
UPF3A-212ENST00000619079 NBPF8Q3BBV2 869 aa14.25□□□□□ -0.13
UPF3A-212ENST00000619079 ADGRL2O95490 1459 aa14.25□□□□□ -0.13
UPF3A-212ENST00000619079 PDE3BQ13370 1112 aa14.24□□□□□ -0.13
UPF3A-212ENST00000619079 RCAN3Q9UKA8 241 aa14.24□□□□□ -0.13
UPF3A-212ENST00000619079 PLXNC1O60486 1568 aa14.24□□□□□ -0.13
UPF3A-212ENST00000619079 GGT6Q6P531 493 aa14.24□□□□□ -0.13
UPF3A-212ENST00000619079 ADGBQ8N7X0 1667 aa14.23□□□□□ -0.13
UPF3A-212ENST00000619079 DUOX2Q9NRD8 1548 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms