RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 NCOA1Q15788 1441 aa8.79□□□□□ -1
CPNE3-208ENST00000614678 WASHC2CQ9Y4E1 1318 aa8.79□□□□□ -1
CPNE3-208ENST00000614678 MAST1Q9Y2H9 1570 aa8.78□□□□□ -1
CPNE3-208ENST00000614678 CEP152O94986 1710 aa8.78□□□□□ -1
CPNE3-208ENST00000614678 RSPH4AQ5TD94 716 aa8.78□□□□□ -1
CPNE3-208ENST00000614678 STRCQ7RTU9 1775 aa8.75□□□□□ -1.01
CPNE3-208ENST00000614678 NCKAP5LQ9HCH0 1330 aa8.75□□□□□ -1.01
CPNE3-208ENST00000614678 ABCC3O15438 1527 aa8.75□□□□□ -1.01
CPNE3-208ENST00000614678 DUOX2Q9NRD8 1548 aa8.74□□□□□ -1.01
CPNE3-208ENST00000614678 SHANK2Q9UPX8 1470 aa8.74□□□□□ -1.01
CPNE3-208ENST00000614678 ANKRD30AQ9BXX3 1397 aa8.74□□□□□ -1.01
CPNE3-208ENST00000614678 PREX1Q8TCU6 1659 aa8.74□□□□□ -1.01
CPNE3-208ENST00000614678 SETD1BQ9UPS6 1966 aaKnown RBP8.73□□□□□ -1.01
CPNE3-208ENST00000614678 KDM5DQ9BY66 1539 aa8.73□□□□□ -1.01
CPNE3-208ENST00000614678 RRBP1Q9P2E9 1410 aaKnown RBP8.73□□□□□ -1.01
CPNE3-208ENST00000614678 ANKRD50Q9ULJ7 1429 aa8.73□□□□□ -1.01
CPNE3-208ENST00000614678 RNF17Q9BXT8 1623 aaKnown RBP8.73□□□□□ -1.01
CPNE3-208ENST00000614678 UHRF1BP1Q6BDS2 1440 aa8.72□□□□□ -1.01
CPNE3-208ENST00000614678 MYO3AQ8NEV4 1616 aa8.72□□□□□ -1.01
CPNE3-208ENST00000614678 NPATQ14207 1427 aa8.72□□□□□ -1.01
CPNE3-208ENST00000614678 ADGRL2O95490 1459 aa8.72□□□□□ -1.01
CPNE3-208ENST00000614678 MROH2AA6NES4 1674 aa8.72□□□□□ -1.01
CPNE3-208ENST00000614678 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.71□□□□□ -1.01
CPNE3-208ENST00000614678 FOXD1Q16676 465 aa8.71□□□□□ -1.02
CPNE3-208ENST00000614678 UGGT1Q9NYU2 1555 aa8.71□□□□□ -1.02
CPNE3-208ENST00000614678 CNTLNQ9NXG0 1405 aa8.71□□□□□ -1.02
CPNE3-208ENST00000614678 CAMSAP1Q5T5Y3 1602 aa8.71□□□□□ -1.02
CPNE3-208ENST00000614678 ERBINQ96RT1 1412 aa8.71□□□□□ -1.02
CPNE3-208ENST00000614678 PRDM15P57071 1507 aaPredicted RBP8.7□□□□□ -1.02
CPNE3-208ENST00000614678 PZPP20742 1482 aa8.7□□□□□ -1.02
CPNE3-208ENST00000614678 NUTM2DQ5VT03 806 aaPredicted RBP8.7□□□□□ -1.02
CPNE3-208ENST00000614678 DEPDC5O75140 1603 aa8.7□□□□□ -1.02
CPNE3-208ENST00000614678 EIF2AK4Q9P2K8 1649 aaKnown RBP8.69□□□□□ -1.02
CPNE3-208ENST00000614678 TNRQ92752 1358 aa8.69□□□□□ -1.02
CPNE3-208ENST00000614678 CEP170BQ9Y4F5 1589 aaPredicted RBP8.69□□□□□ -1.02
CPNE3-208ENST00000614678 ERVK-7P63135 1459 aa8.68□□□□□ -1.02
CPNE3-208ENST00000614678 NAIPQ13075 1403 aa8.68□□□□□ -1.02
CPNE3-208ENST00000614678 IDI1Q13907 227 aa8.68□□□□□ -1.02
CPNE3-208ENST00000614678 ZNF335Q9H4Z2 1342 aaPredicted RBP8.67□□□□□ -1.02
CPNE3-208ENST00000614678 ILDR1Q86SU0 546 aaPredicted RBP8.67□□□□□ -1.02
CPNE3-208ENST00000614678 VWDEQ8N2E2 1590 aa8.67□□□□□ -1.02
CPNE3-208ENST00000614678 NUP155O75694 1391 aa8.67□□□□□ -1.02
CPNE3-208ENST00000614678 LTKP29376 864 aa8.67□□□□□ -1.02
CPNE3-208ENST00000614678 SYNMO15061 1565 aa8.67□□□□□ -1.02
CPNE3-208ENST00000614678 RBM33Q96EV2 1170 aaKnown RBP8.65□□□□□ -1.02
CPNE3-208ENST00000614678 PPP6R1Q9UPN7 881 aa8.65□□□□□ -1.02
CPNE3-208ENST00000614678 SPATA31D1Q6ZQQ2 1576 aa8.65□□□□□ -1.02
CPNE3-208ENST00000614678 ROCK1Q13464 1354 aa8.65□□□□□ -1.02
CPNE3-208ENST00000614678 E9PCH4 1651 aa8.65□□□□□ -1.02
CPNE3-208ENST00000614678 MYO5BQ9ULV0 1848 aa8.65□□□□□ -1.03
CPNE3-208ENST00000614678 PIK3C2BO00750 1634 aa8.64□□□□□ -1.03
CPNE3-208ENST00000614678 ZNF142P52746 1687 aaPredicted RBP8.64□□□□□ -1.03
CPNE3-208ENST00000614678 EFCAB6Q5THR3 1501 aa8.64□□□□□ -1.03
CPNE3-208ENST00000614678 TRIM52Q96A61 297 aa8.64□□□□□ -1.03
CPNE3-208ENST00000614678 A2ML1A8K2U0 1454 aa8.64□□□□□ -1.03
CPNE3-208ENST00000614678 NEURL4Q96JN8 1562 aa8.64□□□□□ -1.03
CPNE3-208ENST00000614678 ZC3H13Q5T200 1668 aaKnown RBP8.63□□□□□ -1.03
CPNE3-208ENST00000614678 UNC13BO14795 1591 aa8.63□□□□□ -1.03
CPNE3-208ENST00000614678 FAM135AQ9P2D6 1515 aa8.63□□□□□ -1.03
CPNE3-208ENST00000614678 CHGAP10645 457 aaKnown RBP8.63□□□□□ -1.03
CPNE3-208ENST00000614678 UBR1Q8IWV7 1749 aa8.63□□□□□ -1.03
CPNE3-208ENST00000614678 KANK1Q14678 1352 aa8.62□□□□□ -1.03
CPNE3-208ENST00000614678 LMTK2Q8IWU2 1503 aa8.61□□□□□ -1.03
CPNE3-208ENST00000614678 NOS1P29475 1434 aa8.61□□□□□ -1.03
CPNE3-208ENST00000614678 HFM1A2PYH4 1435 aa8.61□□□□□ -1.03
CPNE3-208ENST00000614678 ARHGAP31Q2M1Z3 1444 aa8.61□□□□□ -1.03
CPNE3-208ENST00000614678 SLC26A8Q96RN1 970 aa8.61□□□□□ -1.03
CPNE3-208ENST00000614678 GCC2Q8IWJ2 1684 aa8.6□□□□□ -1.03
CPNE3-208ENST00000614678 PKD2Q13563 968 aa8.6□□□□□ -1.03
CPNE3-208ENST00000614678 IQGAP3Q86VI3 1631 aa8.6□□□□□ -1.03
CPNE3-208ENST00000614678 PLA2R1Q13018 1463 aa8.6□□□□□ -1.03
CPNE3-208ENST00000614678 TET3O43151 1660 aa8.6□□□□□ -1.03
CPNE3-208ENST00000614678 TXNDC2Q86VQ3 553 aa8.6□□□□□ -1.03
CPNE3-208ENST00000614678 STAG3Q9UJ98 1225 aa8.6□□□□□ -1.03
CPNE3-208ENST00000614678 STRCP1A6NGW2 1772 aa8.59□□□□□ -1.03
CPNE3-208ENST00000614678 THEMISQ8N1K5 641 aaPredicted RBP8.59□□□□□ -1.03
CPNE3-208ENST00000614678 LTBP4Q8N2S1 1624 aa8.59□□□□□ -1.03
CPNE3-208ENST00000614678 NLRP1Q9C000 1473 aa8.59□□□□□ -1.03
CPNE3-208ENST00000614678 CERKQ8TCT0 537 aa8.59□□□□□ -1.04
CPNE3-208ENST00000614678 ANKLE2Q86XL3 938 aa8.58□□□□□ -1.04
CPNE3-208ENST00000614678 SLC4A1APQ9BWU0 796 aaKnown RBP8.58□□□□□ -1.04
CPNE3-208ENST00000614678 POLR1AO95602 1720 aaPredicted RBP8.58□□□□□ -1.04
CPNE3-208ENST00000614678 RAB3GAP2Q9H2M9 1393 aa8.58□□□□□ -1.04
CPNE3-208ENST00000614678 TMEM2Q9UHN6 1383 aa8.57□□□□□ -1.04
CPNE3-208ENST00000614678 NPHP4O75161 1426 aaPredicted RBP8.56□□□□□ -1.04
CPNE3-208ENST00000614678 TMEM131LA2VDJ0 1609 aa8.56□□□□□ -1.04
CPNE3-208ENST00000614678 MPHOSPH9Q99550 1183 aa8.56□□□□□ -1.04
CPNE3-208ENST00000614678 CLTCL1P53675 1640 aa8.56□□□□□ -1.04
CPNE3-208ENST00000614678 PTPRTO14522 1441 aa8.55□□□□□ -1.04
CPNE3-208ENST00000614678 ARHGAP23Q9P227 1491 aa8.55□□□□□ -1.04
CPNE3-208ENST00000614678 IQGAP1P46940 1657 aa8.55□□□□□ -1.04
CPNE3-208ENST00000614678 BCANQ96GW7 911 aa8.55□□□□□ -1.04
CPNE3-208ENST00000614678 SCAF11Q99590 1463 aaKnown RBP8.55□□□□□ -1.04
CPNE3-208ENST00000614678 RGL3Q3MIN7 710 aa8.54□□□□□ -1.04
CPNE3-208ENST00000614678 SPHKAPQ2M3C7 1700 aa8.54□□□□□ -1.04
CPNE3-208ENST00000614678 ADGRB3O60242 1522 aa8.54□□□□□ -1.04
CPNE3-208ENST00000614678 SETD5Q9C0A6 1442 aa8.54□□□□□ -1.04
CPNE3-208ENST00000614678 SLIT1O75093 1534 aa8.54□□□□□ -1.04
CPNE3-208ENST00000614678 ZFYVE9O95405 1425 aa8.54□□□□□ -1.04
CPNE3-208ENST00000614678 DMRT2Q9Y5R5 561 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms