RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 GCC2Q8IWJ2 1684 aa19.54■□□□□ 0.72
SHROOM1-208ENST00000617339 SYCP2Q9BX26 1530 aa19.53■□□□□ 0.72
SHROOM1-208ENST00000617339 CHD1O14646 1710 aa19.53■□□□□ 0.72
SHROOM1-208ENST00000617339 RSPH4AQ5TD94 716 aa19.52■□□□□ 0.71
SHROOM1-208ENST00000617339 STAG3Q9UJ98 1225 aa19.51■□□□□ 0.71
SHROOM1-208ENST00000617339 TEX14Q8IWB6 1497 aa19.51■□□□□ 0.71
SHROOM1-208ENST00000617339 CCDC141Q6ZP82 1450 aa19.49■□□□□ 0.71
SHROOM1-208ENST00000617339 TRAPPC8Q9Y2L5 1435 aa19.49■□□□□ 0.71
SHROOM1-208ENST00000617339 MBD5Q9P267 1494 aa19.49■□□□□ 0.71
SHROOM1-208ENST00000617339 SCAPERQ9BY12 1400 aa19.48■□□□□ 0.71
SHROOM1-208ENST00000617339 PAK3O75914 559 aaPredicted RBP19.46■□□□□ 0.71
SHROOM1-208ENST00000617339 RTN4Q9NQC3 1192 aaKnown RBP19.46■□□□□ 0.71
SHROOM1-208ENST00000617339 RAPGEF3O95398 923 aa19.46■□□□□ 0.71
SHROOM1-208ENST00000617339 ESF1Q9H501 851 aaKnown RBP19.46■□□□□ 0.71
SHROOM1-208ENST00000617339 CDC42BPAQ5VT25 1732 aa19.45■□□□□ 0.7
SHROOM1-208ENST00000617339 PANK3Q9H999 370 aa19.44■□□□□ 0.7
SHROOM1-208ENST00000617339 ITSN2Q9NZM3 1697 aa19.44■□□□□ 0.7
SHROOM1-208ENST00000617339 SAFB2Q14151 953 aaKnown RBP eCLIP19.44■□□□□ 0.7
SHROOM1-208ENST00000617339 NOP58Q9Y2X3 529 aaKnown RBP19.43■□□□□ 0.7
SHROOM1-208ENST00000617339 PPP4R2Q9NY27 417 aa19.43■□□□□ 0.7
SHROOM1-208ENST00000617339 ARID4BQ4LE39 1312 aaPredicted RBP19.42■□□□□ 0.7
SHROOM1-208ENST00000617339 TNNT2P45379 298 aaPredicted RBP19.42■□□□□ 0.7
SHROOM1-208ENST00000617339 TTC37Q6PGP7 1564 aa19.42■□□□□ 0.7
SHROOM1-208ENST00000617339 TRHP20396 242 aaPredicted RBP19.42■□□□□ 0.7
SHROOM1-208ENST00000617339 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.41■□□□□ 0.7
SHROOM1-208ENST00000617339 CCDC136Q96JN2 1154 aa19.4■□□□□ 0.7
SHROOM1-208ENST00000617339 ARHGEF12Q9NZN5 1544 aa19.4■□□□□ 0.7
SHROOM1-208ENST00000617339 SAMD9LQ8IVG5 1584 aa19.4■□□□□ 0.7
SHROOM1-208ENST00000617339 CFAP70Q5T0N1 1121 aa19.38■□□□□ 0.69
SHROOM1-208ENST00000617339 SPATA31E1Q6ZUB1 1445 aa19.38■□□□□ 0.69
SHROOM1-208ENST00000617339 ADGRL2O95490 1459 aa19.38■□□□□ 0.69
SHROOM1-208ENST00000617339 RTL5Q5HYW3 569 aaPredicted RBP19.37■□□□□ 0.69
SHROOM1-208ENST00000617339 FAM135AQ9P2D6 1515 aa19.36■□□□□ 0.69
