RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 ZMYM3Q14202 1370 aa29.54■■■□□ 2.32
UPF1-212ENST00000601689 WASHC2CQ9Y4E1 1318 aa29.53■■■□□ 2.32
UPF1-212ENST00000601689 FAM135AQ9P2D6 1515 aa29.53■■■□□ 2.32
UPF1-212ENST00000601689 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.52■■■□□ 2.32
UPF1-212ENST00000601689 ERBINQ96RT1 1412 aa29.51■■■□□ 2.31
UPF1-212ENST00000601689 PREX1Q8TCU6 1659 aa29.47■■■□□ 2.31
UPF1-212ENST00000601689 NCOA1Q15788 1441 aa29.47■■■□□ 2.31
UPF1-212ENST00000601689 KDM5DQ9BY66 1539 aa29.47■■■□□ 2.31
UPF1-212ENST00000601689 ADGRL2O95490 1459 aa29.46■■■□□ 2.31
UPF1-212ENST00000601689 UHRF1BP1Q6BDS2 1440 aa29.45■■■□□ 2.31
UPF1-212ENST00000601689 RNF17Q9BXT8 1623 aaKnown RBP29.45■■■□□ 2.3
UPF1-212ENST00000601689 ITGAEP38570 1179 aa29.44■■■□□ 2.3
UPF1-212ENST00000601689 NPATQ14207 1427 aa29.44■■■□□ 2.3
UPF1-212ENST00000601689 LMTK3Q96Q04 1460 aa29.42■■■□□ 2.3
UPF1-212ENST00000601689 KANK1Q14678 1352 aa29.41■■■□□ 2.3
UPF1-212ENST00000601689 ZC3H13Q5T200 1668 aaKnown RBP29.4■■■□□ 2.3
UPF1-212ENST00000601689 RRBP1Q9P2E9 1410 aaKnown RBP29.39■■■□□ 2.3
UPF1-212ENST00000601689 ROCK1Q13464 1354 aa29.38■■■□□ 2.29
UPF1-212ENST00000601689 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.37■■■□□ 2.293e-6■■□□□ 11.5
UPF1-212ENST00000601689 ANKRD50Q9ULJ7 1429 aa29.35■■■□□ 2.29
UPF1-212ENST00000601689 PTPRKQ15262 1439 aa29.33■■■□□ 2.29
UPF1-212ENST00000601689 PZPP20742 1482 aa29.32■■■□□ 2.28
UPF1-212ENST00000601689 HSPA2P54652 639 aa29.32■■■□□ 2.28
UPF1-212ENST00000601689 ABCC3O15438 1527 aa29.3■■■□□ 2.28
UPF1-212ENST00000601689 PRDM15P57071 1507 aaPredicted RBP29.3■■■□□ 2.28
UPF1-212ENST00000601689 DEPDC5O75140 1603 aa29.28■■■□□ 2.28
UPF1-212ENST00000601689 CEP152O94986 1710 aa29.28■■■□□ 2.28
UPF1-212ENST00000601689 MROH1Q8NDA8 1641 aa29.27■■■□□ 2.28
UPF1-212ENST00000601689 TNRQ92752 1358 aa29.25■■■□□ 2.27
UPF1-212ENST00000601689 CAMSAP1Q5T5Y3 1602 aa29.23■■■□□ 2.27
UPF1-212ENST00000601689 FBXO31Q5XUX0 539 aaPredicted RBP29.23■■■□□ 2.27
UPF1-212ENST00000601689 CFAP65Q6ZU64 1925 aaKnown RBP29.22■■■□□ 2.27
UPF1-212ENST00000601689 DMRT2Q9Y5R5 561 aa29.22■■■□□ 2.27
UPF1-212ENST00000601689 MYO3AQ8NEV4 1616 aa29.22■■■□□ 2.27
UPF1-212ENST00000601689 ARHGAP31Q2M1Z3 1444 aa29.18■■■□□ 2.26
UPF1-212ENST00000601689 CEP170BQ9Y4F5 1589 aaPredicted RBP29.18■■■□□ 2.26
UPF1-212ENST00000601689 ZNF142P52746 1687 aaPredicted RBP29.17■■■□□ 2.26
UPF1-212ENST00000601689 NLRP1Q9C000 1473 aa29.16■■■□□ 2.26
UPF1-212ENST00000601689 LMTK2Q8IWU2 1503 aa29.15■■■□□ 2.26
UPF1-212ENST00000601689 A2ML1A8K2U0 1454 aa29.15■■■□□ 2.26
UPF1-212ENST00000601689 SPATA31D1Q6ZQQ2 1576 aa29.13■■■□□ 2.25
UPF1-212ENST00000601689 VWDEQ8N2E2 1590 aa29.13■■■□□ 2.25
UPF1-212ENST00000601689 ERVK-7P63135 1459 aa29.12■■■□□ 2.25
UPF1-212ENST00000601689 UNC13BO14795 1591 aa29.11■■■□□ 2.25
UPF1-212ENST00000601689 THEMISQ8N1K5 641 aaPredicted RBP29.1■■■□□ 2.25
UPF1-212ENST00000601689 NUP155O75694 1391 aa29.08■■■□□ 2.25
UPF1-212ENST00000601689 PKD2Q13563 968 aa29.07■■■□□ 2.24
UPF1-212ENST00000601689 TET3O43151 1660 aa29.05■■■□□ 2.24
UPF1-212ENST00000601689 UGGT1Q9NYU2 1555 aa29.05■■■□□ 2.24
UPF1-212ENST00000601689 EFCAB6Q5THR3 1501 aa29.05■■■□□ 2.24
UPF1-212ENST00000601689 PLA2R1Q13018 1463 aa29.05■■■□□ 2.24
UPF1-212ENST00000601689 RPRD2Q5VT52 1461 aaKnown RBP29.05■■■□□ 2.24
UPF1-212ENST00000601689 STRCQ7RTU9 1775 aa29.05■■■□□ 2.24
UPF1-212ENST00000601689 GCC2Q8IWJ2 1684 aa29.05■■■□□ 2.24
UPF1-212ENST00000601689 STAG3Q9UJ98 1225 aa29.04■■■□□ 2.24
UPF1-212ENST00000601689 HFM1A2PYH4 1435 aa29.03■■■□□ 2.24
UPF1-212ENST00000601689 NAIPQ13075 1403 aa29.03■■■□□ 2.24
UPF1-212ENST00000601689 IQGAP3Q86VI3 1631 aa29.01■■■□□ 2.23
UPF1-212ENST00000601689 ANKLE2Q86XL3 938 aa28.99■■■□□ 2.23
UPF1-212ENST00000601689 PTPRTO14522 1441 aa28.99■■■□□ 2.23
UPF1-212ENST00000601689 SLC52A1Q9NWF4 448 aa28.98■■■□□ 2.23
UPF1-212ENST00000601689 TRIM52Q96A61 297 aa28.97■■■□□ 2.23
UPF1-212ENST00000601689 NCKAP5LQ9HCH0 1330 aa28.96■■■□□ 2.23
UPF1-212ENST00000601689 ACIN1Q9UKV3 1341 aaKnown RBP28.96■■■□□ 2.23
UPF1-212ENST00000601689 NOS1P29475 1434 aa28.93■■■□□ 2.22
UPF1-212ENST00000601689 POLR1AO95602 1720 aaPredicted RBP28.91■■■□□ 2.22
UPF1-212ENST00000601689 IDI1Q13907 227 aa28.9■■■□□ 2.22
UPF1-212ENST00000601689 E9PCH4 1651 aa28.89■■■□□ 2.22
UPF1-212ENST00000601689 UBR1Q8IWV7 1749 aa28.89■■■□□ 2.22
UPF1-212ENST00000601689 EID1Q9Y6B2 187 aa28.89■■■□□ 2.22
UPF1-212ENST00000601689 PIK3C2BO00750 1634 aa28.87■■■□□ 2.21
UPF1-212ENST00000601689 KDM5AP29375 1690 aaKnown RBP28.86■■■□□ 2.21
UPF1-212ENST00000601689 SYNMO15061 1565 aa28.86■■■□□ 2.21
UPF1-212ENST00000601689 HDGFP51858 240 aaKnown RBP28.83■■■□□ 2.21
UPF1-212ENST00000601689 SLC4A1APQ9BWU0 796 aaKnown RBP28.83■■■□□ 2.21
UPF1-212ENST00000601689 CHGAP10645 457 aaKnown RBP28.81■■■□□ 2.2
UPF1-212ENST00000601689 TXNDC2Q86VQ3 553 aa28.81■■■□□ 2.2
UPF1-212ENST00000601689 SETD5Q9C0A6 1442 aa28.79■■■□□ 2.2
UPF1-212ENST00000601689 ADGRB3O60242 1522 aa28.78■■■□□ 2.2
UPF1-212ENST00000601689 NPHP4O75161 1426 aaPredicted RBP28.77■■■□□ 2.2
UPF1-212ENST00000601689 TMEM2Q9UHN6 1383 aa28.77■■■□□ 2.2
UPF1-212ENST00000601689 SLIT1O75093 1534 aa28.77■■■□□ 2.2
UPF1-212ENST00000601689 SCAF11Q99590 1463 aaKnown RBP28.77■■■□□ 2.2
UPF1-212ENST00000601689 SPHKAPQ2M3C7 1700 aa28.77■■■□□ 2.2
UPF1-212ENST00000601689 MED14O60244 1454 aa28.76■■■□□ 2.19
UPF1-212ENST00000601689 ARHGAP23Q9P227 1491 aa28.74■■■□□ 2.19
UPF1-212ENST00000601689 CERKQ8TCT0 537 aa28.74■■■□□ 2.19
UPF1-212ENST00000601689 IQGAP1P46940 1657 aa28.74■■■□□ 2.19
UPF1-212ENST00000601689 NEURL4Q96JN8 1562 aa28.73■■■□□ 2.19
UPF1-212ENST00000601689 PPP1R15AO75807 674 aaPredicted RBP28.7■■■□□ 2.18
UPF1-212ENST00000601689 LTKP29376 864 aa28.69■■■□□ 2.18
UPF1-212ENST00000601689 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.69■■■□□ 2.18
UPF1-212ENST00000601689 BCANQ96GW7 911 aa28.69■■■□□ 2.18
UPF1-212ENST00000601689 MYO5BQ9ULV0 1848 aa28.67■■■□□ 2.18
UPF1-212ENST00000601689 MPHOSPH9Q99550 1183 aa28.67■■■□□ 2.18
UPF1-212ENST00000601689 TMEM131LA2VDJ0 1609 aa28.67■■■□□ 2.18
UPF1-212ENST00000601689 ZNF335Q9H4Z2 1342 aaPredicted RBP28.67■■■□□ 2.18
UPF1-212ENST00000601689 RAB3GAP2Q9H2M9 1393 aa28.65■■■□□ 2.18
UPF1-212ENST00000601689 FBXO41Q8TF61 875 aa28.64■■■□□ 2.18
UPF1-212ENST00000601689 TRPM2O94759 1503 aa28.64■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms