RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 KDM5DQ9BY66 1539 aa24.69■■□□□ 1.54
VRK3-221ENST00000600284 CAMSAP1Q5T5Y3 1602 aa24.65■■□□□ 1.54
VRK3-221ENST00000600284 MYO3AQ8NEV4 1616 aa24.64■■□□□ 1.54
VRK3-221ENST00000600284 PZPP20742 1482 aa24.64■■□□□ 1.54
VRK3-221ENST00000600284 ZNF142P52746 1687 aaPredicted RBP24.64■■□□□ 1.53
VRK3-221ENST00000600284 CEP170BQ9Y4F5 1589 aaPredicted RBP24.63■■□□□ 1.53
VRK3-221ENST00000600284 FGD6Q6ZV73 1430 aa24.63■■□□□ 1.53
VRK3-221ENST00000600284 PKD2Q13563 968 aa24.63■■□□□ 1.53
VRK3-221ENST00000600284 PTPN23Q9H3S7 1636 aa24.63■■□□□ 1.53
VRK3-221ENST00000600284 PLA2R1Q13018 1463 aa24.63■■□□□ 1.53
VRK3-221ENST00000600284 SHANK2Q9UPX8 1470 aa24.63■■□□□ 1.53
VRK3-221ENST00000600284 ABCC5O15440 1437 aa24.62■■□□□ 1.53
VRK3-221ENST00000600284 FBXO31Q5XUX0 539 aaPredicted RBP24.62■■□□□ 1.53
VRK3-221ENST00000600284 TCOF1Q13428 1488 aaKnown RBP24.62■■□□□ 1.53
VRK3-221ENST00000600284 DUOX2Q9NRD8 1548 aa24.61■■□□□ 1.53
VRK3-221ENST00000600284 EIF2AK4Q9P2K8 1649 aaKnown RBP24.61■■□□□ 1.53
VRK3-221ENST00000600284 TNRQ92752 1358 aa24.61■■□□□ 1.53
VRK3-221ENST00000600284 A2ML1A8K2U0 1454 aa24.61■■□□□ 1.53
VRK3-221ENST00000600284 RNF17Q9BXT8 1623 aaKnown RBP24.61■■□□□ 1.53
VRK3-221ENST00000600284 DAPK1P53355 1430 aa24.58■■□□□ 1.53
VRK3-221ENST00000600284 NCKAP5LQ9HCH0 1330 aa24.58■■□□□ 1.52
VRK3-221ENST00000600284 KIF15Q9NS87 1388 aa24.57■■□□□ 1.52
VRK3-221ENST00000600284 RRP7BPQ9NSQ0 103 aa24.55■■□□□ 1.52
VRK3-221ENST00000600284 DNMT1P26358 1616 aaKnown RBP24.54■■□□□ 1.52
VRK3-221ENST00000600284 ERBINQ96RT1 1412 aa24.54■■□□□ 1.52
VRK3-221ENST00000600284 CROCC2H7BZ55 1655 aa24.54■■□□□ 1.52
VRK3-221ENST00000600284 ZC3H13Q5T200 1668 aaKnown RBP24.54■■□□□ 1.52
VRK3-221ENST00000600284 ABCC3O15438 1527 aa24.54■■□□□ 1.52
VRK3-221ENST00000600284 NLRP1Q9C000 1473 aa24.52■■□□□ 1.52
VRK3-221ENST00000600284 ANKRD30AQ9BXX3 1397 aa24.51■■□□□ 1.51
VRK3-221ENST00000600284 MROH1Q8NDA8 1641 aa24.5■■□□□ 1.51
VRK3-221ENST00000600284 THEMISQ8N1K5 641 aaPredicted RBP24.5■■□□□ 1.51
VRK3-221ENST00000600284 LTBP4Q8N2S1 1624 aa24.5■■□□□ 1.51
VRK3-221ENST00000600284 CHIC2Q9UKJ5 165 aa24.47■■□□□ 1.51
VRK3-221ENST00000600284 SPATA31D1Q6ZQQ2 1576 aa24.46■■□□□ 1.51
VRK3-221ENST00000600284 PRDM15P57071 1507 aaPredicted RBP24.45■■□□□ 1.51
VRK3-221ENST00000600284 IQSEC2Q5JU85 1478 aa24.45■■□□□ 1.51
VRK3-221ENST00000600284 ARHGAP31Q2M1Z3 1444 aa24.44■■□□□ 1.5
VRK3-221ENST00000600284 FAM50AQ14320 339 aaKnown RBP24.44■■□□□ 1.5
VRK3-221ENST00000600284 ANKLE2Q86XL3 938 aa24.44■■□□□ 1.5
VRK3-221ENST00000600284 UGGT1Q9NYU2 1555 aa24.44■■□□□ 1.5
VRK3-221ENST00000600284 ERVK-7P63135 1459 aa24.44■■□□□ 1.5
VRK3-221ENST00000600284 KANK1Q14678 1352 aa24.42■■□□□ 1.5
VRK3-221ENST00000600284 ADGRL2O95490 1459 aa24.42■■□□□ 1.5
VRK3-221ENST00000600284 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.42■■□□□ 1.5
VRK3-221ENST00000600284 ZNF335Q9H4Z2 1342 aaPredicted RBP24.41■■□□□ 1.5
VRK3-221ENST00000600284 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.4■■□□□ 1.5
VRK3-221ENST00000600284 CEP152O94986 1710 aa24.4■■□□□ 1.5
VRK3-221ENST00000600284 DEPDC5O75140 1603 aa24.39■■□□□ 1.5
VRK3-221ENST00000600284 POLR1AO95602 1720 aaPredicted RBP24.35■■□□□ 1.49
VRK3-221ENST00000600284 NEURL4Q96JN8 1562 aa24.35■■□□□ 1.49
VRK3-221ENST00000600284 MED14O60244 1454 aa24.35■■□□□ 1.49
VRK3-221ENST00000600284 LMTK2Q8IWU2 1503 aa24.35■■□□□ 1.49
VRK3-221ENST00000600284 VWDEQ8N2E2 1590 aa24.33■■□□□ 1.48
VRK3-221ENST00000600284 NPHP4O75161 1426 aaPredicted RBP24.31■■□□□ 1.48
VRK3-221ENST00000600284 ANKRD50Q9ULJ7 1429 aa24.31■■□□□ 1.48
VRK3-221ENST00000600284 CFAP65Q6ZU64 1925 aaKnown RBP24.29■■□□□ 1.48
VRK3-221ENST00000600284 ROCK1Q13464 1354 aa24.27■■□□□ 1.48
VRK3-221ENST00000600284 UBR1Q8IWV7 1749 aa24.26■■□□□ 1.47
VRK3-221ENST00000600284 CPS1P31327 1500 aa24.25■■□□□ 1.47
VRK3-221ENST00000600284 ARHGAP23Q9P227 1491 aa24.23■■□□□ 1.47
VRK3-221ENST00000600284 SLIT1O75093 1534 aa24.23■■□□□ 1.47
VRK3-221ENST00000600284 EFCAB6Q5THR3 1501 aa24.22■■□□□ 1.47
VRK3-221ENST00000600284 IDI1Q13907 227 aa24.22■■□□□ 1.47
VRK3-221ENST00000600284 IQGAP1P46940 1657 aa24.21■■□□□ 1.47
VRK3-221ENST00000600284 SCAF11Q99590 1463 aaKnown RBP24.21■■□□□ 1.47
VRK3-221ENST00000600284 NOS1P29475 1434 aa24.21■■□□□ 1.47
VRK3-221ENST00000600284 UBAP1LF5GYI3 381 aa24.21■■□□□ 1.47
VRK3-221ENST00000600284 TXNDC2Q86VQ3 553 aa24.21■■□□□ 1.47
VRK3-221ENST00000600284 STAG3Q9UJ98 1225 aa24.21■■□□□ 1.47
VRK3-221ENST00000600284 EID1Q9Y6B2 187 aa24.21■■□□□ 1.47
VRK3-221ENST00000600284 RPRD2Q5VT52 1461 aaKnown RBP24.2■■□□□ 1.47
VRK3-221ENST00000600284 SLC52A1Q9NWF4 448 aa24.2■■□□□ 1.46
VRK3-221ENST00000600284 LTKP29376 864 aa24.19■■□□□ 1.46
VRK3-221ENST00000600284 PPARGC1BQ86YN6 1023 aaKnown RBP24.18■■□□□ 1.46
VRK3-221ENST00000600284 KDM5AP29375 1690 aaKnown RBP24.18■■□□□ 1.46
VRK3-221ENST00000600284 PIK3C2BO00750 1634 aa24.17■■□□□ 1.46
VRK3-221ENST00000600284 TMEM2Q9UHN6 1383 aa24.17■■□□□ 1.46
VRK3-221ENST00000600284 SYNMO15061 1565 aa24.15■■□□□ 1.46
VRK3-221ENST00000600284 UNC13BO14795 1591 aa24.13■■□□□ 1.45
VRK3-221ENST00000600284 TOM1O60784 492 aa24.13■■□□□ 1.45
VRK3-221ENST00000600284 TET3O43151 1660 aa24.13■■□□□ 1.45
VRK3-221ENST00000600284 ITGAEP38570 1179 aa24.12■■□□□ 1.45
VRK3-221ENST00000600284 ADGRB3O60242 1522 aa24.07■■□□□ 1.44
VRK3-221ENST00000600284 GCC2Q8IWJ2 1684 aa24.07■■□□□ 1.44
VRK3-221ENST00000600284 RRBP1Q9P2E9 1410 aaKnown RBP24.07■■□□□ 1.44
VRK3-221ENST00000600284 NUP155O75694 1391 aa24.06■■□□□ 1.44
VRK3-221ENST00000600284 LRRC7Q96NW7 1537 aa24.05■■□□□ 1.44
VRK3-221ENST00000600284 IQGAP3Q86VI3 1631 aa24.04■■□□□ 1.44
VRK3-221ENST00000600284 HDGFP51858 240 aaKnown RBP24.04■■□□□ 1.44
VRK3-221ENST00000600284 STRCP1A6NGW2 1772 aa24.03■■□□□ 1.44
VRK3-221ENST00000600284 PIP4K2BP78356 416 aa24.01■■□□□ 1.43
VRK3-221ENST00000600284 E9PCH4 1651 aa23.99■■□□□ 1.43
VRK3-221ENST00000600284 SCAF1Q9H7N4 1312 aaKnown RBP23.99■■□□□ 1.43
VRK3-221ENST00000600284 DISP3Q9P2K9 1392 aa23.98■■□□□ 1.43
VRK3-221ENST00000600284 ZFYVE9O95405 1425 aa23.97■■□□□ 1.43
VRK3-221ENST00000600284 KCNA6P17658 529 aa23.97■■□□□ 1.43
VRK3-221ENST00000600284 TMEM131LA2VDJ0 1609 aa23.96■■□□□ 1.43
VRK3-221ENST00000600284 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.96■■□□□ 1.43
VRK3-221ENST00000600284 SLC26A8Q96RN1 970 aa23.96■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms