RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 CFAP65Q6ZU64 1925 aaKnown RBP16.82■□□□□ 0.28
VRK3-214ENST00000598553 EIF2AK4Q9P2K8 1649 aaKnown RBP16.81■□□□□ 0.28
VRK3-214ENST00000598553 TCOF1Q13428 1488 aaKnown RBP16.81■□□□□ 0.28
VRK3-214ENST00000598553 NCOA1Q15788 1441 aa16.81■□□□□ 0.28
VRK3-214ENST00000598553 FGD6Q6ZV73 1430 aa16.81■□□□□ 0.28
VRK3-214ENST00000598553 RSPH4AQ5TD94 716 aa16.79■□□□□ 0.28
VRK3-214ENST00000598553 FBXO31Q5XUX0 539 aaPredicted RBP16.79■□□□□ 0.28
VRK3-214ENST00000598553 ABCC3O15438 1527 aa16.79■□□□□ 0.28
VRK3-214ENST00000598553 DAPK1P53355 1430 aa16.79■□□□□ 0.28
VRK3-214ENST00000598553 PZPP20742 1482 aa16.78■□□□□ 0.28
VRK3-214ENST00000598553 SHANK2Q9UPX8 1470 aa16.78■□□□□ 0.28
VRK3-214ENST00000598553 ZC3H13Q5T200 1668 aaKnown RBP16.77■□□□□ 0.28
VRK3-214ENST00000598553 TSPY4P0CV99 314 aa16.76■□□□□ 0.27
VRK3-214ENST00000598553 TSPY10P0CW01 314 aa16.76■□□□□ 0.27
VRK3-214ENST00000598553 DUOX2Q9NRD8 1548 aa16.75■□□□□ 0.27
VRK3-214ENST00000598553 FAM135AQ9P2D6 1515 aa16.75■□□□□ 0.27
VRK3-214ENST00000598553 LTBP4Q8N2S1 1624 aa16.75■□□□□ 0.27
VRK3-214ENST00000598553 DEPDC5O75140 1603 aa16.74■□□□□ 0.27
VRK3-214ENST00000598553 POLR1AO95602 1720 aaPredicted RBP16.74■□□□□ 0.27
VRK3-214ENST00000598553 APLP2Q06481 763 aa16.74■□□□□ 0.27
VRK3-214ENST00000598553 A2ML1A8K2U0 1454 aa16.73■□□□□ 0.27
VRK3-214ENST00000598553 NCKAP5LQ9HCH0 1330 aa16.73■□□□□ 0.27
VRK3-214ENST00000598553 NEURL4Q96JN8 1562 aa16.73■□□□□ 0.27
VRK3-214ENST00000598553 PTPRTO14522 1441 aa16.73■□□□□ 0.27
VRK3-214ENST00000598553 FBXO41Q8TF61 875 aa16.73■□□□□ 0.27
VRK3-214ENST00000598553 PRDM15P57071 1507 aaPredicted RBP16.73■□□□□ 0.27
VRK3-214ENST00000598553 KIF15Q9NS87 1388 aa16.73■□□□□ 0.27
VRK3-214ENST00000598553 PPP6R1Q9UPN7 881 aa16.72■□□□□ 0.27
VRK3-214ENST00000598553 CERKQ8TCT0 537 aa16.71■□□□□ 0.27
VRK3-214ENST00000598553 TNRQ92752 1358 aa16.71■□□□□ 0.27
VRK3-214ENST00000598553 PLA2R1Q13018 1463 aa16.71■□□□□ 0.27
VRK3-214ENST00000598553 SPATA31D1Q6ZQQ2 1576 aa16.71■□□□□ 0.27
VRK3-214ENST00000598553 WASHC2CQ9Y4E1 1318 aa16.7■□□□□ 0.26
VRK3-214ENST00000598553 RRP7BPQ9NSQ0 103 aa16.7■□□□□ 0.26
VRK3-214ENST00000598553 CHIC2Q9UKJ5 165 aa16.69■□□□□ 0.26
VRK3-214ENST00000598553 ERVK-7P63135 1459 aa16.68■□□□□ 0.26
VRK3-214ENST00000598553 ERBINQ96RT1 1412 aa16.68■□□□□ 0.26
VRK3-214ENST00000598553 PPARGC1BQ86YN6 1023 aaKnown RBP16.67■□□□□ 0.26
VRK3-214ENST00000598553 UBR1Q8IWV7 1749 aa16.66■□□□□ 0.26
VRK3-214ENST00000598553 VWDEQ8N2E2 1590 aa16.66■□□□□ 0.26
VRK3-214ENST00000598553 ADGRL2O95490 1459 aa16.66■□□□□ 0.26
VRK3-214ENST00000598553 ZNF335Q9H4Z2 1342 aaPredicted RBP16.64■□□□□ 0.25
VRK3-214ENST00000598553 UGGT1Q9NYU2 1555 aa16.64■□□□□ 0.25
VRK3-214ENST00000598553 FAM50AQ14320 339 aaKnown RBP16.63■□□□□ 0.25
VRK3-214ENST00000598553 DMRT2Q9Y5R5 561 aa16.63■□□□□ 0.25
VRK3-214ENST00000598553 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.63■□□□□ 0.25
VRK3-214ENST00000598553 STRCP1A6NGW2 1772 aa16.61■□□□□ 0.25
VRK3-214ENST00000598553 NLRP1Q9C000 1473 aa16.61■□□□□ 0.25
VRK3-214ENST00000598553 PIK3C2BO00750 1634 aa16.61■□□□□ 0.25
VRK3-214ENST00000598553 SYNMO15061 1565 aa16.6■□□□□ 0.25
VRK3-214ENST00000598553 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.6■□□□□ 0.25
VRK3-214ENST00000598553 ANKRD30AQ9BXX3 1397 aa16.6■□□□□ 0.25
VRK3-214ENST00000598553 IQGAP1P46940 1657 aa16.59■□□□□ 0.25
VRK3-214ENST00000598553 LMTK2Q8IWU2 1503 aa16.58■□□□□ 0.24
VRK3-214ENST00000598553 MYO5BQ9ULV0 1848 aa16.57■□□□□ 0.24
VRK3-214ENST00000598553 EFCAB6Q5THR3 1501 aa16.57■□□□□ 0.24
VRK3-214ENST00000598553 ARHGAP31Q2M1Z3 1444 aa16.57■□□□□ 0.24
VRK3-214ENST00000598553 PKD2Q13563 968 aa16.57■□□□□ 0.24
VRK3-214ENST00000598553 UNC13BO14795 1591 aa16.56■□□□□ 0.24
VRK3-214ENST00000598553 ANKRD50Q9ULJ7 1429 aa16.54■□□□□ 0.24
VRK3-214ENST00000598553 TET3O43151 1660 aa16.53■□□□□ 0.24
VRK3-214ENST00000598553 MED14O60244 1454 aa16.53■□□□□ 0.24
VRK3-214ENST00000598553 NPHP4O75161 1426 aaPredicted RBP16.53■□□□□ 0.24
VRK3-214ENST00000598553 E9PCH4 1651 aa16.53■□□□□ 0.24
VRK3-214ENST00000598553 GCC2Q8IWJ2 1684 aa16.53■□□□□ 0.24
VRK3-214ENST00000598553 ARHGAP23Q9P227 1491 aa16.51■□□□□ 0.23
VRK3-214ENST00000598553 IQSEC2Q5JU85 1478 aa16.5■□□□□ 0.23
VRK3-214ENST00000598553 NOS1P29475 1434 aa16.5■□□□□ 0.23
VRK3-214ENST00000598553 SLIT1O75093 1534 aa16.5■□□□□ 0.23
VRK3-214ENST00000598553 ALKQ9UM73 1620 aa16.49■□□□□ 0.23
VRK3-214ENST00000598553 XIRP1Q702N8 1843 aaKnown RBP16.49■□□□□ 0.23
VRK3-214ENST00000598553 KANK1Q14678 1352 aa16.49■□□□□ 0.23
VRK3-214ENST00000598553 IQGAP3Q86VI3 1631 aa16.48■□□□□ 0.23
VRK3-214ENST00000598553 ITGAEP38570 1179 aa16.48■□□□□ 0.23
VRK3-214ENST00000598553 THEMISQ8N1K5 641 aaPredicted RBP16.48■□□□□ 0.23
VRK3-214ENST00000598553 KDM5AP29375 1690 aaKnown RBP16.48■□□□□ 0.23
VRK3-214ENST00000598553 LTKP29376 864 aa16.47■□□□□ 0.23
VRK3-214ENST00000598553 ANKLE2Q86XL3 938 aa16.47■□□□□ 0.23
VRK3-214ENST00000598553 SCAF11Q99590 1463 aaKnown RBP16.47■□□□□ 0.23
VRK3-214ENST00000598553 ADGRB3O60242 1522 aa16.46■□□□□ 0.23
VRK3-214ENST00000598553 ROCK1Q13464 1354 aa16.45■□□□□ 0.22
VRK3-214ENST00000598553 CPS1P31327 1500 aa16.45■□□□□ 0.22
VRK3-214ENST00000598553 IDI1Q13907 227 aa16.44■□□□□ 0.22
VRK3-214ENST00000598553 RRBP1Q9P2E9 1410 aaKnown RBP16.44■□□□□ 0.22
VRK3-214ENST00000598553 TMEM131LA2VDJ0 1609 aa16.42■□□□□ 0.22
VRK3-214ENST00000598553 TMEM2Q9UHN6 1383 aa16.41■□□□□ 0.22
VRK3-214ENST00000598553 RPRD2Q5VT52 1461 aaKnown RBP16.41■□□□□ 0.22
VRK3-214ENST00000598553 LRRC7Q96NW7 1537 aa16.4■□□□□ 0.22
VRK3-214ENST00000598553 TXNDC2Q86VQ3 553 aa16.39■□□□□ 0.21
VRK3-214ENST00000598553 UBAP1LF5GYI3 381 aa16.38■□□□□ 0.21
VRK3-214ENST00000598553 SENP3Q9H4L4 574 aaPredicted RBP16.38■□□□□ 0.21
VRK3-214ENST00000598553 SPHKAPQ2M3C7 1700 aa16.38■□□□□ 0.21
VRK3-214ENST00000598553 ZFYVE9O95405 1425 aa16.36■□□□□ 0.21
VRK3-214ENST00000598553 NAIPQ13075 1403 aa16.35■□□□□ 0.21
VRK3-214ENST00000598553 NUP155O75694 1391 aa16.34■□□□□ 0.21
VRK3-214ENST00000598553 STAG3Q9UJ98 1225 aa16.33■□□□□ 0.2
VRK3-214ENST00000598553 NWD1Q149M9 1564 aa16.32■□□□□ 0.2
VRK3-214ENST00000598553 CLTCL1P53675 1640 aa16.31■□□□□ 0.2
VRK3-214ENST00000598553 CHD2O14647 1828 aaKnown RBP16.31■□□□□ 0.2
VRK3-214ENST00000598553 RIMS2Q9UQ26 1411 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms