RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 FGD6Q6ZV73 1430 aa21.79■■□□□ 1.08
LIG1-218ENST00000599322 PTPN23Q9H3S7 1636 aa21.77■■□□□ 1.08
LIG1-218ENST00000599322 FAM50AQ14320 339 aaKnown RBP21.77■■□□□ 1.08
LIG1-218ENST00000599322 PTPRKQ15262 1439 aa21.77■■□□□ 1.08
LIG1-218ENST00000599322 CEP170BQ9Y4F5 1589 aaPredicted RBP21.76■■□□□ 1.07
LIG1-218ENST00000599322 WASHC2CQ9Y4E1 1318 aa21.75■■□□□ 1.07
LIG1-218ENST00000599322 MAST1Q9Y2H9 1570 aa21.74■■□□□ 1.07
LIG1-218ENST00000599322 TCOF1Q13428 1488 aaKnown RBP21.71■■□□□ 1.07
LIG1-218ENST00000599322 RRP7BPQ9NSQ0 103 aa21.7■■□□□ 1.06
LIG1-218ENST00000599322 ABCC5O15440 1437 aa21.7■■□□□ 1.06
LIG1-218ENST00000599322 DAPK1P53355 1430 aa21.7■■□□□ 1.06
LIG1-218ENST00000599322 PLA2R1Q13018 1463 aa21.7■■□□□ 1.06
LIG1-218ENST00000599322 SHANK2Q9UPX8 1470 aa21.7■■□□□ 1.06
LIG1-218ENST00000599322 NCKAP5LQ9HCH0 1330 aa21.69■■□□□ 1.06
LIG1-218ENST00000599322 ANKRD30AQ9BXX3 1397 aa21.69■■□□□ 1.06
LIG1-218ENST00000599322 CHIC2Q9UKJ5 165 aa21.68■■□□□ 1.06
LIG1-218ENST00000599322 IQSEC2Q5JU85 1478 aa21.68■■□□□ 1.06
LIG1-218ENST00000599322 DNMT1P26358 1616 aaKnown RBP21.68■■□□□ 1.06
LIG1-218ENST00000599322 DUOX2Q9NRD8 1548 aa21.67■■□□□ 1.06
LIG1-218ENST00000599322 KIF15Q9NS87 1388 aa21.67■■□□□ 1.06
LIG1-218ENST00000599322 FAM135AQ9P2D6 1515 aa21.66■■□□□ 1.06
LIG1-218ENST00000599322 POLR1AO95602 1720 aaPredicted RBP21.66■■□□□ 1.06
LIG1-218ENST00000599322 PPARGC1BQ86YN6 1023 aaKnown RBP21.64■■□□□ 1.05
LIG1-218ENST00000599322 KDM5DQ9BY66 1539 aa21.64■■□□□ 1.05
LIG1-218ENST00000599322 A2ML1A8K2U0 1454 aa21.64■■□□□ 1.05
LIG1-218ENST00000599322 ZNF335Q9H4Z2 1342 aaPredicted RBP21.61■■□□□ 1.05
LIG1-218ENST00000599322 CROCC2H7BZ55 1655 aa21.61■■□□□ 1.05
LIG1-218ENST00000599322 EIF2AK4Q9P2K8 1649 aaKnown RBP21.61■■□□□ 1.05
LIG1-218ENST00000599322 ERBINQ96RT1 1412 aa21.61■■□□□ 1.05
LIG1-218ENST00000599322 KANK1Q14678 1352 aa21.61■■□□□ 1.05
LIG1-218ENST00000599322 PZPP20742 1482 aa21.6■■□□□ 1.05
LIG1-218ENST00000599322 PKD2Q13563 968 aa21.6■■□□□ 1.05
LIG1-218ENST00000599322 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.59■■□□□ 1.05
LIG1-218ENST00000599322 RNF17Q9BXT8 1623 aaKnown RBP21.58■■□□□ 1.05
LIG1-218ENST00000599322 NEURL4Q96JN8 1562 aa21.58■■□□□ 1.05
LIG1-218ENST00000599322 FBXO31Q5XUX0 539 aaPredicted RBP21.58■■□□□ 1.05
LIG1-218ENST00000599322 TNRQ92752 1358 aa21.57■■□□□ 1.04
LIG1-218ENST00000599322 ZC3H13Q5T200 1668 aaKnown RBP21.54■■□□□ 1.04
LIG1-218ENST00000599322 ITGAEP38570 1179 aa21.54■■□□□ 1.04
LIG1-218ENST00000599322 CFAP65Q6ZU64 1925 aaKnown RBP21.53■■□□□ 1.04
LIG1-218ENST00000599322 CEP152O94986 1710 aa21.52■■□□□ 1.04
LIG1-218ENST00000599322 MROH1Q8NDA8 1641 aa21.52■■□□□ 1.04
LIG1-218ENST00000599322 SPATA31D1Q6ZQQ2 1576 aa21.52■■□□□ 1.04
LIG1-218ENST00000599322 DISP3Q9P2K9 1392 aa21.51■■□□□ 1.03
LIG1-218ENST00000599322 ADGRL2O95490 1459 aa21.51■■□□□ 1.03
LIG1-218ENST00000599322 ABCC3O15438 1527 aa21.5■■□□□ 1.03
LIG1-218ENST00000599322 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.49■■□□□ 1.03
LIG1-218ENST00000599322 NLRP1Q9C000 1473 aa21.48■■□□□ 1.03
LIG1-218ENST00000599322 ILDR2Q71H61 639 aa21.48■■□□□ 1.03
LIG1-218ENST00000599322 THEMISQ8N1K5 641 aaPredicted RBP21.48■■□□□ 1.03
LIG1-218ENST00000599322 UGGT1Q9NYU2 1555 aa21.48■■□□□ 1.03
LIG1-218ENST00000599322 ANKRD50Q9ULJ7 1429 aa21.47■■□□□ 1.03
LIG1-218ENST00000599322 DEPDC5O75140 1603 aa21.47■■□□□ 1.03
LIG1-218ENST00000599322 UBAP1LF5GYI3 381 aa21.45■■□□□ 1.02
LIG1-218ENST00000599322 ROCK1Q13464 1354 aa21.45■■□□□ 1.02
LIG1-218ENST00000599322 PRDM15P57071 1507 aaPredicted RBP21.45■■□□□ 1.02
LIG1-218ENST00000599322 VWDEQ8N2E2 1590 aa21.44■■□□□ 1.02
LIG1-218ENST00000599322 IQGAP1P46940 1657 aa21.43■■□□□ 1.02
LIG1-218ENST00000599322 STRCP1A6NGW2 1772 aa21.42■■□□□ 1.02
LIG1-218ENST00000599322 MED14O60244 1454 aa21.42■■□□□ 1.02
LIG1-218ENST00000599322 CPS1P31327 1500 aa21.42■■□□□ 1.02
LIG1-218ENST00000599322 UBR1Q8IWV7 1749 aa21.41■■□□□ 1.02
LIG1-218ENST00000599322 ERVK-7P63135 1459 aa21.41■■□□□ 1.02
LIG1-218ENST00000599322 ARHGAP31Q2M1Z3 1444 aa21.41■■□□□ 1.02
LIG1-218ENST00000599322 ANKLE2Q86XL3 938 aa21.41■■□□□ 1.02
LIG1-218ENST00000599322 STAG3Q9UJ98 1225 aa21.4■■□□□ 1.02
LIG1-218ENST00000599322 NPHP4O75161 1426 aaPredicted RBP21.38■■□□□ 1.01
LIG1-218ENST00000599322 RRBP1Q9P2E9 1410 aaKnown RBP21.37■■□□□ 1.01
LIG1-218ENST00000599322 LMTK2Q8IWU2 1503 aa21.34■■□□□ 1.01
LIG1-218ENST00000599322 ALKQ9UM73 1620 aa21.34■■□□□ 1.01
LIG1-218ENST00000599322 EID1Q9Y6B2 187 aa21.31■■□□□ 1
LIG1-218ENST00000599322 SOCS7O14512 581 aa21.3■■□□□ 1
LIG1-218ENST00000599322 SLC52A1Q9NWF4 448 aa21.3■■□□□ 1
LIG1-218ENST00000599322 NUP155O75694 1391 aa21.3■■□□□ 1
LIG1-218ENST00000599322 PIK3C2BO00750 1634 aa21.29■■□□□ 1
LIG1-218ENST00000599322 SYNMO15061 1565 aa21.28■■□□□ 1
LIG1-218ENST00000599322 RPRD2Q5VT52 1461 aaKnown RBP21.28■■□□□ 1
LIG1-218ENST00000599322 PIP4K2BP78356 416 aa21.27■■□□□ 1
LIG1-218ENST00000599322 SLIT1O75093 1534 aa21.27■■□□□ 1
LIG1-218ENST00000599322 EFCAB6Q5THR3 1501 aa21.27■■□□□ 1
LIG1-218ENST00000599322 XIRP1Q702N8 1843 aaKnown RBP21.27■□□□□ 0.99
LIG1-218ENST00000599322 ARHGAP23Q9P227 1491 aa21.26■□□□□ 0.99
LIG1-218ENST00000599322 TOM1O60784 492 aa21.26■□□□□ 0.99
LIG1-218ENST00000599322 HSPA1LP34931 641 aa21.26■□□□□ 0.99
LIG1-218ENST00000599322 SCAF1Q9H7N4 1312 aaKnown RBP21.26■□□□□ 0.99
LIG1-218ENST00000599322 LRRC7Q96NW7 1537 aa21.25■□□□□ 0.99
LIG1-218ENST00000599322 IDI1Q13907 227 aa21.25■□□□□ 0.99
LIG1-218ENST00000599322 TXNDC2Q86VQ3 553 aa21.25■□□□□ 0.99
LIG1-218ENST00000599322 SCAF11Q99590 1463 aaKnown RBP21.25■□□□□ 0.99
LIG1-218ENST00000599322 UNC13BO14795 1591 aa21.24■□□□□ 0.99
LIG1-218ENST00000599322 HDGFP51858 240 aaKnown RBP21.24■□□□□ 0.99
LIG1-218ENST00000599322 MED1Q15648 1581 aaPredicted RBP21.23■□□□□ 0.99
LIG1-218ENST00000599322 TET3O43151 1660 aa21.23■□□□□ 0.99
LIG1-218ENST00000599322 KDM5AP29375 1690 aaKnown RBP21.23■□□□□ 0.99
LIG1-218ENST00000599322 NOS1P29475 1434 aa21.21■□□□□ 0.99
LIG1-218ENST00000599322 LTKP29376 864 aa21.21■□□□□ 0.99
LIG1-218ENST00000599322 TRIM52Q96A61 297 aa21.21■□□□□ 0.99
LIG1-218ENST00000599322 CHGAP10645 457 aaKnown RBP21.2■□□□□ 0.98
LIG1-218ENST00000599322 GCC2Q8IWJ2 1684 aa21.18■□□□□ 0.98
LIG1-218ENST00000599322 BCANQ96GW7 911 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 145.5 ms