SHROOM1-208ENST00000617339 TMEM132EQ6IEE7 984 aa19.35■□□□□ 0.69
SHROOM1-208ENST00000617339 PLCH2O75038 1416 aa19.34■□□□□ 0.69
SHROOM1-208ENST00000617339 ABCC2Q92887 1545 aa19.34■□□□□ 0.69
SHROOM1-208ENST00000617339 TMF1P82094 1093 aa19.34■□□□□ 0.69
SHROOM1-208ENST00000617339 TRAK1Q9UPV9 953 aa19.33■□□□□ 0.69
SHROOM1-208ENST00000617339 STK26Q9P289 416 aa19.31■□□□□ 0.68
SHROOM1-208ENST00000617339 CDC42BPBQ9Y5S2 1711 aa19.31■□□□□ 0.68
SHROOM1-208ENST00000617339 FAM69CQ0P6D2 419 aa19.3■□□□□ 0.68
SHROOM1-208ENST00000617339 PNISRQ8TF01 805 aaKnown RBP19.3■□□□□ 0.68
SHROOM1-208ENST00000617339 IL27Q8NEV9 243 aa19.3■□□□□ 0.68
SHROOM1-208ENST00000617339 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.3■□□□□ 0.68
SHROOM1-208ENST00000617339 KNSTRNQ9Y448 316 aa19.3■□□□□ 0.68
SHROOM1-208ENST00000617339 WASHC2CQ9Y4E1 1318 aa19.3■□□□□ 0.68
SHROOM1-208ENST00000617339 DISP3Q9P2K9 1392 aa19.29■□□□□ 0.68
SHROOM1-208ENST00000617339 DHX29Q7Z478 1369 aaKnown RBP19.29■□□□□ 0.68
SHROOM1-208ENST00000617339 PLA2R1Q13018 1463 aa19.29■□□□□ 0.68
SHROOM1-208ENST00000617339 CDCA7LQ96GN5 454 aa19.29■□□□□ 0.68
SHROOM1-208ENST00000617339 NPM2Q86SE8 214 aaKnown RBP19.28■□□□□ 0.68
SHROOM1-208ENST00000617339 FANCAO15360 1455 aa19.27■□□□□ 0.67
SHROOM1-208ENST00000617339 KANK1Q14678 1352 aa19.26■□□□□ 0.67
SHROOM1-208ENST00000617339 ADGBQ8N7X0 1667 aa19.26■□□□□ 0.67
SHROOM1-208ENST00000617339 ANP32AP39687 249 aaKnown RBP19.26■□□□□ 0.67
SHROOM1-208ENST00000617339 ZBED9Q6R2W3 1325 aa19.25■□□□□ 0.67
SHROOM1-208ENST00000617339 ADGRF5Q8IZF2 1346 aa19.25■□□□□ 0.67
SHROOM1-208ENST00000617339 ADCY10Q96PN6 1610 aa19.25■□□□□ 0.67
SHROOM1-208ENST00000617339 ASXL2Q76L83 1435 aa19.25■□□□□ 0.67
SHROOM1-208ENST00000617339 CCDC146Q8IYE0 955 aa19.25■□□□□ 0.67
SHROOM1-208ENST00000617339 SHANK2Q9UPX8 1470 aa19.25■□□□□ 0.67
SHROOM1-208ENST00000617339 PLIN1O60240 522 aa19.24■□□□□ 0.67
SHROOM1-208ENST00000617339 PLEKHG5O94827 1062 aa19.24■□□□□ 0.67
SHROOM1-208ENST00000617339 NEUROD2Q15784 382 aa19.24■□□□□ 0.67
SHROOM1-208ENST00000617339 TESK2Q96S53 571 aa19.24■□□□□ 0.67
SHROOM1-208ENST00000617339 BCORL1Q5H9F3 1711 aa19.24■□□□□ 0.67
SHROOM1-208ENST00000617339 ZBTB47Q9UFB7 747 aaPredicted RBP19.24■□□□□ 0.67
SHROOM1-208ENST00000617339 KTN1Q86UP2 1357 aaKnown RBP19.23■□□□□ 0.67
SHROOM1-208ENST00000617339 MYBBP1AQ9BQG0 1328 aaKnown RBP19.22■□□□□ 0.67
SHROOM1-208ENST00000617339 ADGRL1O94910 1474 aa19.22■□□□□ 0.67
SHROOM1-208ENST00000617339 CFAP65Q6ZU64 1925 aaKnown RBP19.22■□□□□ 0.67
SHROOM1-208ENST00000617339 PRAG1Q86YV5 1406 aa19.22■□□□□ 0.67
SHROOM1-208ENST00000617339 A2MP01023 1474 aa19.21■□□□□ 0.67
SHROOM1-208ENST00000617339 NLRP13Q86W25 1043 aa19.19■□□□□ 0.66
SHROOM1-208ENST00000617339 ZCCHC11Q5TAX3 1644 aaKnown RBP19.19■□□□□ 0.66
SHROOM1-208ENST00000617339 PREX2Q70Z35 1606 aa19.19■□□□□ 0.66
SHROOM1-208ENST00000617339 RALBP1Q15311 655 aa19.19■□□□□ 0.66
SHROOM1-208ENST00000617339 LAS1LQ9Y4W2 734 aaKnown RBP19.19■□□□□ 0.66
SHROOM1-208ENST00000617339 CROCC2H7BZ55 1655 aa19.18■□□□□ 0.66
SHROOM1-208ENST00000617339 RALGAPBQ86X10 1494 aa19.18■□□□□ 0.66
SHROOM1-208ENST00000617339 WDR43Q15061 677 aaKnown RBP eCLIP19.18■□□□□ 0.66
SHROOM1-208ENST00000617339 NUDCQ9Y266 331 aa19.18■□□□□ 0.66
SHROOM1-208ENST00000617339 ADAMTS8Q9UP79 889 aa19.17■□□□□ 0.66
SHROOM1-208ENST00000617339 WDR7Q9Y4E6 1490 aa19.17■□□□□ 0.66
SHROOM1-208ENST00000617339 PER1O15534 1290 aaPredicted RBP19.16■□□□□ 0.66
SHROOM1-208ENST00000617339 ERICH6BQ5W0A0 696 aa19.16■□□□□ 0.66
SHROOM1-208ENST00000617339 CD109Q6YHK3 1445 aa19.15■□□□□ 0.66
SHROOM1-208ENST00000617339 IPO9Q96P70 1041 aaKnown RBP19.15■□□□□ 0.66
SHROOM1-208ENST00000617339 ARHGEF5Q12774 1597 aa19.15■□□□□ 0.66
SHROOM1-208ENST00000617339 UGGT1Q9NYU2 1555 aa19.13■□□□□ 0.65
SHROOM1-208ENST00000617339 ERBINQ96RT1 1412 aa19.13■□□□□ 0.65
SHROOM1-208ENST00000617339 UHRF1BP1Q6BDS2 1440 aa19.12■□□□□ 0.65
SHROOM1-208ENST00000617339 MYO5CQ9NQX4 1742 aa19.12■□□□□ 0.65
SHROOM1-208ENST00000617339 SLC12A5Q9H2X9 1139 aa19.12■□□□□ 0.65
SHROOM1-208ENST00000617339 DUOX2Q9NRD8 1548 aa19.11■□□□□ 0.65
SHROOM1-208ENST00000617339 FBXO31Q5XUX0 539 aaPredicted RBP19.11■□□□□ 0.65
SHROOM1-208ENST00000617339 SKAP1Q86WV1 359 aa19.11■□□□□ 0.65
SHROOM1-208ENST00000617339 KDM5CP41229 1560 aa19.11■□□□□ 0.65
SHROOM1-208ENST00000617339 EXOC6Q8TAG9 804 aa19.09■□□□□ 0.65
SHROOM1-208ENST00000617339 EIF5BO60841 1220 aaKnown RBP19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms