RNA–Protein interactions for RNA: ENST00000618836.4

UBE2D3-233, Transcript of ubiquitin conjugating enzyme E2 D3, human

APPRIS ALT1 TSL 5 BASIC

Gene UBE2D3, Length 3,472 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-233	ENST00000618836	ZNF592	Q92610	1267 aa		5.8	□□□□□ -1.48
UBE2D3-233	ENST00000618836	ZFP91	Q96JP5	570 aa	Predicted RBP	5.8	□□□□□ -1.48
UBE2D3-233	ENST00000618836	ABCA10	Q8WWZ4	1543 aa		5.8	□□□□□ -1.48
UBE2D3-233	ENST00000618836	PLA2R1	Q13018	1463 aa		5.8	□□□□□ -1.48
UBE2D3-233	ENST00000618836	SETD1B	Q9UPS6	1966 aa	Known RBP	5.79	□□□□□ -1.48
UBE2D3-233	ENST00000618836	FAM69C	Q0P6D2	419 aa		5.79	□□□□□ -1.48
UBE2D3-233	ENST00000618836	NCOA1	Q15788	1441 aa		5.79	□□□□□ -1.48
UBE2D3-233	ENST00000618836	IRX6	P78412	446 aa	Predicted RBP	5.79	□□□□□ -1.48
UBE2D3-233	ENST00000618836	NBR1	Q14596	966 aa		5.79	□□□□□ -1.48
UBE2D3-233	ENST00000618836	ZCCHC11	Q5TAX3	1644 aa	Known RBP	5.79	□□□□□ -1.48
UBE2D3-233	ENST00000618836	TMED8	Q6PL24	325 aa	Predicted RBP	5.79	□□□□□ -1.48
UBE2D3-233	ENST00000618836	ERICH3	Q5RHP9	1530 aa		5.79	□□□□□ -1.48
UBE2D3-233	ENST00000618836	TEX2	Q8IWB9	1127 aa		5.78	□□□□□ -1.48
UBE2D3-233	ENST00000618836	CERS3	Q8IU89	383 aa		5.77	□□□□□ -1.49
UBE2D3-233	ENST00000618836	RGS17	Q9UGC6	210 aa	Predicted RBP	5.77	□□□□□ -1.49
UBE2D3-233	ENST00000618836	POLR1A	O95602	1720 aa	Predicted RBP	5.77	□□□□□ -1.49
UBE2D3-233	ENST00000618836	ABCA9	Q8IUA7	1624 aa		5.76	□□□□□ -1.49
UBE2D3-233	ENST00000618836	NCL	P19338	710 aa	Known RBP	5.76	□□□□□ -1.49
UBE2D3-233	ENST00000618836	PSMD1	Q99460	953 aa		5.76	□□□□□ -1.49
UBE2D3-233	ENST00000618836		A0A0U1RQG5	324 aa	Predicted RBP	5.76	□□□□□ -1.49
UBE2D3-233	ENST00000618836	C1orf115	Q9H7X2	142 aa		5.76	□□□□□ -1.49
UBE2D3-233	ENST00000618836	SSUH2	Q9Y2M2	353 aa		5.76	□□□□□ -1.49
UBE2D3-233	ENST00000618836	GRIPAP1	Q4V328	841 aa		5.75	□□□□□ -1.49
UBE2D3-233	ENST00000618836	SPOCK2	Q92563	424 aa		5.75	□□□□□ -1.49
UBE2D3-233	ENST00000618836	CIZ1	Q9ULV3	898 aa	Predicted RBP	5.75	□□□□□ -1.49
UBE2D3-233	ENST00000618836	PLCD3	Q8N3E9	789 aa		5.74	□□□□□ -1.49
UBE2D3-233	ENST00000618836	PRDM16	Q9HAZ2	1276 aa		5.74	□□□□□ -1.49
UBE2D3-233	ENST00000618836	TCOF1	Q13428	1488 aa	Known RBP	5.74	□□□□□ -1.49
UBE2D3-233	ENST00000618836	ZMYND15	Q9H091	742 aa		5.73	□□□□□ -1.49
UBE2D3-233	ENST00000618836	MIER1	Q8N108	512 aa		5.73	□□□□□ -1.49
UBE2D3-233	ENST00000618836	BBX	Q8WY36	941 aa	Predicted RBP	5.73	□□□□□ -1.49
UBE2D3-233	ENST00000618836	C3	P01024	1663 aa		5.73	□□□□□ -1.49
UBE2D3-233	ENST00000618836	ASXL2	Q76L83	1435 aa		5.73	□□□□□ -1.49
UBE2D3-233	ENST00000618836	MYT1L	Q9UL68	1186 aa		5.73	□□□□□ -1.49
UBE2D3-233	ENST00000618836	CFAP74	Q9C0B2	1584 aa		5.72	□□□□□ -1.49
UBE2D3-233	ENST00000618836	BRPF1	P55201	1214 aa	Predicted RBP	5.72	□□□□□ -1.49
UBE2D3-233	ENST00000618836	SET	Q01105	290 aa	Predicted RBP	5.72	□□□□□ -1.49
UBE2D3-233	ENST00000618836	SPHKAP	Q2M3C7	1700 aa		5.72	□□□□□ -1.49
UBE2D3-233	ENST00000618836	FAM177A1	Q8N128	213 aa	Predicted RBP	5.72	□□□□□ -1.49
UBE2D3-233	ENST00000618836	ACIN1	Q9UKV3	1341 aa	Known RBP	5.72	□□□□□ -1.49
UBE2D3-233	ENST00000618836	KIF14	Q15058	1648 aa		5.71	□□□□□ -1.49
UBE2D3-233	ENST00000618836	IPO4	Q8TEX9	1081 aa	Known RBP	5.71	□□□□□ -1.49
UBE2D3-233	ENST00000618836	SHPRH	Q149N8	1683 aa		5.71	□□□□□ -1.5
UBE2D3-233	ENST00000618836	NAP1L2	Q9ULW6	460 aa	Predicted RBP	5.71	□□□□□ -1.5
UBE2D3-233	ENST00000618836	VWDE	Q8N2E2	1590 aa		5.71	□□□□□ -1.5
UBE2D3-233	ENST00000618836	MAGI2	Q86UL8	1455 aa		5.71	□□□□□ -1.5
UBE2D3-233	ENST00000618836	NEO1	Q92859	1461 aa		5.71	□□□□□ -1.5
UBE2D3-233	ENST00000618836	XIRP1	Q702N8	1843 aa	Known RBP	5.7	□□□□□ -1.5
UBE2D3-233	ENST00000618836	WIZ	O95785	1651 aa		5.7	□□□□□ -1.5
UBE2D3-233	ENST00000618836	DEPDC5	O75140	1603 aa		5.7	□□□□□ -1.5
UBE2D3-233	ENST00000618836	CWC22	Q9HCG8	908 aa	Known RBP	5.7	□□□□□ -1.5
UBE2D3-233	ENST00000618836	GLIPR1L2	Q4G1C9	344 aa		5.7	□□□□□ -1.5
UBE2D3-233	ENST00000618836	MAFG	O15525	162 aa		5.69	□□□□□ -1.5
UBE2D3-233	ENST00000618836	CNPY4	Q8N129	248 aa		5.69	□□□□□ -1.5
UBE2D3-233	ENST00000618836	SETBP1	Q9Y6X0	1596 aa		5.69	□□□□□ -1.5
UBE2D3-233	ENST00000618836	DEK	P35659	375 aa	Known RBP	5.69	□□□□□ -1.5
UBE2D3-233	ENST00000618836	MCC	P23508	829 aa		5.68	□□□□□ -1.5
UBE2D3-233	ENST00000618836	SPRYD3	Q8NCJ5	442 aa		5.68	□□□□□ -1.5
UBE2D3-233	ENST00000618836	ZNF428	Q96B54	188 aa		5.68	□□□□□ -1.5
UBE2D3-233	ENST00000618836	FHAD1	B1AJZ9	1412 aa		5.68	□□□□□ -1.5
UBE2D3-233	ENST00000618836	CADPS2	Q86UW7	1296 aa		5.68	□□□□□ -1.5
UBE2D3-233	ENST00000618836	PTPRK	Q15262	1439 aa		5.68	□□□□□ -1.5
UBE2D3-233	ENST00000618836	PRG4	Q92954	1404 aa	Predicted RBP	5.68	□□□□□ -1.5
UBE2D3-233	ENST00000618836	CDK13	Q14004	1512 aa	Known RBP	5.68	□□□□□ -1.5
UBE2D3-233	ENST00000618836	LRRC7	Q96NW7	1537 aa		5.68	□□□□□ -1.5
UBE2D3-233	ENST00000618836	KCTD17	Q8N5Z5	321 aa		5.68	□□□□□ -1.5
UBE2D3-233	ENST00000618836	SECISBP2L	Q93073	1101 aa	Known RBP	5.68	□□□□□ -1.5
UBE2D3-233	ENST00000618836	PLCD4	Q9BRC7	762 aa		5.68	□□□□□ -1.5
UBE2D3-233	ENST00000618836	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	5.68	□□□□□ -1.5
UBE2D3-233	ENST00000618836	FANCA	O15360	1455 aa		5.67	□□□□□ -1.5
UBE2D3-233	ENST00000618836	GTPBP6	O43824	516 aa	Predicted RBP	5.67	□□□□□ -1.5
UBE2D3-233	ENST00000618836	EFCAB5	A4FU69	1503 aa		5.67	□□□□□ -1.5
UBE2D3-233	ENST00000618836	MNX1	P50219	401 aa	Predicted RBP	5.67	□□□□□ -1.5
UBE2D3-233	ENST00000618836	MTMR7	Q9Y216	660 aa		5.67	□□□□□ -1.5
UBE2D3-233	ENST00000618836	RAD21	O60216	631 aa		5.67	□□□□□ -1.5
UBE2D3-233	ENST00000618836	UPF1	Q92900	1129 aa	Known RBP eCLIP	5.67	□□□□□ -1.5	9e-15	■■□□□ 12.1
UBE2D3-233	ENST00000618836	PRDM10	Q9NQV6	1147 aa		5.66	□□□□□ -1.5
UBE2D3-233	ENST00000618836	AGL	P35573	1532 aa		5.66	□□□□□ -1.5
UBE2D3-233	ENST00000618836	NWD1	Q149M9	1564 aa		5.66	□□□□□ -1.5
UBE2D3-233	ENST00000618836	NEURL4	Q96JN8	1562 aa		5.65	□□□□□ -1.5
UBE2D3-233	ENST00000618836	RASEF	Q8IZ41	740 aa		5.65	□□□□□ -1.5
UBE2D3-233	ENST00000618836	KCNG1	Q9UIX4	513 aa		5.65	□□□□□ -1.5
UBE2D3-233	ENST00000618836	BCL9L	Q86UU0	1499 aa		5.65	□□□□□ -1.51
UBE2D3-233	ENST00000618836	RAPGEF2	Q9Y4G8	1499 aa		5.65	□□□□□ -1.51
UBE2D3-233	ENST00000618836	CCDC27	Q2M243	656 aa		5.65	□□□□□ -1.51
UBE2D3-233	ENST00000618836	SOGA1	O94964	1423 aa		5.65	□□□□□ -1.51
UBE2D3-233	ENST00000618836	NUBP1	P53384	320 aa		5.64	□□□□□ -1.51
UBE2D3-233	ENST00000618836	KIAA1210	Q9ULL0	1709 aa		5.64	□□□□□ -1.51
UBE2D3-233	ENST00000618836	FGD5	Q6ZNL6	1462 aa		5.64	□□□□□ -1.51
UBE2D3-233	ENST00000618836	WDR7	Q9Y4E6	1490 aa		5.64	□□□□□ -1.51
UBE2D3-233	ENST00000618836	FHOD3	Q2V2M9	1422 aa		5.64	□□□□□ -1.51
UBE2D3-233	ENST00000618836	RAD54L2	Q9Y4B4	1467 aa		5.64	□□□□□ -1.51
UBE2D3-233	ENST00000618836	FTSJ3	Q8IY81	847 aa	Known RBP	5.64	□□□□□ -1.51
UBE2D3-233	ENST00000618836	NPAT	Q14207	1427 aa		5.63	□□□□□ -1.51
UBE2D3-233	ENST00000618836	C1QBP	Q07021	282 aa	Known RBP	5.63	□□□□□ -1.51
UBE2D3-233	ENST00000618836	MYO3A	Q8NEV4	1616 aa		5.63	□□□□□ -1.51
UBE2D3-233	ENST00000618836	CCDC125	Q86Z20	511 aa		5.62	□□□□□ -1.51
UBE2D3-233	ENST00000618836	DNAJC2	Q99543	621 aa	Known RBP	5.62	□□□□□ -1.51
UBE2D3-233	ENST00000618836	STRCP1	A6NGW2	1772 aa		5.62	□□□□□ -1.51
UBE2D3-233	ENST00000618836	UNC13B	O14795	1591 aa		5.62	□□□□□ -1.51

Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms