RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 TSPY10P0CW01 314 aa27.86■■■□□ 2.05
LIG1-216ENST00000598938 SHANK2Q9UPX8 1470 aa27.86■■■□□ 2.05
LIG1-216ENST00000598938 DISP3Q9P2K9 1392 aa27.86■■■□□ 2.05
LIG1-216ENST00000598938 ZNF142P52746 1687 aaPredicted RBP27.82■■■□□ 2.04
LIG1-216ENST00000598938 SPATA31D1Q6ZQQ2 1576 aa27.82■■■□□ 2.04
LIG1-216ENST00000598938 PLXNC1O60486 1568 aa27.81■■■□□ 2.04
LIG1-216ENST00000598938 CAMSAP1Q5T5Y3 1602 aa27.81■■■□□ 2.04
LIG1-216ENST00000598938 ADGBQ8N7X0 1667 aa27.78■■■□□ 2.04
LIG1-216ENST00000598938 MYO3AQ8NEV4 1616 aa27.76■■■□□ 2.03
LIG1-216ENST00000598938 A2MP01023 1474 aa27.76■■■□□ 2.03
LIG1-216ENST00000598938 ZMYM3Q14202 1370 aa27.75■■■□□ 2.03
LIG1-216ENST00000598938 CLTCQ00610 1675 aaKnown RBP27.75■■■□□ 2.03
LIG1-216ENST00000598938 PLA2R1Q13018 1463 aa27.75■■■□□ 2.03
LIG1-216ENST00000598938 SOCS7O14512 581 aa27.74■■■□□ 2.03
LIG1-216ENST00000598938 PTPRKQ15262 1439 aa27.74■■■□□ 2.03
LIG1-216ENST00000598938 ADGRL2O95490 1459 aa27.73■■■□□ 2.03
LIG1-216ENST00000598938 ILDR2Q71H61 639 aa27.73■■■□□ 2.03
LIG1-216ENST00000598938 DHX29Q7Z478 1369 aaKnown RBP27.71■■■□□ 2.03
LIG1-216ENST00000598938 CEP170BQ9Y4F5 1589 aaPredicted RBP27.7■■■□□ 2.03
LIG1-216ENST00000598938 CHIC2Q9UKJ5 165 aa27.69■■■□□ 2.02
LIG1-216ENST00000598938 ANKRD30AQ9BXX3 1397 aa27.68■■■□□ 2.02
LIG1-216ENST00000598938 KIF15Q9NS87 1388 aa27.67■■■□□ 2.02
LIG1-216ENST00000598938 DUOX2Q9NRD8 1548 aa27.66■■■□□ 2.02
LIG1-216ENST00000598938 PKD2Q13563 968 aa27.65■■■□□ 2.02
LIG1-216ENST00000598938 PPP6R1Q9UPN7 881 aa27.65■■■□□ 2.02
LIG1-216ENST00000598938 ITGAEP38570 1179 aa27.64■■■□□ 2.02
LIG1-216ENST00000598938 ROCK1Q13464 1354 aa27.63■■■□□ 2.01
LIG1-216ENST00000598938 RRP7BPQ9NSQ0 103 aa27.63■■■□□ 2.01
LIG1-216ENST00000598938 EIF2AK4Q9P2K8 1649 aaKnown RBP27.59■■■□□ 2.01
LIG1-216ENST00000598938 ERBINQ96RT1 1412 aa27.58■■■□□ 2.01
LIG1-216ENST00000598938 NCKAP5LQ9HCH0 1330 aa27.58■■■□□ 2.01
LIG1-216ENST00000598938 ZNF335Q9H4Z2 1342 aaPredicted RBP27.57■■■□□ 2
LIG1-216ENST00000598938 FAM135AQ9P2D6 1515 aa27.57■■■□□ 2
LIG1-216ENST00000598938 A2ML1A8K2U0 1454 aa27.55■■■□□ 2
LIG1-216ENST00000598938 POLR1AO95602 1720 aaPredicted RBP27.54■■■□□ 2
LIG1-216ENST00000598938 KIF3BO15066 747 aa27.53■■■□□ 2
LIG1-216ENST00000598938 GGT6Q6P531 493 aa27.53■■■□□ 2
LIG1-216ENST00000598938 RNF17Q9BXT8 1623 aaKnown RBP27.52■■■□□ 2
LIG1-216ENST00000598938 ANKRD50Q9ULJ7 1429 aa27.5■■□□□ 1.99
LIG1-216ENST00000598938 UBAP1LF5GYI3 381 aa27.49■■□□□ 1.99
LIG1-216ENST00000598938 MROH1Q8NDA8 1641 aa27.46■■□□□ 1.99
LIG1-216ENST00000598938 KDM5DQ9BY66 1539 aa27.46■■□□□ 1.99
LIG1-216ENST00000598938 CPS1P31327 1500 aa27.45■■□□□ 1.98
LIG1-216ENST00000598938 DEPDC5O75140 1603 aa27.45■■□□□ 1.98
LIG1-216ENST00000598938 HFM1A2PYH4 1435 aa27.44■■□□□ 1.98
LIG1-216ENST00000598938 NAIPQ13075 1403 aa27.44■■□□□ 1.98
LIG1-216ENST00000598938 GCC2Q8IWJ2 1684 aa27.43■■□□□ 1.98
LIG1-216ENST00000598938 PZPP20742 1482 aa27.43■■□□□ 1.98
LIG1-216ENST00000598938 NEURL4Q96JN8 1562 aa27.43■■□□□ 1.98
LIG1-216ENST00000598938 PRDM15P57071 1507 aaPredicted RBP27.42■■□□□ 1.98
LIG1-216ENST00000598938 TNRQ92752 1358 aa27.38■■□□□ 1.97
LIG1-216ENST00000598938 UNC13BO14795 1591 aa27.36■■□□□ 1.97
LIG1-216ENST00000598938 ZC3H13Q5T200 1668 aaKnown RBP27.36■■□□□ 1.97
LIG1-216ENST00000598938 VWDEQ8N2E2 1590 aa27.35■■□□□ 1.97
LIG1-216ENST00000598938 NLRP1Q9C000 1473 aa27.35■■□□□ 1.97
LIG1-216ENST00000598938 ABCC3O15438 1527 aa27.35■■□□□ 1.97
LIG1-216ENST00000598938 WASHC2CQ9Y4E1 1318 aa27.34■■□□□ 1.97
LIG1-216ENST00000598938 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.31■■□□□ 1.961e-10■■■■■ 39.4
LIG1-216ENST00000598938 KANK1Q14678 1352 aa27.31■■□□□ 1.96
LIG1-216ENST00000598938 MED14O60244 1454 aa27.31■■□□□ 1.96
LIG1-216ENST00000598938 TOM1O60784 492 aa27.3■■□□□ 1.96
LIG1-216ENST00000598938 UGGT1Q9NYU2 1555 aa27.3■■□□□ 1.96
LIG1-216ENST00000598938 CEP152O94986 1710 aa27.3■■□□□ 1.96
LIG1-216ENST00000598938 LMTK2Q8IWU2 1503 aa27.29■■□□□ 1.96
LIG1-216ENST00000598938 MED1Q15648 1581 aaPredicted RBP27.29■■□□□ 1.96
LIG1-216ENST00000598938 FBXO31Q5XUX0 539 aaPredicted RBP27.27■■□□□ 1.96
LIG1-216ENST00000598938 ANKLE2Q86XL3 938 aa27.27■■□□□ 1.96
LIG1-216ENST00000598938 THEMISQ8N1K5 641 aaPredicted RBP27.26■■□□□ 1.95
LIG1-216ENST00000598938 SETD5Q9C0A6 1442 aa27.25■■□□□ 1.95
LIG1-216ENST00000598938 IQGAP1P46940 1657 aa27.24■■□□□ 1.95
LIG1-216ENST00000598938 IQGAP3Q86VI3 1631 aa27.24■■□□□ 1.95
LIG1-216ENST00000598938 NPHP4O75161 1426 aaPredicted RBP27.23■■□□□ 1.95
LIG1-216ENST00000598938 HSPA1LP34931 641 aa27.22■■□□□ 1.95
LIG1-216ENST00000598938 TRIM26Q12899 539 aaPredicted RBP27.22■■□□□ 1.95
LIG1-216ENST00000598938 NUP155O75694 1391 aa27.22■■□□□ 1.95
LIG1-216ENST00000598938 ARHGAP31Q2M1Z3 1444 aa27.21■■□□□ 1.95
LIG1-216ENST00000598938 SYNMO15061 1565 aa27.2■■□□□ 1.94
LIG1-216ENST00000598938 SCAF1Q9H7N4 1312 aaKnown RBP27.19■■□□□ 1.94
LIG1-216ENST00000598938 EFCAB6Q5THR3 1501 aa27.19■■□□□ 1.94
LIG1-216ENST00000598938 TET3O43151 1660 aa27.18■■□□□ 1.94
LIG1-216ENST00000598938 ALKQ9UM73 1620 aa27.18■■□□□ 1.94
LIG1-216ENST00000598938 PIP4K2BP78356 416 aa27.17■■□□□ 1.94
LIG1-216ENST00000598938 RAB3GAP2Q9H2M9 1393 aa27.16■■□□□ 1.94
LIG1-216ENST00000598938 STRCP1A6NGW2 1772 aa27.12■■□□□ 1.93
LIG1-216ENST00000598938 ACIN1Q9UKV3 1341 aaKnown RBP27.12■■□□□ 1.93
LIG1-216ENST00000598938 ERVK-7P63135 1459 aa27.12■■□□□ 1.93
LIG1-216ENST00000598938 TRIM52Q96A61 297 aa27.11■■□□□ 1.93
LIG1-216ENST00000598938 RPRD2Q5VT52 1461 aaKnown RBP27.11■■□□□ 1.93
LIG1-216ENST00000598938 UBR1Q8IWV7 1749 aa27.1■■□□□ 1.93
LIG1-216ENST00000598938 E9PCH4 1651 aa27.08■■□□□ 1.93
LIG1-216ENST00000598938 LRRC7Q96NW7 1537 aa27.08■■□□□ 1.93
LIG1-216ENST00000598938 HRCP23327 699 aa27.08■■□□□ 1.93
LIG1-216ENST00000598938 NOS1P29475 1434 aa27.04■■□□□ 1.92
LIG1-216ENST00000598938 SCAF11Q99590 1463 aaKnown RBP27.02■■□□□ 1.92
LIG1-216ENST00000598938 SLIT1O75093 1534 aa27.01■■□□□ 1.91
LIG1-216ENST00000598938 SLC4A1APQ9BWU0 796 aaKnown RBP27.01■■□□□ 1.91
LIG1-216ENST00000598938 CFAP65Q6ZU64 1925 aaKnown RBP27■■□□□ 1.91
LIG1-216ENST00000598938 PHF23Q9BUL5 403 aaPredicted RBP27■■□□□ 1.91
LIG1-216ENST00000598938 ARHGAP23Q9P227 1491 aa27■■□□□ 1.91
LIG1-216ENST00000598938 MPHOSPH9Q99550 1183 aa26.97■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms