RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 CERKQ8TCT0 537 aa29.74■■■□□ 2.35
CCDC28A-203ENST00000617445 ZNF142P52746 1687 aaPredicted RBP29.74■■■□□ 2.35
CCDC28A-203ENST00000617445 PTPN23Q9H3S7 1636 aa29.74■■■□□ 2.35
CCDC28A-203ENST00000617445 MYO3AQ8NEV4 1616 aa29.73■■■□□ 2.35
CCDC28A-203ENST00000617445 CAMSAP1Q5T5Y3 1602 aa29.71■■■□□ 2.35
CCDC28A-203ENST00000617445 EIF2AK4Q9P2K8 1649 aaKnown RBP29.71■■■□□ 2.35
CCDC28A-203ENST00000617445 PZPP20742 1482 aa29.71■■■□□ 2.35
CCDC28A-203ENST00000617445 SHANK2Q9UPX8 1470 aa29.71■■■□□ 2.35
CCDC28A-203ENST00000617445 FGD6Q6ZV73 1430 aa29.71■■■□□ 2.35
CCDC28A-203ENST00000617445 CEP170BQ9Y4F5 1589 aaPredicted RBP29.7■■■□□ 2.35
CCDC28A-203ENST00000617445 RNF17Q9BXT8 1623 aaKnown RBP29.7■■■□□ 2.34
CCDC28A-203ENST00000617445 TCOF1Q13428 1488 aaKnown RBP29.68■■■□□ 2.34
CCDC28A-203ENST00000617445 DUOX2Q9NRD8 1548 aa29.68■■■□□ 2.34
CCDC28A-203ENST00000617445 ABCC5O15440 1437 aa29.68■■■□□ 2.34
CCDC28A-203ENST00000617445 PLA2R1Q13018 1463 aa29.68■■■□□ 2.34
CCDC28A-203ENST00000617445 PKD2Q13563 968 aa29.67■■■□□ 2.34
CCDC28A-203ENST00000617445 A2ML1A8K2U0 1454 aa29.66■■■□□ 2.34
CCDC28A-203ENST00000617445 TNRQ92752 1358 aa29.65■■■□□ 2.34
CCDC28A-203ENST00000617445 CROCC2H7BZ55 1655 aa29.65■■■□□ 2.34
CCDC28A-203ENST00000617445 DAPK1P53355 1430 aa29.63■■■□□ 2.33
CCDC28A-203ENST00000617445 FBXO31Q5XUX0 539 aaPredicted RBP29.63■■■□□ 2.33
CCDC28A-203ENST00000617445 DNMT1P26358 1616 aaKnown RBP29.63■■■□□ 2.33
CCDC28A-203ENST00000617445 KIF15Q9NS87 1388 aa29.63■■■□□ 2.33
CCDC28A-203ENST00000617445 ZC3H13Q5T200 1668 aaKnown RBP29.63■■■□□ 2.33
CCDC28A-203ENST00000617445 ERBINQ96RT1 1412 aa29.6■■■□□ 2.33
CCDC28A-203ENST00000617445 NCKAP5LQ9HCH0 1330 aa29.59■■■□□ 2.33
CCDC28A-203ENST00000617445 ABCC3O15438 1527 aa29.59■■■□□ 2.33
CCDC28A-203ENST00000617445 RRP7BPQ9NSQ0 103 aa29.58■■■□□ 2.33
CCDC28A-203ENST00000617445 NLRP1Q9C000 1473 aa29.56■■■□□ 2.32
CCDC28A-203ENST00000617445 ANKRD30AQ9BXX3 1397 aa29.56■■■□□ 2.32
CCDC28A-203ENST00000617445 MROH1Q8NDA8 1641 aa29.55■■■□□ 2.32
CCDC28A-203ENST00000617445 THEMISQ8N1K5 641 aaPredicted RBP29.52■■■□□ 2.32
CCDC28A-203ENST00000617445 LTBP4Q8N2S1 1624 aa29.49■■■□□ 2.31
CCDC28A-203ENST00000617445 SPATA31D1Q6ZQQ2 1576 aa29.49■■■□□ 2.31
CCDC28A-203ENST00000617445 PRDM15P57071 1507 aaPredicted RBP29.49■■■□□ 2.31
CCDC28A-203ENST00000617445 CHIC2Q9UKJ5 165 aa29.48■■■□□ 2.31
CCDC28A-203ENST00000617445 FAM50AQ14320 339 aaKnown RBP29.47■■■□□ 2.31
CCDC28A-203ENST00000617445 CEP152O94986 1710 aa29.47■■■□□ 2.31
CCDC28A-203ENST00000617445 KANK1Q14678 1352 aa29.46■■■□□ 2.31
CCDC28A-203ENST00000617445 ERVK-7P63135 1459 aa29.46■■■□□ 2.31
CCDC28A-203ENST00000617445 IQSEC2Q5JU85 1478 aa29.46■■■□□ 2.31
CCDC28A-203ENST00000617445 ARHGAP31Q2M1Z3 1444 aa29.45■■■□□ 2.31
CCDC28A-203ENST00000617445 UGGT1Q9NYU2 1555 aa29.45■■■□□ 2.31
CCDC28A-203ENST00000617445 ANKLE2Q86XL3 938 aa29.45■■■□□ 2.31
CCDC28A-203ENST00000617445 DEPDC5O75140 1603 aa29.45■■■□□ 2.3
CCDC28A-203ENST00000617445 ADGRL2O95490 1459 aa29.44■■■□□ 2.3
CCDC28A-203ENST00000617445 CFAP65Q6ZU64 1925 aaKnown RBP29.43■■■□□ 2.3
CCDC28A-203ENST00000617445 POLR1AO95602 1720 aaPredicted RBP29.42■■■□□ 2.3
CCDC28A-203ENST00000617445 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.41■■■□□ 2.3
CCDC28A-203ENST00000617445 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.4■■■□□ 2.3
CCDC28A-203ENST00000617445 ZNF335Q9H4Z2 1342 aaPredicted RBP29.39■■■□□ 2.3
CCDC28A-203ENST00000617445 NEURL4Q96JN8 1562 aa29.35■■■□□ 2.29
CCDC28A-203ENST00000617445 LMTK2Q8IWU2 1503 aa29.35■■■□□ 2.29
CCDC28A-203ENST00000617445 VWDEQ8N2E2 1590 aa29.34■■■□□ 2.29
CCDC28A-203ENST00000617445 MED14O60244 1454 aa29.33■■■□□ 2.29
CCDC28A-203ENST00000617445 ANKRD50Q9ULJ7 1429 aa29.31■■■□□ 2.28
CCDC28A-203ENST00000617445 NPHP4O75161 1426 aaPredicted RBP29.28■■■□□ 2.28
CCDC28A-203ENST00000617445 UBR1Q8IWV7 1749 aa29.28■■■□□ 2.28
CCDC28A-203ENST00000617445 ROCK1Q13464 1354 aa29.26■■■□□ 2.27
CCDC28A-203ENST00000617445 CPS1P31327 1500 aa29.24■■■□□ 2.27
CCDC28A-203ENST00000617445 IQGAP1P46940 1657 aa29.22■■■□□ 2.27
CCDC28A-203ENST00000617445 EFCAB6Q5THR3 1501 aa29.21■■■□□ 2.27
CCDC28A-203ENST00000617445 SLIT1O75093 1534 aa29.2■■■□□ 2.26
CCDC28A-203ENST00000617445 KDM5AP29375 1690 aaKnown RBP29.19■■■□□ 2.26
CCDC28A-203ENST00000617445 RPRD2Q5VT52 1461 aaKnown RBP29.19■■■□□ 2.26
CCDC28A-203ENST00000617445 ARHGAP23Q9P227 1491 aa29.19■■■□□ 2.26
CCDC28A-203ENST00000617445 SCAF11Q99590 1463 aaKnown RBP29.18■■■□□ 2.26
CCDC28A-203ENST00000617445 STAG3Q9UJ98 1225 aa29.18■■■□□ 2.26
CCDC28A-203ENST00000617445 EID1Q9Y6B2 187 aa29.18■■■□□ 2.26
CCDC28A-203ENST00000617445 NOS1P29475 1434 aa29.18■■■□□ 2.26
CCDC28A-203ENST00000617445 SLC52A1Q9NWF4 448 aa29.17■■■□□ 2.26
CCDC28A-203ENST00000617445 PIK3C2BO00750 1634 aa29.16■■■□□ 2.26
CCDC28A-203ENST00000617445 UBAP1LF5GYI3 381 aa29.16■■■□□ 2.26
CCDC28A-203ENST00000617445 IDI1Q13907 227 aa29.16■■■□□ 2.26
CCDC28A-203ENST00000617445 TXNDC2Q86VQ3 553 aa29.16■■■□□ 2.26
CCDC28A-203ENST00000617445 PPARGC1BQ86YN6 1023 aaKnown RBP29.15■■■□□ 2.26
CCDC28A-203ENST00000617445 TET3O43151 1660 aa29.13■■■□□ 2.25
CCDC28A-203ENST00000617445 LTKP29376 864 aa29.13■■■□□ 2.25
CCDC28A-203ENST00000617445 UNC13BO14795 1591 aa29.13■■■□□ 2.25
CCDC28A-203ENST00000617445 TMEM2Q9UHN6 1383 aa29.13■■■□□ 2.25
CCDC28A-203ENST00000617445 SYNMO15061 1565 aa29.12■■■□□ 2.25
CCDC28A-203ENST00000617445 GCC2Q8IWJ2 1684 aa29.09■■■□□ 2.25
CCDC28A-203ENST00000617445 ITGAEP38570 1179 aa29.08■■■□□ 2.25
CCDC28A-203ENST00000617445 TOM1O60784 492 aa29.07■■■□□ 2.24
CCDC28A-203ENST00000617445 ADGRB3O60242 1522 aa29.04■■■□□ 2.24
CCDC28A-203ENST00000617445 RRBP1Q9P2E9 1410 aaKnown RBP29.03■■■□□ 2.24
CCDC28A-203ENST00000617445 IQGAP3Q86VI3 1631 aa29.02■■■□□ 2.24
CCDC28A-203ENST00000617445 NUP155O75694 1391 aa29.01■■■□□ 2.23
CCDC28A-203ENST00000617445 STRCP1A6NGW2 1772 aa28.99■■■□□ 2.23
CCDC28A-203ENST00000617445 HDGFP51858 240 aaKnown RBP28.99■■■□□ 2.23
CCDC28A-203ENST00000617445 LRRC7Q96NW7 1537 aa28.97■■■□□ 2.23
CCDC28A-203ENST00000617445 E9PCH4 1651 aa28.96■■■□□ 2.23
CCDC28A-203ENST00000617445 SCAF1Q9H7N4 1312 aaKnown RBP28.91■■■□□ 2.22
CCDC28A-203ENST00000617445 TMEM131LA2VDJ0 1609 aa28.91■■■□□ 2.22
CCDC28A-203ENST00000617445 PIP4K2BP78356 416 aa28.9■■■□□ 2.22
CCDC28A-203ENST00000617445 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.89■■■□□ 2.22
CCDC28A-203ENST00000617445 MYO5BQ9ULV0 1848 aa28.89■■■□□ 2.22
CCDC28A-203ENST00000617445 ZFYVE9O95405 1425 aa28.88■■■□□ 2.21
CCDC28A-203ENST00000617445 KCNA6P17658 529 aa28.88■■■□□ 2.21
CCDC28A-203ENST00000617445 RIMS2Q9UQ26 1411 aa28.86■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms