RNA–Protein interactions for RNA: ENST00000613459.4

HMGXB3-206, Transcript of HMG-box containing 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene HMGXB3, Length 5,567 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-206ENST00000613459 TMX4Q9H1E5 349 aaPredicted RBP21.63■■□□□ 1.05
HMGXB3-206ENST00000613459 RAPGEF2Q9Y4G8 1499 aa21.63■■□□□ 1.05
HMGXB3-206ENST00000613459 ARID3AQ99856 593 aa21.62■■□□□ 1.05
HMGXB3-206ENST00000613459 CENPQQ7L2Z9 268 aaPredicted RBP21.61■■□□□ 1.05
HMGXB3-206ENST00000613459 NGEFQ8N5V2 710 aa21.61■■□□□ 1.05
HMGXB3-206ENST00000613459 HSP90B1P14625 803 aaKnown RBP21.61■■□□□ 1.05
HMGXB3-206ENST00000613459 TRIM6-TRIM34B2RNG4 842 aa21.61■■□□□ 1.05
HMGXB3-206ENST00000613459 L3MBTL2Q969R5 705 aa21.6■■□□□ 1.05
HMGXB3-206ENST00000613459 PAK3O75914 559 aaPredicted RBP21.59■■□□□ 1.05
HMGXB3-206ENST00000613459 KIF16BQ96L93 1317 aa21.59■■□□□ 1.05
HMGXB3-206ENST00000613459 SKOR2Q2VWA4 1001 aaPredicted RBP21.59■■□□□ 1.05
HMGXB3-206ENST00000613459 HSP90AA2PQ14568 343 aaPredicted RBP21.59■■□□□ 1.05
HMGXB3-206ENST00000613459 TAF7LQ5H9L4 462 aa21.59■■□□□ 1.05
HMGXB3-206ENST00000613459 TOP2AP11388 1531 aaKnown RBP21.58■■□□□ 1.05
HMGXB3-206ENST00000613459 ATP6V1DQ9Y5K8 247 aa21.57■■□□□ 1.04
HMGXB3-206ENST00000613459 TDRD9Q8NDG6 1382 aaKnown RBP21.57■■□□□ 1.04
HMGXB3-206ENST00000613459 EID1Q9Y6B2 187 aa21.57■■□□□ 1.04
HMGXB3-206ENST00000613459 KIF3BO15066 747 aa21.54■■□□□ 1.04
HMGXB3-206ENST00000613459 TPM3P06753 285 aa21.53■■□□□ 1.04
HMGXB3-206ENST00000613459 E9PSI1 815 aa21.53■■□□□ 1.04
HMGXB3-206ENST00000613459 FAM161AQ3B820 660 aa21.52■■□□□ 1.04
HMGXB3-206ENST00000613459 CGNL1Q0VF96 1302 aa21.52■■□□□ 1.03
HMGXB3-206ENST00000613459 CCDC144AA2RUR9 1427 aa21.51■■□□□ 1.03
HMGXB3-206ENST00000613459 A0A0U1RQG5 324 aaPredicted RBP21.5■■□□□ 1.03
HMGXB3-206ENST00000613459 WIZO95785 1651 aa21.5■■□□□ 1.03
HMGXB3-206ENST00000613459 SETQ01105 290 aaPredicted RBP21.5■■□□□ 1.03
HMGXB3-206ENST00000613459 VSIG10Q8N0Z9 540 aa21.49■■□□□ 1.03
HMGXB3-206ENST00000613459 CHMP3Q9Y3E7 222 aa21.49■■□□□ 1.03
HMGXB3-206ENST00000613459 GSE1Q14687 1217 aa21.49■■□□□ 1.03
HMGXB3-206ENST00000613459 LRRFIP1Q32MZ4 808 aaKnown RBP21.49■■□□□ 1.03
HMGXB3-206ENST00000613459 AMPHP49418 695 aa21.49■■□□□ 1.03
HMGXB3-206ENST00000613459 ANO8Q9HCE9 1232 aaPredicted RBP21.49■■□□□ 1.03
HMGXB3-206ENST00000613459 RASSF8Q8NHQ8 419 aa21.48■■□□□ 1.03
HMGXB3-206ENST00000613459 ZBED9Q6R2W3 1325 aa21.48■■□□□ 1.03
HMGXB3-206ENST00000613459 SLC4A10Q6U841 1118 aa21.47■■□□□ 1.03
HMGXB3-206ENST00000613459 ZKSCAN2Q63HK3 967 aa21.47■■□□□ 1.03
HMGXB3-206ENST00000613459 NGDNQ8NEJ9 315 aaKnown RBP21.47■■□□□ 1.03
HMGXB3-206ENST00000613459 TRHP20396 242 aaPredicted RBP21.46■■□□□ 1.03
HMGXB3-206ENST00000613459 SF3A1Q15459 793 aaKnown RBP21.46■■□□□ 1.03
HMGXB3-206ENST00000613459 WASHC2CQ9Y4E1 1318 aa21.46■■□□□ 1.03
HMGXB3-206ENST00000613459 ZNF330Q9Y3S2 320 aaPredicted RBP21.45■■□□□ 1.03
HMGXB3-206ENST00000613459 CCDC146Q8IYE0 955 aa21.45■■□□□ 1.02
HMGXB3-206ENST00000613459 FHOD3Q2V2M9 1422 aa21.45■■□□□ 1.02
HMGXB3-206ENST00000613459 CLUAP1Q96AJ1 413 aa21.45■■□□□ 1.02
HMGXB3-206ENST00000613459 FOXD4L1Q9NU39 408 aa21.44■■□□□ 1.02
HMGXB3-206ENST00000613459 CEP89Q96ST8 783 aa21.43■■□□□ 1.02
HMGXB3-206ENST00000613459 AAMPQ13685 434 aa21.42■■□□□ 1.02
HMGXB3-206ENST00000613459 HNRNPMP52272 730 aaKnown RBP eCLIP21.42■■□□□ 1.02
HMGXB3-206ENST00000613459 EVC2Q86UK5 1308 aa21.42■■□□□ 1.02
HMGXB3-206ENST00000613459 ROCK1Q13464 1354 aa21.42■■□□□ 1.02
HMGXB3-206ENST00000613459 RRP1P56182 461 aaKnown RBP21.42■■□□□ 1.02
HMGXB3-206ENST00000613459 RUFY2Q8WXA3 655 aa21.42■■□□□ 1.02
HMGXB3-206ENST00000613459 PDE4AP27815 886 aa21.41■■□□□ 1.02
HMGXB3-206ENST00000613459 H3BQV1 296 aa21.41■■□□□ 1.02
HMGXB3-206ENST00000613459 IFFO2Q5TF58 517 aa21.41■■□□□ 1.02
HMGXB3-206ENST00000613459 DHX57Q6P158 1386 aaKnown RBP21.41■■□□□ 1.02
HMGXB3-206ENST00000613459 CADPSQ9ULU8 1353 aa21.4■■□□□ 1.02
HMGXB3-206ENST00000613459 TSR1Q2NL82 804 aaKnown RBP21.4■■□□□ 1.02
HMGXB3-206ENST00000613459 STAC3Q96MF2 364 aa21.4■■□□□ 1.02
HMGXB3-206ENST00000613459 GPS2Q13227 327 aa21.4■■□□□ 1.02
HMGXB3-206ENST00000613459 VGFO15240 615 aaPredicted RBP21.39■■□□□ 1.02
HMGXB3-206ENST00000613459 REC8O95072 547 aa21.39■■□□□ 1.02
HMGXB3-206ENST00000613459 TPM1P09493 284 aa21.39■■□□□ 1.02
HMGXB3-206ENST00000613459 TPM2P07951 284 aa21.39■■□□□ 1.01
HMGXB3-206ENST00000613459 GOLGA6L19H0YKK7 550 aa21.39■■□□□ 1.01
HMGXB3-206ENST00000613459 PANK3Q9H999 370 aa21.39■■□□□ 1.01
HMGXB3-206ENST00000613459 FAM184AQ8NB25 1140 aa21.38■■□□□ 1.01
HMGXB3-206ENST00000613459 DDX49Q9Y6V7 483 aaKnown RBP21.38■■□□□ 1.01
HMGXB3-206ENST00000613459 DDX19BQ9UMR2 479 aa21.38■■□□□ 1.01
HMGXB3-206ENST00000613459 CPLX2Q6PUV4 134 aaKnown RBP21.38■■□□□ 1.01
HMGXB3-206ENST00000613459 PRKRIP1Q9H875 184 aaPredicted RBP21.37■■□□□ 1.01
HMGXB3-206ENST00000613459 NOL8Q76FK4 1167 aaKnown RBP21.37■■□□□ 1.01
HMGXB3-206ENST00000613459 COG3Q96JB2 828 aa21.37■■□□□ 1.01
HMGXB3-206ENST00000613459 CCDC70Q6NSX1 233 aa21.36■■□□□ 1.01
HMGXB3-206ENST00000613459 API5Q9BZZ5 524 aaKnown RBP21.36■■□□□ 1.01
HMGXB3-206ENST00000613459 ST20-MTHFSA0A0A6YYL1 179 aa21.35■■□□□ 1.01
HMGXB3-206ENST00000613459 G3V3G9 751 aa21.34■■□□□ 1.01
HMGXB3-206ENST00000613459 AKAP17AQ02040 695 aaKnown RBP21.34■■□□□ 1.01
HMGXB3-206ENST00000613459 DCAF8Q5TAQ9 597 aa21.34■■□□□ 1.01
HMGXB3-206ENST00000613459 MARCH6O60337 910 aa21.34■■□□□ 1.01
HMGXB3-206ENST00000613459 TPD52L1Q16890 204 aaPredicted RBP21.34■■□□□ 1.01
HMGXB3-206ENST00000613459 USP47Q96K76 1375 aa21.34■■□□□ 1.01
HMGXB3-206ENST00000613459 ANKRD45Q5TZF3 282 aa21.34■■□□□ 1.01
HMGXB3-206ENST00000613459 SYNE3Q6ZMZ3 975 aa21.34■■□□□ 1.01
HMGXB3-206ENST00000613459 TOMM22Q9NS69 142 aa21.34■■□□□ 1.01
HMGXB3-206ENST00000613459 BECN2A8MW95 431 aa21.33■■□□□ 1.01
HMGXB3-206ENST00000613459 C1orf141Q5JVX7 400 aa21.33■■□□□ 1
HMGXB3-206ENST00000613459 DIAPH3Q9NSV4 1193 aa21.32■■□□□ 1
HMGXB3-206ENST00000613459 ZKSCAN1P17029 563 aaPredicted RBP21.31■■□□□ 1
HMGXB3-206ENST00000613459 TRAK1Q9UPV9 953 aa21.31■■□□□ 1
HMGXB3-206ENST00000613459 NEXNQ0ZGT2 675 aa21.31■■□□□ 1
HMGXB3-206ENST00000613459 NCBP3Q53F19 620 aaKnown RBP21.31■■□□□ 1
HMGXB3-206ENST00000613459 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.31■■□□□ 1
HMGXB3-206ENST00000613459 RILPL2Q969X0 211 aa21.3■■□□□ 1
HMGXB3-206ENST00000613459 FRAT2O75474 233 aaPredicted RBP21.3■■□□□ 1
HMGXB3-206ENST00000613459 CREBRFQ8IUR6 639 aa21.3■■□□□ 1
HMGXB3-206ENST00000613459 CCDC47Q96A33 483 aaKnown RBP21.29■■□□□ 1
HMGXB3-206ENST00000613459 ZNF771Q7L3S4 317 aaPredicted RBP21.29■■□□□ 1
HMGXB3-206ENST00000613459 FOXD4L5Q5VV16 416 aaPredicted RBP21.28■■□□□ 1
HMGXB3-206ENST00000613459 FOXD4L4Q8WXT5 416 aaPredicted RBP21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms