RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 HDGFP51858 240 aaKnown RBP6.13□□□□□ -1.43
VPS13D-213ENST00000613099 CHMP5Q9NZZ3 219 aa6.13□□□□□ -1.43
VPS13D-213ENST00000613099 UQCRHLA0A096LP55 91 aa6.12□□□□□ -1.43
VPS13D-213ENST00000613099 UQCRHP07919 91 aa6.12□□□□□ -1.43
VPS13D-213ENST00000613099 CGNQ9P2M7 1197 aaKnown RBP6.12□□□□□ -1.43
VPS13D-213ENST00000613099 AKNAQ7Z591 1439 aa6.12□□□□□ -1.43
VPS13D-213ENST00000613099 KIF27Q86VH2 1401 aa6.12□□□□□ -1.43
VPS13D-213ENST00000613099 CEP164Q9UPV0 1460 aa6.12□□□□□ -1.43
VPS13D-213ENST00000613099 FAM107BQ9H098 131 aa6.12□□□□□ -1.43
VPS13D-213ENST00000613099 CAVIN1Q6NZI2 390 aaKnown RBP6.11□□□□□ -1.43
VPS13D-213ENST00000613099 NUDCQ9Y266 331 aa6.11□□□□□ -1.43
VPS13D-213ENST00000613099 PPP4R3BQ5MIZ7 849 aa6.11□□□□□ -1.43
VPS13D-213ENST00000613099 ZNF622Q969S3 477 aaKnown RBP eCLIP6.11□□□□□ -1.438e-7■□□□□ 10.6
VPS13D-213ENST00000613099 TERF1P54274 439 aa6.11□□□□□ -1.43
VPS13D-213ENST00000613099 CENPQQ7L2Z9 268 aaPredicted RBP6.11□□□□□ -1.43
VPS13D-213ENST00000613099 RWDD1Q9H446 243 aaPredicted RBP6.11□□□□□ -1.43
VPS13D-213ENST00000613099 FMN1Q68DA7 1419 aa6.11□□□□□ -1.43
VPS13D-213ENST00000613099 TRAK2O60296 914 aa6.11□□□□□ -1.43
VPS13D-213ENST00000613099 LMOD3Q0VAK6 560 aa6.11□□□□□ -1.43
VPS13D-213ENST00000613099 CCDC94Q9BW85 323 aaPredicted RBP6.11□□□□□ -1.43
VPS13D-213ENST00000613099 PAIP2Q9BPZ3 127 aaKnown RBP6.1□□□□□ -1.43
VPS13D-213ENST00000613099 SASS6Q6UVJ0 657 aa6.1□□□□□ -1.43
VPS13D-213ENST00000613099 FAM193AP78312 1265 aa6.1□□□□□ -1.43
VPS13D-213ENST00000613099 SPRYD3Q8NCJ5 442 aa6.1□□□□□ -1.43
VPS13D-213ENST00000613099 HDAC5Q9UQL6 1122 aa6.1□□□□□ -1.43
VPS13D-213ENST00000613099 PLCD3Q8N3E9 789 aa6.09□□□□□ -1.43
VPS13D-213ENST00000613099 MAPK8IP3Q9UPT6 1336 aa6.09□□□□□ -1.43
VPS13D-213ENST00000613099 TPRNQ4KMQ1 711 aa6.09□□□□□ -1.43
VPS13D-213ENST00000613099 PEG3Q9GZU2 1588 aa6.09□□□□□ -1.43
VPS13D-213ENST00000613099 FRAT2O75474 233 aaPredicted RBP6.09□□□□□ -1.43
VPS13D-213ENST00000613099 WASHC2AQ641Q2 1341 aa6.09□□□□□ -1.43
VPS13D-213ENST00000613099 DDX49Q9Y6V7 483 aaKnown RBP6.09□□□□□ -1.43
VPS13D-213ENST00000613099 TPM4P67936 248 aa6.09□□□□□ -1.43
VPS13D-213ENST00000613099 WRNQ14191 1432 aaPredicted RBP eCLIP6.09□□□□□ -1.43
VPS13D-213ENST00000613099 KIF16BQ96L93 1317 aa6.09□□□□□ -1.43
VPS13D-213ENST00000613099 LEKR1Q6ZMV7 388 aa6.09□□□□□ -1.44
VPS13D-213ENST00000613099 HSP90B2PQ58FF3 399 aa6.09□□□□□ -1.44
VPS13D-213ENST00000613099 OS9Q13438 667 aaPredicted RBP6.09□□□□□ -1.44
VPS13D-213ENST00000613099 AEBP1Q8IUX7 1158 aa6.08□□□□□ -1.44
VPS13D-213ENST00000613099 ACBD3Q9H3P7 528 aa6.08□□□□□ -1.44
VPS13D-213ENST00000613099 CLSTN1O94985 981 aa6.08□□□□□ -1.44
VPS13D-213ENST00000613099 NBPF1Q3BBV0 1214 aa6.08□□□□□ -1.44
VPS13D-213ENST00000613099 CENPJQ9HC77 1338 aaPredicted RBP6.08□□□□□ -1.44
VPS13D-213ENST00000613099 CHMP4CQ96CF2 233 aa6.08□□□□□ -1.44
VPS13D-213ENST00000613099 HS1BP3Q53T59 392 aa6.08□□□□□ -1.44
VPS13D-213ENST00000613099 ZBED9Q6R2W3 1325 aa6.08□□□□□ -1.44
VPS13D-213ENST00000613099 ZNF526Q8TF50 670 aaPredicted RBP6.08□□□□□ -1.44
VPS13D-213ENST00000613099 SETSIPP0DME0 302 aa6.08□□□□□ -1.44
VPS13D-213ENST00000613099 KLHL34Q8N239 644 aa6.08□□□□□ -1.44
VPS13D-213ENST00000613099 PSMD1Q99460 953 aa6.08□□□□□ -1.44
VPS13D-213ENST00000613099 CCDC91Q7Z6B0 441 aa6.07□□□□□ -1.44
VPS13D-213ENST00000613099 WASHC2CQ9Y4E1 1318 aa6.07□□□□□ -1.44
VPS13D-213ENST00000613099 FBXO3Q9UK99 471 aa6.07□□□□□ -1.44
VPS13D-213ENST00000613099 DDX11Q96FC9 970 aa6.07□□□□□ -1.44
VPS13D-213ENST00000613099 E9PSI1 815 aa6.07□□□□□ -1.44
VPS13D-213ENST00000613099 SLC4A3P48751 1232 aa6.07□□□□□ -1.44
VPS13D-213ENST00000613099 SLC26A8Q96RN1 970 aa6.07□□□□□ -1.44
VPS13D-213ENST00000613099 GRPEL1Q9HAV7 217 aa6.07□□□□□ -1.44
VPS13D-213ENST00000613099 GIMAP7Q8NHV1 300 aa6.07□□□□□ -1.44
VPS13D-213ENST00000613099 UTP14CQ5TAP6 766 aaKnown RBP6.07□□□□□ -1.44
VPS13D-213ENST00000613099 MAPK8IP2Q13387 824 aaPredicted RBP6.06□□□□□ -1.44
VPS13D-213ENST00000613099 TOP2AP11388 1531 aaKnown RBP6.06□□□□□ -1.44
VPS13D-213ENST00000613099 PHLDB1Q86UU1 1377 aa6.06□□□□□ -1.44
VPS13D-213ENST00000613099 LAMC3Q9Y6N6 1575 aa6.06□□□□□ -1.44
VPS13D-213ENST00000613099 PRDM10Q9NQV6 1147 aa6.06□□□□□ -1.44
VPS13D-213ENST00000613099 KNSTRNQ9Y448 316 aa6.06□□□□□ -1.44
VPS13D-213ENST00000613099 MCCP23508 829 aa6.06□□□□□ -1.44
VPS13D-213ENST00000613099 CDR1P51861 262 aa6.06□□□□□ -1.44
VPS13D-213ENST00000613099 KTN1Q86UP2 1357 aaKnown RBP6.06□□□□□ -1.44
VPS13D-213ENST00000613099 TPM1P09493 284 aa6.06□□□□□ -1.44
VPS13D-213ENST00000613099 GPATCH11Q8N954 259 aa6.06□□□□□ -1.44
VPS13D-213ENST00000613099 WIZO95785 1651 aa6.06□□□□□ -1.44
VPS13D-213ENST00000613099 RNF20Q5VTR2 975 aa6.06□□□□□ -1.44
VPS13D-213ENST00000613099 DHX8Q14562 1220 aaKnown RBP6.06□□□□□ -1.44
VPS13D-213ENST00000613099 BACH2Q9BYV9 841 aa6.06□□□□□ -1.44
VPS13D-213ENST00000613099 TDO2P48775 406 aa6.05□□□□□ -1.44
VPS13D-213ENST00000613099 PRIMPOLQ96LW4 560 aa6.05□□□□□ -1.44
VPS13D-213ENST00000613099 TEX2Q8IWB9 1127 aa6.05□□□□□ -1.44
VPS13D-213ENST00000613099 BANK1Q8NDB2 785 aa6.05□□□□□ -1.44
VPS13D-213ENST00000613099 TTLL5Q6EMB2 1281 aa6.05□□□□□ -1.44
VPS13D-213ENST00000613099 GOLGA6L10A6NI86 522 aa6.05□□□□□ -1.44
VPS13D-213ENST00000613099 CBX1P83916 185 aa6.05□□□□□ -1.44
VPS13D-213ENST00000613099 ATP6V1DQ9Y5K8 247 aa6.05□□□□□ -1.44
VPS13D-213ENST00000613099 PMFBP1Q8TBY8 1022 aa6.05□□□□□ -1.44
VPS13D-213ENST00000613099 EIF3DO15371 548 aaKnown RBP eCLIP6.05□□□□□ -1.44
VPS13D-213ENST00000613099 OFD1O75665 1012 aa6.05□□□□□ -1.44
VPS13D-213ENST00000613099 MYCBPQ99417 103 aaPredicted RBP6.05□□□□□ -1.44
VPS13D-213ENST00000613099 FEZ1Q99689 392 aa6.05□□□□□ -1.44
VPS13D-213ENST00000613099 CCDC18Q5T9S5 1454 aa6.05□□□□□ -1.44
VPS13D-213ENST00000613099 CARMIL2Q6F5E8 1435 aa6.04□□□□□ -1.44
VPS13D-213ENST00000613099 CCDC70Q6NSX1 233 aa6.04□□□□□ -1.44
VPS13D-213ENST00000613099 NUCB2P80303 420 aa6.04□□□□□ -1.44
VPS13D-213ENST00000613099 CCDC191Q8NCU4 936 aa6.04□□□□□ -1.44
VPS13D-213ENST00000613099 RALBP1Q15311 655 aa6.04□□□□□ -1.44
VPS13D-213ENST00000613099 ERCC4Q92889 916 aaPredicted RBP6.04□□□□□ -1.44
VPS13D-213ENST00000613099 H0YHG0 523 aa6.04□□□□□ -1.44
VPS13D-213ENST00000613099 DYDC1Q8WWB3 177 aa6.04□□□□□ -1.44
VPS13D-213ENST00000613099 NOC3LQ8WTT2 800 aaKnown RBP6.04□□□□□ -1.44
VPS13D-213ENST00000613099 KCNH8Q96L42 1107 aa6.03□□□□□ -1.44
VPS13D-213ENST00000613099 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms