RNA–Protein interactions for RNA: ENST00000616383.1

MMP28-206, Transcript of matrix metallopeptidase 28, humanhuman

TSL 3

Gene MMP28, Length 696 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-206ENST00000616383 HECW2Q9P2P5 1572 aa16.47■□□□□ 0.23
MMP28-206ENST00000616383 HFM1A2PYH4 1435 aa16.46■□□□□ 0.23
MMP28-206ENST00000616383 ATP7AQ04656 1500 aa16.46■□□□□ 0.23
MMP28-206ENST00000616383 ATF5Q9Y2D1 282 aaPredicted RBP16.46■□□□□ 0.23
MMP28-206ENST00000616383 KIDINS220Q9ULH0 1771 aa16.46■□□□□ 0.22
MMP28-206ENST00000616383 NAIPQ13075 1403 aa16.45■□□□□ 0.22
MMP28-206ENST00000616383 ANKRD30AQ9BXX3 1397 aa16.44■□□□□ 0.22
MMP28-206ENST00000616383 TSPY4P0CV99 314 aa16.44■□□□□ 0.22
MMP28-206ENST00000616383 TSPY10P0CW01 314 aa16.44■□□□□ 0.22
MMP28-206ENST00000616383 KDM6BO15054 1643 aa16.44■□□□□ 0.22
MMP28-206ENST00000616383 NCOA1Q15788 1441 aa16.44■□□□□ 0.22
MMP28-206ENST00000616383 SETD5Q9C0A6 1442 aa16.44■□□□□ 0.22
MMP28-206ENST00000616383 ZMYM4Q5VZL5 1548 aa16.43■□□□□ 0.22
MMP28-206ENST00000616383 AFAP1Q8N556 730 aa16.42■□□□□ 0.22
MMP28-206ENST00000616383 RRP7BPQ9NSQ0 103 aa16.42■□□□□ 0.22
MMP28-206ENST00000616383 RTEL1-TNFRSF6BF6WH68 1400 aa16.41■□□□□ 0.22
MMP28-206ENST00000616383 SPAG9O60271 1321 aaKnown RBP16.41■□□□□ 0.22
MMP28-206ENST00000616383 ABCA6Q8N139 1617 aa16.41■□□□□ 0.22
MMP28-206ENST00000616383 RAB3GAP2Q9H2M9 1393 aa16.4■□□□□ 0.22
MMP28-206ENST00000616383 KIF15Q9NS87 1388 aa16.39■□□□□ 0.21
MMP28-206ENST00000616383 MLH3Q9UHC1 1453 aa16.39■□□□□ 0.21
MMP28-206ENST00000616383 AKT1S1Q96B36 256 aa16.38■□□□□ 0.21
MMP28-206ENST00000616383 DUOX2Q9NRD8 1548 aa16.38■□□□□ 0.21
MMP28-206ENST00000616383 COL17A1Q9UMD9 1497 aaPredicted RBP16.37■□□□□ 0.21
MMP28-206ENST00000616383 RAPGEF3O95398 923 aa16.37■□□□□ 0.21
MMP28-206ENST00000616383 DIP2CQ9Y2E4 1556 aa16.37■□□□□ 0.21
MMP28-206ENST00000616383 ANKRD50Q9ULJ7 1429 aa16.35■□□□□ 0.21
MMP28-206ENST00000616383 EIF2AK4Q9P2K8 1649 aaKnown RBP16.34■□□□□ 0.21
MMP28-206ENST00000616383 MYT1LQ9UL68 1186 aa16.33■□□□□ 0.2
MMP28-206ENST00000616383 ARHGEF40Q8TER5 1519 aa16.33■□□□□ 0.2
MMP28-206ENST00000616383 UNC13BO14795 1591 aa16.32■□□□□ 0.2
MMP28-206ENST00000616383 MAGI2Q86UL8 1455 aa16.32■□□□□ 0.2
MMP28-206ENST00000616383 ERBINQ96RT1 1412 aa16.32■□□□□ 0.2
MMP28-206ENST00000616383 YEATS2Q9ULM3 1422 aa16.31■□□□□ 0.2
MMP28-206ENST00000616383 BCORL1Q5H9F3 1711 aa16.3■□□□□ 0.2
MMP28-206ENST00000616383 DEPDC5O75140 1603 aa16.3■□□□□ 0.2
MMP28-206ENST00000616383 A2MP01023 1474 aa16.29■□□□□ 0.2
MMP28-206ENST00000616383 KDM4FA0A1W2PPD8 638 aa16.29■□□□□ 0.2
MMP28-206ENST00000616383 HRCP23327 699 aa16.29■□□□□ 0.2
MMP28-206ENST00000616383 REREQ9P2R6 1566 aa16.27■□□□□ 0.2
MMP28-206ENST00000616383 RNF17Q9BXT8 1623 aaKnown RBP16.27■□□□□ 0.19
MMP28-206ENST00000616383 KDM5DQ9BY66 1539 aa16.26■□□□□ 0.19
MMP28-206ENST00000616383 DHX29Q7Z478 1369 aaKnown RBP16.26■□□□□ 0.19
MMP28-206ENST00000616383 SIGLEC1Q9BZZ2 1709 aa16.25■□□□□ 0.19
MMP28-206ENST00000616383 IQGAP3Q86VI3 1631 aa16.25■□□□□ 0.19
MMP28-206ENST00000616383 DHX57Q6P158 1386 aaKnown RBP16.25■□□□□ 0.19
MMP28-206ENST00000616383 MROH1Q8NDA8 1641 aa16.24■□□□□ 0.19
MMP28-206ENST00000616383 ATP10AO60312 1499 aa16.23■□□□□ 0.19
MMP28-206ENST00000616383 REM2Q8IYK8 340 aaPredicted RBP16.23■□□□□ 0.19
MMP28-206ENST00000616383 TRIM52Q96A61 297 aa16.22■□□□□ 0.19
MMP28-206ENST00000616383 PRDM15P57071 1507 aaPredicted RBP16.22■□□□□ 0.19
MMP28-206ENST00000616383 PZPP20742 1482 aa16.22■□□□□ 0.19
MMP28-206ENST00000616383 ACIN1Q9UKV3 1341 aaKnown RBP16.21■□□□□ 0.19
MMP28-206ENST00000616383 CEP152O94986 1710 aa16.2■□□□□ 0.18
MMP28-206ENST00000616383 CCER1Q8TC90 406 aaPredicted RBP16.2■□□□□ 0.18
MMP28-206ENST00000616383 FAM135AQ9P2D6 1515 aa16.19■□□□□ 0.18
MMP28-206ENST00000616383 AGLP35573 1532 aa16.19■□□□□ 0.18
MMP28-206ENST00000616383 VWDEQ8N2E2 1590 aa16.18■□□□□ 0.18
MMP28-206ENST00000616383 NUP155O75694 1391 aa16.17■□□□□ 0.18
MMP28-206ENST00000616383 KIF3BO15066 747 aa16.17■□□□□ 0.18
MMP28-206ENST00000616383 TET3O43151 1660 aa16.17■□□□□ 0.18
MMP28-206ENST00000616383 ZC3H13Q5T200 1668 aaKnown RBP16.16■□□□□ 0.18
MMP28-206ENST00000616383 E9PCH4 1651 aa16.14■□□□□ 0.17
MMP28-206ENST00000616383 KANK1Q14678 1352 aa16.13■□□□□ 0.17
MMP28-206ENST00000616383 MPHOSPH9Q99550 1183 aa16.13■□□□□ 0.17
MMP28-206ENST00000616383 CAMSAP1Q5T5Y3 1602 aa16.12■□□□□ 0.17
MMP28-206ENST00000616383 ZBTB22O15209 634 aa16.12■□□□□ 0.17
MMP28-206ENST00000616383 PIP4P2Q8N4L2 257 aa16.12■□□□□ 0.17
MMP28-206ENST00000616383 SP7Q8TDD2 431 aaPredicted RBP16.12■□□□□ 0.17
MMP28-206ENST00000616383 ABCC3O15438 1527 aa16.11■□□□□ 0.17
MMP28-206ENST00000616383 EFCAB6Q5THR3 1501 aa16.1■□□□□ 0.17
MMP28-206ENST00000616383 LMTK2Q8IWU2 1503 aa16.1■□□□□ 0.17
MMP28-206ENST00000616383 CLTCQ00610 1675 aaKnown RBP16.1■□□□□ 0.17
MMP28-206ENST00000616383 CLSPNQ9HAW4 1339 aa16.09■□□□□ 0.17
MMP28-206ENST00000616383 SPHKAPQ2M3C7 1700 aa16.08■□□□□ 0.17
MMP28-206ENST00000616383 GGT6Q6P531 493 aa16.08■□□□□ 0.16
MMP28-206ENST00000616383 PITPNM1O00562 1244 aa16.07■□□□□ 0.16
MMP28-206ENST00000616383 PKD2Q13563 968 aa16.06■□□□□ 0.16
MMP28-206ENST00000616383 FER1L4A9Z1Z3 1794 aa16.05■□□□□ 0.16
MMP28-206ENST00000616383 CFAP65Q6ZU64 1925 aaKnown RBP16.05■□□□□ 0.16
MMP28-206ENST00000616383 ARID4BQ4LE39 1312 aaPredicted RBP16.03■□□□□ 0.16
MMP28-206ENST00000616383 MROH2AA6NES4 1674 aa16.03■□□□□ 0.16
MMP28-206ENST00000616383 HAX1O00165 279 aa16.03■□□□□ 0.16
MMP28-206ENST00000616383 ANKRD30BQ9BXX2 1392 aa16.02■□□□□ 0.16
MMP28-206ENST00000616383 ATXN8OSP0DMR3 200 aa16.02■□□□□ 0.16
MMP28-206ENST00000616383 WASHC2CQ9Y4E1 1318 aa16.01■□□□□ 0.15
MMP28-206ENST00000616383 MLECQ14165 292 aa16.01■□□□□ 0.15
MMP28-206ENST00000616383 RPRD2Q5VT52 1461 aaKnown RBP16.01■□□□□ 0.15
MMP28-206ENST00000616383 PREX1Q8TCU6 1659 aa16.01■□□□□ 0.15
MMP28-206ENST00000616383 TRPM2O94759 1503 aa16■□□□□ 0.15
MMP28-206ENST00000616383 NPATQ14207 1427 aa15.99■□□□□ 0.15
MMP28-206ENST00000616383 PLA2R1Q13018 1463 aa15.98■□□□□ 0.15
MMP28-206ENST00000616383 FBXO41Q8TF61 875 aa15.98■□□□□ 0.15
MMP28-206ENST00000616383 SIN3AQ96ST3 1273 aa15.98■□□□□ 0.15
MMP28-206ENST00000616383 CLTCL1P53675 1640 aa15.97■□□□□ 0.15
MMP28-206ENST00000616383 MADDQ8WXG6 1647 aa15.97■□□□□ 0.15
MMP28-206ENST00000616383 ARHGAP31Q2M1Z3 1444 aa15.97■□□□□ 0.15
MMP28-206ENST00000616383 ADAMTSL3P82987 1691 aa15.97■□□□□ 0.15
MMP28-206ENST00000616383 RIMS1Q86UR5 1692 aaKnown RBP15.96■□□□□ 0.15
MMP28-206ENST00000616383 PTPRTO14522 1441 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms