RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 FAM135AQ9P2D6 1515 aa15.4■□□□□ 0.06
VRK3-216ENST00000599342 ZNF142P52746 1687 aaPredicted RBP15.4■□□□□ 0.06
VRK3-216ENST00000599342 CEP170BQ9Y4F5 1589 aaPredicted RBP15.4■□□□□ 0.06
VRK3-216ENST00000599342 MAST1Q9Y2H9 1570 aa15.38■□□□□ 0.05
VRK3-216ENST00000599342 WASHC2CQ9Y4E1 1318 aa15.38■□□□□ 0.05
VRK3-216ENST00000599342 PLA2R1Q13018 1463 aa15.36■□□□□ 0.05
VRK3-216ENST00000599342 PZPP20742 1482 aa15.35■□□□□ 0.05
VRK3-216ENST00000599342 A2ML1A8K2U0 1454 aa15.34■□□□□ 0.05
VRK3-216ENST00000599342 PKD2Q13563 968 aa15.34■□□□□ 0.05
VRK3-216ENST00000599342 NCKAP5LQ9HCH0 1330 aa15.34■□□□□ 0.05
VRK3-216ENST00000599342 TNRQ92752 1358 aa15.34■□□□□ 0.05
VRK3-216ENST00000599342 RNF17Q9BXT8 1623 aaKnown RBP15.32■□□□□ 0.04
VRK3-216ENST00000599342 EIF2AK4Q9P2K8 1649 aaKnown RBP15.32■□□□□ 0.04
VRK3-216ENST00000599342 FBXO31Q5XUX0 539 aaPredicted RBP15.32■□□□□ 0.04
VRK3-216ENST00000599342 TCOF1Q13428 1488 aaKnown RBP15.32■□□□□ 0.04
VRK3-216ENST00000599342 PTPN23Q9H3S7 1636 aa15.32■□□□□ 0.04
VRK3-216ENST00000599342 DNMT1P26358 1616 aaKnown RBP15.31■□□□□ 0.04
VRK3-216ENST00000599342 ZC3H13Q5T200 1668 aaKnown RBP15.31■□□□□ 0.04
VRK3-216ENST00000599342 LTBP4Q8N2S1 1624 aa15.3■□□□□ 0.04
VRK3-216ENST00000599342 DUOX2Q9NRD8 1548 aa15.3■□□□□ 0.04
VRK3-216ENST00000599342 SHANK2Q9UPX8 1470 aa15.3■□□□□ 0.04
VRK3-216ENST00000599342 CROCC2H7BZ55 1655 aa15.28■□□□□ 0.04
VRK3-216ENST00000599342 ABCC3O15438 1527 aa15.28■□□□□ 0.04
VRK3-216ENST00000599342 NLRP1Q9C000 1473 aa15.28■□□□□ 0.04
VRK3-216ENST00000599342 FGD6Q6ZV73 1430 aa15.28■□□□□ 0.04
VRK3-216ENST00000599342 KIF15Q9NS87 1388 aa15.28■□□□□ 0.04
VRK3-216ENST00000599342 IQSEC2Q5JU85 1478 aa15.27■□□□□ 0.04
VRK3-216ENST00000599342 ABCC5O15440 1437 aa15.27■□□□□ 0.04
VRK3-216ENST00000599342 DAPK1P53355 1430 aa15.27■□□□□ 0.04
VRK3-216ENST00000599342 ZNF335Q9H4Z2 1342 aaPredicted RBP15.26■□□□□ 0.03
VRK3-216ENST00000599342 ERBINQ96RT1 1412 aa15.26■□□□□ 0.03
VRK3-216ENST00000599342 MROH1Q8NDA8 1641 aa15.25■□□□□ 0.03
VRK3-216ENST00000599342 UGGT1Q9NYU2 1555 aa15.25■□□□□ 0.03
VRK3-216ENST00000599342 RRP7BPQ9NSQ0 103 aa15.25■□□□□ 0.03
VRK3-216ENST00000599342 POLR1AO95602 1720 aaPredicted RBP15.24■□□□□ 0.03
VRK3-216ENST00000599342 THEMISQ8N1K5 641 aaPredicted RBP15.24■□□□□ 0.03
VRK3-216ENST00000599342 SPATA31D1Q6ZQQ2 1576 aa15.24■□□□□ 0.03
VRK3-216ENST00000599342 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.24■□□□□ 0.03
VRK3-216ENST00000599342 ERVK-7P63135 1459 aa15.23■□□□□ 0.03
VRK3-216ENST00000599342 CEP152O94986 1710 aa15.23■□□□□ 0.03
VRK3-216ENST00000599342 PRDM15P57071 1507 aaPredicted RBP15.22■□□□□ 0.03
VRK3-216ENST00000599342 ANKLE2Q86XL3 938 aa15.22■□□□□ 0.03
VRK3-216ENST00000599342 ANKRD30AQ9BXX3 1397 aa15.22■□□□□ 0.03
VRK3-216ENST00000599342 NEURL4Q96JN8 1562 aa15.21■□□□□ 0.03
VRK3-216ENST00000599342 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.2■□□□□ 0.02
VRK3-216ENST00000599342 CHIC2Q9UKJ5 165 aa15.2■□□□□ 0.02
VRK3-216ENST00000599342 KANK1Q14678 1352 aa15.2■□□□□ 0.02
VRK3-216ENST00000599342 FAM50AQ14320 339 aaKnown RBP15.19■□□□□ 0.02
VRK3-216ENST00000599342 NPHP4O75161 1426 aaPredicted RBP15.17■□□□□ 0.02
VRK3-216ENST00000599342 ARHGAP31Q2M1Z3 1444 aa15.17■□□□□ 0.02
VRK3-216ENST00000599342 DEPDC5O75140 1603 aa15.17■□□□□ 0.02
VRK3-216ENST00000599342 UBAP1LF5GYI3 381 aa15.16■□□□□ 0.02
VRK3-216ENST00000599342 CPS1P31327 1500 aa15.16■□□□□ 0.02
VRK3-216ENST00000599342 MED14O60244 1454 aa15.15■□□□□ 0.02
VRK3-216ENST00000599342 ADGRL2O95490 1459 aa15.14■□□□□ 0.01
VRK3-216ENST00000599342 IQGAP1P46940 1657 aa15.13■□□□□ 0.01
VRK3-216ENST00000599342 UBR1Q8IWV7 1749 aa15.12■□□□□ 0.01
VRK3-216ENST00000599342 CFAP65Q6ZU64 1925 aaKnown RBP15.12■□□□□ 0.01
VRK3-216ENST00000599342 LMTK2Q8IWU2 1503 aa15.12■□□□□ 0.01
VRK3-216ENST00000599342 VWDEQ8N2E2 1590 aa15.11■□□□□ 0.01
VRK3-216ENST00000599342 SCAF11Q99590 1463 aaKnown RBP15.1■□□□□ 0.01
VRK3-216ENST00000599342 STAG3Q9UJ98 1225 aa15.1■□□□□ 0.01
VRK3-216ENST00000599342 ANKRD50Q9ULJ7 1429 aa15.09■□□□□ 0.01
VRK3-216ENST00000599342 DISP3Q9P2K9 1392 aa15.09■□□□□ 0.01
VRK3-216ENST00000599342 SLIT1O75093 1534 aa15.08■□□□□ 0.01
VRK3-216ENST00000599342 EFCAB6Q5THR3 1501 aa15.08■□□□□ 0.01
VRK3-216ENST00000599342 EID1Q9Y6B2 187 aa15.08■□□□□ 0
VRK3-216ENST00000599342 SCAF1Q9H7N4 1312 aaKnown RBP15.08■□□□□ 0
VRK3-216ENST00000599342 ARHGAP23Q9P227 1491 aa15.08■□□□□ 0
VRK3-216ENST00000599342 PIK3C2BO00750 1634 aa15.07■□□□□ 0
VRK3-216ENST00000599342 TOM1O60784 492 aa15.07■□□□□ 0
VRK3-216ENST00000599342 TXNDC2Q86VQ3 553 aa15.07■□□□□ 0
VRK3-216ENST00000599342 PIP4K2BP78356 416 aa15.05■□□□□ -0
VRK3-216ENST00000599342 TMEM2Q9UHN6 1383 aa15.05■□□□□ -0
VRK3-216ENST00000599342 KDM5AP29375 1690 aaKnown RBP15.04■□□□□ -0
VRK3-216ENST00000599342 SYNMO15061 1565 aa15.04■□□□□ -0
VRK3-216ENST00000599342 RPRD2Q5VT52 1461 aaKnown RBP15.04■□□□□ -0
VRK3-216ENST00000599342 NOS1P29475 1434 aa15.04■□□□□ -0
VRK3-216ENST00000599342 LTKP29376 864 aa15.04■□□□□ -0
VRK3-216ENST00000599342 IDI1Q13907 227 aa15.03■□□□□ -0
VRK3-216ENST00000599342 ROCK1Q13464 1354 aa15.02■□□□□ -0
VRK3-216ENST00000599342 SLC52A1Q9NWF4 448 aa15.02■□□□□ -0
VRK3-216ENST00000599342 ADGRB3O60242 1522 aa15.02□□□□□ -0.01
VRK3-216ENST00000599342 TET3O43151 1660 aa15.01□□□□□ -0.01
VRK3-216ENST00000599342 LRRC7Q96NW7 1537 aa15.01□□□□□ -0.01
VRK3-216ENST00000599342 STRCP1A6NGW2 1772 aa15.01□□□□□ -0.01
VRK3-216ENST00000599342 UNC13BO14795 1591 aa15□□□□□ -0.01
VRK3-216ENST00000599342 ITGAEP38570 1179 aa15□□□□□ -0.01
VRK3-216ENST00000599342 PPARGC1BQ86YN6 1023 aaKnown RBP15□□□□□ -0.01
VRK3-216ENST00000599342 GCC2Q8IWJ2 1684 aa14.98□□□□□ -0.01
VRK3-216ENST00000599342 HSPA1LP34931 641 aa14.97□□□□□ -0.01
VRK3-216ENST00000599342 BCANQ96GW7 911 aa14.95□□□□□ -0.02
VRK3-216ENST00000599342 IQGAP3Q86VI3 1631 aa14.95□□□□□ -0.02
VRK3-216ENST00000599342 HDGFP51858 240 aaKnown RBP14.94□□□□□ -0.02
VRK3-216ENST00000599342 ILDR2Q71H61 639 aa14.94□□□□□ -0.02
VRK3-216ENST00000599342 ALKQ9UM73 1620 aa14.94□□□□□ -0.02
VRK3-216ENST00000599342 PPP1R15AO75807 674 aaPredicted RBP14.93□□□□□ -0.02
VRK3-216ENST00000599342 SLC26A8Q96RN1 970 aa14.93□□□□□ -0.02
VRK3-216ENST00000599342 NUP155O75694 1391 aa14.93□□□□□ -0.02
VRK3-216ENST00000599342 E9PCH4 1651 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms