RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 ZNF142P52746 1687 aaPredicted RBP24.91■■□□□ 1.58
SHKBP1-228ENST00000602239 PKD2Q13563 968 aa24.9■■□□□ 1.58
SHKBP1-228ENST00000602239 MAP3K1Q13233 1512 aa24.88■■□□□ 1.57
SHKBP1-228ENST00000602239 PLA2R1Q13018 1463 aa24.88■■□□□ 1.57
SHKBP1-228ENST00000602239 ZNF335Q9H4Z2 1342 aaPredicted RBP24.87■■□□□ 1.57
SHKBP1-228ENST00000602239 A2ML1A8K2U0 1454 aa24.86■■□□□ 1.57
SHKBP1-228ENST00000602239 TCOF1Q13428 1488 aaKnown RBP24.86■■□□□ 1.57
SHKBP1-228ENST00000602239 TNRQ92752 1358 aa24.85■■□□□ 1.57
SHKBP1-228ENST00000602239 KDM5DQ9BY66 1539 aa24.85■■□□□ 1.57
SHKBP1-228ENST00000602239 MYOM3Q5VTT5 1437 aa24.84■■□□□ 1.57
SHKBP1-228ENST00000602239 PZPP20742 1482 aa24.83■■□□□ 1.57
SHKBP1-228ENST00000602239 DNMT1P26358 1616 aaKnown RBP24.83■■□□□ 1.57
SHKBP1-228ENST00000602239 MIA2Q96PC5 1412 aa24.82■■□□□ 1.56
SHKBP1-228ENST00000602239 MAST1Q9Y2H9 1570 aa24.8■■□□□ 1.56
SHKBP1-228ENST00000602239 FAM135AQ9P2D6 1515 aa24.78■■□□□ 1.56
SHKBP1-228ENST00000602239 IQSEC2Q5JU85 1478 aa24.77■■□□□ 1.56
SHKBP1-228ENST00000602239 APLP2Q06481 763 aa24.74■■□□□ 1.55
SHKBP1-228ENST00000602239 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.74■■□□□ 1.55
SHKBP1-228ENST00000602239 RNF17Q9BXT8 1623 aaKnown RBP24.73■■□□□ 1.55
SHKBP1-228ENST00000602239 THEMISQ8N1K5 641 aaPredicted RBP24.73■■□□□ 1.55
SHKBP1-228ENST00000602239 ABCC3O15438 1527 aa24.72■■□□□ 1.55
SHKBP1-228ENST00000602239 ANKLE2Q86XL3 938 aa24.71■■□□□ 1.55
SHKBP1-228ENST00000602239 ABCC5O15440 1437 aa24.7■■□□□ 1.55
SHKBP1-228ENST00000602239 RRP7BPQ9NSQ0 103 aa24.7■■□□□ 1.54
SHKBP1-228ENST00000602239 NLRP1Q9C000 1473 aa24.7■■□□□ 1.54
SHKBP1-228ENST00000602239 NEURL4Q96JN8 1562 aa24.69■■□□□ 1.54
SHKBP1-228ENST00000602239 UBAP1LF5GYI3 381 aa24.69■■□□□ 1.54
SHKBP1-228ENST00000602239 MROH1Q8NDA8 1641 aa24.68■■□□□ 1.54
SHKBP1-228ENST00000602239 EIF2AK4Q9P2K8 1649 aaKnown RBP24.68■■□□□ 1.54
SHKBP1-228ENST00000602239 UGGT1Q9NYU2 1555 aa24.67■■□□□ 1.54
SHKBP1-228ENST00000602239 DUOX2Q9NRD8 1548 aa24.67■■□□□ 1.54
SHKBP1-228ENST00000602239 PTPN23Q9H3S7 1636 aa24.66■■□□□ 1.54
SHKBP1-228ENST00000602239 KIF15Q9NS87 1388 aa24.66■■□□□ 1.54
SHKBP1-228ENST00000602239 DISP3Q9P2K9 1392 aa24.66■■□□□ 1.54
SHKBP1-228ENST00000602239 POLR1AO95602 1720 aaPredicted RBP24.65■■□□□ 1.54
SHKBP1-228ENST00000602239 ERVK-7P63135 1459 aa24.64■■□□□ 1.53
SHKBP1-228ENST00000602239 SPATA31D1Q6ZQQ2 1576 aa24.63■■□□□ 1.53
SHKBP1-228ENST00000602239 CFAP65Q6ZU64 1925 aaKnown RBP24.63■■□□□ 1.53
SHKBP1-228ENST00000602239 ZC3H13Q5T200 1668 aaKnown RBP24.62■■□□□ 1.53
SHKBP1-228ENST00000602239 FGD6Q6ZV73 1430 aa24.62■■□□□ 1.53
SHKBP1-228ENST00000602239 CHIC2Q9UKJ5 165 aa24.62■■□□□ 1.53
SHKBP1-228ENST00000602239 DAPK1P53355 1430 aa24.61■■□□□ 1.53
SHKBP1-228ENST00000602239 CEP152O94986 1710 aa24.61■■□□□ 1.53
SHKBP1-228ENST00000602239 ILDR2Q71H61 639 aa24.61■■□□□ 1.53
SHKBP1-228ENST00000602239 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.61■■□□□ 1.53
SHKBP1-228ENST00000602239 SHANK2Q9UPX8 1470 aa24.6■■□□□ 1.53
SHKBP1-228ENST00000602239 MED14O60244 1454 aa24.59■■□□□ 1.53
SHKBP1-228ENST00000602239 NPHP4O75161 1426 aaPredicted RBP24.59■■□□□ 1.53
SHKBP1-228ENST00000602239 CROCC2H7BZ55 1655 aa24.59■■□□□ 1.53
SHKBP1-228ENST00000602239 ERBINQ96RT1 1412 aa24.57■■□□□ 1.52
SHKBP1-228ENST00000602239 DEPDC5O75140 1603 aa24.56■■□□□ 1.52
SHKBP1-228ENST00000602239 VWDEQ8N2E2 1590 aa24.55■■□□□ 1.52
SHKBP1-228ENST00000602239 CPS1P31327 1500 aa24.54■■□□□ 1.52
SHKBP1-228ENST00000602239 PRDM15P57071 1507 aaPredicted RBP24.54■■□□□ 1.52
SHKBP1-228ENST00000602239 ARHGAP31Q2M1Z3 1444 aa24.53■■□□□ 1.52
SHKBP1-228ENST00000602239 LTKP29376 864 aa24.52■■□□□ 1.52
SHKBP1-228ENST00000602239 PIP4K2BP78356 416 aa24.52■■□□□ 1.52
SHKBP1-228ENST00000602239 ANKRD30AQ9BXX3 1397 aa24.52■■□□□ 1.52
SHKBP1-228ENST00000602239 SCAF1Q9H7N4 1312 aaKnown RBP24.5■■□□□ 1.51
SHKBP1-228ENST00000602239 IQGAP1P46940 1657 aa24.5■■□□□ 1.51
SHKBP1-228ENST00000602239 UBR1Q8IWV7 1749 aa24.49■■□□□ 1.51
SHKBP1-228ENST00000602239 TOM1O60784 492 aa24.49■■□□□ 1.51
SHKBP1-228ENST00000602239 FAM50AQ14320 339 aaKnown RBP24.49■■□□□ 1.51
SHKBP1-228ENST00000602239 KANK1Q14678 1352 aa24.47■■□□□ 1.51
SHKBP1-228ENST00000602239 TXNDC2Q86VQ3 553 aa24.47■■□□□ 1.51
SHKBP1-228ENST00000602239 HSPA1LP34931 641 aa24.45■■□□□ 1.5
SHKBP1-228ENST00000602239 STRCP1A6NGW2 1772 aa24.44■■□□□ 1.5
SHKBP1-228ENST00000602239 SCAF11Q99590 1463 aaKnown RBP24.44■■□□□ 1.5
SHKBP1-228ENST00000602239 ARHGAP23Q9P227 1491 aa24.44■■□□□ 1.5
SHKBP1-228ENST00000602239 IDI1Q13907 227 aa24.43■■□□□ 1.5
SHKBP1-228ENST00000602239 SLIT1O75093 1534 aa24.41■■□□□ 1.5
SHKBP1-228ENST00000602239 LMTK2Q8IWU2 1503 aa24.4■■□□□ 1.5
SHKBP1-228ENST00000602239 LRRC7Q96NW7 1537 aa24.4■■□□□ 1.5
SHKBP1-228ENST00000602239 ADGRL2O95490 1459 aa24.4■■□□□ 1.5
SHKBP1-228ENST00000602239 PIK3C2BO00750 1634 aa24.4■■□□□ 1.5
SHKBP1-228ENST00000602239 ALKQ9UM73 1620 aa24.4■■□□□ 1.5
SHKBP1-228ENST00000602239 STAG3Q9UJ98 1225 aa24.4■■□□□ 1.5
SHKBP1-228ENST00000602239 EID1Q9Y6B2 187 aa24.4■■□□□ 1.5
SHKBP1-228ENST00000602239 TMEM2Q9UHN6 1383 aa24.39■■□□□ 1.49
SHKBP1-228ENST00000602239 SOCS7O14512 581 aa24.37■■□□□ 1.49
SHKBP1-228ENST00000602239 NOS1P29475 1434 aa24.35■■□□□ 1.49
SHKBP1-228ENST00000602239 ANKRD50Q9ULJ7 1429 aa24.35■■□□□ 1.49
SHKBP1-228ENST00000602239 SYNMO15061 1565 aa24.34■■□□□ 1.49
SHKBP1-228ENST00000602239 EFCAB6Q5THR3 1501 aa24.32■■□□□ 1.48
SHKBP1-228ENST00000602239 SENP3Q9H4L4 574 aaPredicted RBP24.31■■□□□ 1.48
SHKBP1-228ENST00000602239 PPARGC1BQ86YN6 1023 aaKnown RBP24.29■■□□□ 1.48
SHKBP1-228ENST00000602239 SLC26A8Q96RN1 970 aa24.29■■□□□ 1.48
SHKBP1-228ENST00000602239 SLC52A1Q9NWF4 448 aa24.29■■□□□ 1.48
SHKBP1-228ENST00000602239 KDM5AP29375 1690 aaKnown RBP24.27■■□□□ 1.48
SHKBP1-228ENST00000602239 TET3O43151 1660 aa24.24■■□□□ 1.47
SHKBP1-228ENST00000602239 XIRP1Q702N8 1843 aaKnown RBP24.23■■□□□ 1.47
SHKBP1-228ENST00000602239 ADGRB3O60242 1522 aa24.22■■□□□ 1.47
SHKBP1-228ENST00000602239 RPRD2Q5VT52 1461 aaKnown RBP24.22■■□□□ 1.47
SHKBP1-228ENST00000602239 KCNA6P17658 529 aa24.22■■□□□ 1.47
SHKBP1-228ENST00000602239 RBM33Q96EV2 1170 aaKnown RBP24.22■■□□□ 1.47
SHKBP1-228ENST00000602239 MED1Q15648 1581 aaPredicted RBP24.21■■□□□ 1.47
SHKBP1-228ENST00000602239 ITGAEP38570 1179 aa24.21■■□□□ 1.47
SHKBP1-228ENST00000602239 BCANQ96GW7 911 aa24.2■■□□□ 1.46
SHKBP1-228ENST00000602239 ROCK1Q13464 1354 aa24.19■■□□□ 1.46
SHKBP1-228ENST00000602239 TMEM94Q12767 1356 aa24.18■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms