RNA–Protein interactions for RNA: ENST00000600791.5

SHKBP1-226, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 494 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-226ENST00000600791 PTPRTO14522 1441 aa23.68■■□□□ 1.38
SHKBP1-226ENST00000600791 CEP170BQ9Y4F5 1589 aaPredicted RBP23.67■■□□□ 1.38
SHKBP1-226ENST00000600791 CERKQ8TCT0 537 aa23.67■■□□□ 1.38
SHKBP1-226ENST00000600791 APLP2Q06481 763 aa23.64■■□□□ 1.37
SHKBP1-226ENST00000600791 RNF17Q9BXT8 1623 aaKnown RBP23.62■■□□□ 1.37
SHKBP1-226ENST00000600791 PZPP20742 1482 aa23.62■■□□□ 1.37
SHKBP1-226ENST00000600791 PTPN23Q9H3S7 1636 aa23.61■■□□□ 1.37
SHKBP1-226ENST00000600791 EIF2AK4Q9P2K8 1649 aaKnown RBP23.61■■□□□ 1.37
SHKBP1-226ENST00000600791 CROCC2H7BZ55 1655 aa23.6■■□□□ 1.37
SHKBP1-226ENST00000600791 PLA2R1Q13018 1463 aa23.6■■□□□ 1.37
SHKBP1-226ENST00000600791 WASHC2CQ9Y4E1 1318 aa23.59■■□□□ 1.37
SHKBP1-226ENST00000600791 A2ML1A8K2U0 1454 aa23.58■■□□□ 1.37
SHKBP1-226ENST00000600791 SHANK2Q9UPX8 1470 aa23.57■■□□□ 1.36
SHKBP1-226ENST00000600791 TCOF1Q13428 1488 aaKnown RBP23.56■■□□□ 1.36
SHKBP1-226ENST00000600791 DNMT1P26358 1616 aaKnown RBP23.56■■□□□ 1.36
SHKBP1-226ENST00000600791 MROH1Q8NDA8 1641 aa23.56■■□□□ 1.36
SHKBP1-226ENST00000600791 FBXO31Q5XUX0 539 aaPredicted RBP23.56■■□□□ 1.36
SHKBP1-226ENST00000600791 ZC3H13Q5T200 1668 aaKnown RBP23.56■■□□□ 1.36
SHKBP1-226ENST00000600791 FGD6Q6ZV73 1430 aa23.56■■□□□ 1.36
SHKBP1-226ENST00000600791 TNRQ92752 1358 aa23.55■■□□□ 1.36
SHKBP1-226ENST00000600791 DUOX2Q9NRD8 1548 aa23.55■■□□□ 1.36
SHKBP1-226ENST00000600791 ABCC5O15440 1437 aa23.55■■□□□ 1.36
SHKBP1-226ENST00000600791 NCKAP5LQ9HCH0 1330 aa23.55■■□□□ 1.36
SHKBP1-226ENST00000600791 LTBP4Q8N2S1 1624 aa23.55■■□□□ 1.36
SHKBP1-226ENST00000600791 ABCC3O15438 1527 aa23.54■■□□□ 1.36
SHKBP1-226ENST00000600791 DAPK1P53355 1430 aa23.51■■□□□ 1.35
SHKBP1-226ENST00000600791 PKD2Q13563 968 aa23.51■■□□□ 1.35
SHKBP1-226ENST00000600791 KIF15Q9NS87 1388 aa23.51■■□□□ 1.35
SHKBP1-226ENST00000600791 CEP152O94986 1710 aa23.49■■□□□ 1.35
SHKBP1-226ENST00000600791 ERBINQ96RT1 1412 aa23.47■■□□□ 1.35
SHKBP1-226ENST00000600791 NLRP1Q9C000 1473 aa23.47■■□□□ 1.35
SHKBP1-226ENST00000600791 POLR1AO95602 1720 aaPredicted RBP23.47■■□□□ 1.35
SHKBP1-226ENST00000600791 PRDM15P57071 1507 aaPredicted RBP23.46■■□□□ 1.35
SHKBP1-226ENST00000600791 SPATA31D1Q6ZQQ2 1576 aa23.46■■□□□ 1.35
SHKBP1-226ENST00000600791 RRP7BPQ9NSQ0 103 aa23.44■■□□□ 1.34
SHKBP1-226ENST00000600791 NEURL4Q96JN8 1562 aa23.44■■□□□ 1.34
SHKBP1-226ENST00000600791 ERVK-7P63135 1459 aa23.43■■□□□ 1.34
SHKBP1-226ENST00000600791 IQSEC2Q5JU85 1478 aa23.43■■□□□ 1.34
SHKBP1-226ENST00000600791 ZNF335Q9H4Z2 1342 aaPredicted RBP23.43■■□□□ 1.34
SHKBP1-226ENST00000600791 DEPDC5O75140 1603 aa23.43■■□□□ 1.34
SHKBP1-226ENST00000600791 UGGT1Q9NYU2 1555 aa23.43■■□□□ 1.34
SHKBP1-226ENST00000600791 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.4■■□□□ 1.34
SHKBP1-226ENST00000600791 ANKRD30AQ9BXX3 1397 aa23.39■■□□□ 1.33
SHKBP1-226ENST00000600791 CHIC2Q9UKJ5 165 aa23.37■■□□□ 1.33
SHKBP1-226ENST00000600791 CFAP65Q6ZU64 1925 aaKnown RBP23.36■■□□□ 1.33
SHKBP1-226ENST00000600791 THEMISQ8N1K5 641 aaPredicted RBP23.36■■□□□ 1.33
SHKBP1-226ENST00000600791 ADGRL2O95490 1459 aa23.36■■□□□ 1.33
SHKBP1-226ENST00000600791 ARHGAP31Q2M1Z3 1444 aa23.35■■□□□ 1.33
SHKBP1-226ENST00000600791 FAM50AQ14320 339 aaKnown RBP23.33■■□□□ 1.33
SHKBP1-226ENST00000600791 ANKLE2Q86XL3 938 aa23.33■■□□□ 1.33
SHKBP1-226ENST00000600791 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.32■■□□□ 1.32
SHKBP1-226ENST00000600791 VWDEQ8N2E2 1590 aa23.31■■□□□ 1.32
SHKBP1-226ENST00000600791 MED14O60244 1454 aa23.31■■□□□ 1.32
SHKBP1-226ENST00000600791 UBR1Q8IWV7 1749 aa23.31■■□□□ 1.32
SHKBP1-226ENST00000600791 KANK1Q14678 1352 aa23.31■■□□□ 1.32
SHKBP1-226ENST00000600791 LMTK2Q8IWU2 1503 aa23.3■■□□□ 1.32
SHKBP1-226ENST00000600791 NPHP4O75161 1426 aaPredicted RBP23.3■■□□□ 1.32
SHKBP1-226ENST00000600791 IQGAP1P46940 1657 aa23.28■■□□□ 1.32
SHKBP1-226ENST00000600791 CPS1P31327 1500 aa23.25■■□□□ 1.31
SHKBP1-226ENST00000600791 EFCAB6Q5THR3 1501 aa23.24■■□□□ 1.31
SHKBP1-226ENST00000600791 ANKRD50Q9ULJ7 1429 aa23.24■■□□□ 1.31
SHKBP1-226ENST00000600791 PIK3C2BO00750 1634 aa23.23■■□□□ 1.31
SHKBP1-226ENST00000600791 SLIT1O75093 1534 aa23.22■■□□□ 1.31
SHKBP1-226ENST00000600791 ARHGAP23Q9P227 1491 aa23.21■■□□□ 1.31
SHKBP1-226ENST00000600791 SYNMO15061 1565 aa23.2■■□□□ 1.3
SHKBP1-226ENST00000600791 SCAF11Q99590 1463 aaKnown RBP23.2■■□□□ 1.3
SHKBP1-226ENST00000600791 UBAP1LF5GYI3 381 aa23.2■■□□□ 1.3
SHKBP1-226ENST00000600791 KDM5AP29375 1690 aaKnown RBP23.17■■□□□ 1.3
SHKBP1-226ENST00000600791 NOS1P29475 1434 aa23.16■■□□□ 1.3
SHKBP1-226ENST00000600791 STRCP1A6NGW2 1772 aa23.16■■□□□ 1.3
SHKBP1-226ENST00000600791 UNC13BO14795 1591 aa23.15■■□□□ 1.3
SHKBP1-226ENST00000600791 TET3O43151 1660 aa23.14■■□□□ 1.29
SHKBP1-226ENST00000600791 LTKP29376 864 aa23.14■■□□□ 1.29
SHKBP1-226ENST00000600791 ROCK1Q13464 1354 aa23.14■■□□□ 1.29
SHKBP1-226ENST00000600791 RPRD2Q5VT52 1461 aaKnown RBP23.13■■□□□ 1.29
SHKBP1-226ENST00000600791 TMEM2Q9UHN6 1383 aa23.13■■□□□ 1.29
SHKBP1-226ENST00000600791 IDI1Q13907 227 aa23.12■■□□□ 1.29
SHKBP1-226ENST00000600791 TXNDC2Q86VQ3 553 aa23.12■■□□□ 1.29
SHKBP1-226ENST00000600791 PPARGC1BQ86YN6 1023 aaKnown RBP23.12■■□□□ 1.29
SHKBP1-226ENST00000600791 STAG3Q9UJ98 1225 aa23.11■■□□□ 1.29
SHKBP1-226ENST00000600791 ADGRB3O60242 1522 aa23.11■■□□□ 1.29
SHKBP1-226ENST00000600791 GCC2Q8IWJ2 1684 aa23.1■■□□□ 1.29
SHKBP1-226ENST00000600791 EID1Q9Y6B2 187 aa23.09■■□□□ 1.29
SHKBP1-226ENST00000600791 LRRC7Q96NW7 1537 aa23.08■■□□□ 1.28
SHKBP1-226ENST00000600791 ALKQ9UM73 1620 aa23.06■■□□□ 1.28
SHKBP1-226ENST00000600791 IQGAP3Q86VI3 1631 aa23.05■■□□□ 1.28
SHKBP1-226ENST00000600791 DISP3Q9P2K9 1392 aa23.05■■□□□ 1.28
SHKBP1-226ENST00000600791 TOM1O60784 492 aa23.05■■□□□ 1.28
SHKBP1-226ENST00000600791 ITGAEP38570 1179 aa23.05■■□□□ 1.28
SHKBP1-226ENST00000600791 SLC52A1Q9NWF4 448 aa23.05■■□□□ 1.28
SHKBP1-226ENST00000600791 E9PCH4 1651 aa23.03■■□□□ 1.28
SHKBP1-226ENST00000600791 SCAF1Q9H7N4 1312 aaKnown RBP23.03■■□□□ 1.28
SHKBP1-226ENST00000600791 PIP4K2BP78356 416 aa23.02■■□□□ 1.28
SHKBP1-226ENST00000600791 MYO5BQ9ULV0 1848 aa23.01■■□□□ 1.27
SHKBP1-226ENST00000600791 TMEM131LA2VDJ0 1609 aa22.99■■□□□ 1.27
SHKBP1-226ENST00000600791 RRBP1Q9P2E9 1410 aaKnown RBP22.99■■□□□ 1.27
SHKBP1-226ENST00000600791 XIRP1Q702N8 1843 aaKnown RBP22.97■■□□□ 1.27
SHKBP1-226ENST00000600791 ZFYVE9O95405 1425 aa22.97■■□□□ 1.27
SHKBP1-226ENST00000600791 HSPA1LP34931 641 aa22.96■■□□□ 1.27
SHKBP1-226ENST00000600791 NUP155O75694 1391 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms