RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 DEPDC5O75140 1603 aa18.77■□□□□ 0.6
SHKBP1-213ENST00000597325 LRRIQ1Q96JM4 1722 aa18.77■□□□□ 0.59
SHKBP1-213ENST00000597325 TIAM1Q13009 1591 aa18.76■□□□□ 0.59
SHKBP1-213ENST00000597325 SYNMO15061 1565 aa18.76■□□□□ 0.59
SHKBP1-213ENST00000597325 MAP3K1Q13233 1512 aa18.75■□□□□ 0.59
SHKBP1-213ENST00000597325 ANKLE2Q86XL3 938 aa18.75■□□□□ 0.59
SHKBP1-213ENST00000597325 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.75■□□□□ 0.59
SHKBP1-213ENST00000597325 NPHP4O75161 1426 aaPredicted RBP18.74■□□□□ 0.59
SHKBP1-213ENST00000597325 A2MP01023 1474 aa18.74■□□□□ 0.59
SHKBP1-213ENST00000597325 GGT6Q6P531 493 aa18.74■□□□□ 0.59
SHKBP1-213ENST00000597325 ATP7AQ04656 1500 aa18.73■□□□□ 0.59
SHKBP1-213ENST00000597325 SPAG9O60271 1321 aaKnown RBP18.73■□□□□ 0.59
SHKBP1-213ENST00000597325 CDC42BPAQ5VT25 1732 aa18.72■□□□□ 0.59
SHKBP1-213ENST00000597325 IQGAP1P46940 1657 aa18.72■□□□□ 0.59
SHKBP1-213ENST00000597325 INO80Q9ULG1 1556 aaPredicted RBP18.72■□□□□ 0.59
SHKBP1-213ENST00000597325 TNRQ92752 1358 aa18.71■□□□□ 0.59
SHKBP1-213ENST00000597325 UPF1Q92900 1129 aaKnown RBP eCLIP18.71■□□□□ 0.59
SHKBP1-213ENST00000597325 SYCP2Q9BX26 1530 aa18.7■□□□□ 0.58
SHKBP1-213ENST00000597325 FBXO31Q5XUX0 539 aaPredicted RBP18.69■□□□□ 0.58
SHKBP1-213ENST00000597325 FAM135BQ49AJ0 1406 aa18.67■□□□□ 0.58
SHKBP1-213ENST00000597325 THEMISQ8N1K5 641 aaPredicted RBP18.67■□□□□ 0.58
SHKBP1-213ENST00000597325 EHBP1L1Q8N3D4 1523 aa18.66■□□□□ 0.58
SHKBP1-213ENST00000597325 XIRP1Q702N8 1843 aaKnown RBP18.66■□□□□ 0.58
SHKBP1-213ENST00000597325 PZPP20742 1482 aa18.65■□□□□ 0.58
SHKBP1-213ENST00000597325 UGGT1Q9NYU2 1555 aa18.65■□□□□ 0.58
SHKBP1-213ENST00000597325 MTUS2Q5JR59 1369 aa18.65■□□□□ 0.58
SHKBP1-213ENST00000597325 LRRC9Q6ZRR7 1453 aa18.65■□□□□ 0.58
SHKBP1-213ENST00000597325 HNRNPMP52272 730 aaKnown RBP eCLIP18.64■□□□□ 0.57
SHKBP1-213ENST00000597325 NLRP1Q9C000 1473 aa18.63■□□□□ 0.57
SHKBP1-213ENST00000597325 FAM135AQ9P2D6 1515 aa18.62■□□□□ 0.57
SHKBP1-213ENST00000597325 ZC3H13Q5T200 1668 aaKnown RBP18.62■□□□□ 0.57
SHKBP1-213ENST00000597325 ADGBQ8N7X0 1667 aa18.62■□□□□ 0.57
SHKBP1-213ENST00000597325 MIA2Q96PC5 1412 aa18.61■□□□□ 0.57
SHKBP1-213ENST00000597325 KIAA1107Q9UPP5 1409 aa18.61■□□□□ 0.57
SHKBP1-213ENST00000597325 ZNF777Q9ULD5 760 aaPredicted RBP18.59■□□□□ 0.57
SHKBP1-213ENST00000597325 KANK4Q5T7N3 995 aaPredicted RBP18.58■□□□□ 0.56
SHKBP1-213ENST00000597325 PPARGC1BQ86YN6 1023 aaKnown RBP18.58■□□□□ 0.56
SHKBP1-213ENST00000597325 GPATCH8Q9UKJ3 1502 aaKnown RBP18.58■□□□□ 0.56
SHKBP1-213ENST00000597325 KDM5DQ9BY66 1539 aa18.56■□□□□ 0.56
SHKBP1-213ENST00000597325 ROBO1Q9Y6N7 1651 aa18.55■□□□□ 0.56
SHKBP1-213ENST00000597325 PLEKHH2Q8IVE3 1493 aa18.53■□□□□ 0.56
SHKBP1-213ENST00000597325 DHX29Q7Z478 1369 aaKnown RBP18.52■□□□□ 0.55
SHKBP1-213ENST00000597325 NCOA2Q15596 1464 aa18.51■□□□□ 0.55
SHKBP1-213ENST00000597325 TRIM52Q96A61 297 aa18.47■□□□□ 0.55
SHKBP1-213ENST00000597325 RTEL1-TNFRSF6BF6WH68 1400 aa18.47■□□□□ 0.55
SHKBP1-213ENST00000597325 WASHC2CQ9Y4E1 1318 aa18.47■□□□□ 0.55
SHKBP1-213ENST00000597325 JCADQ9P266 1359 aa18.46■□□□□ 0.55
SHKBP1-213ENST00000597325 SCAF11Q99590 1463 aaKnown RBP18.46■□□□□ 0.54
SHKBP1-213ENST00000597325 KIF3BO15066 747 aa18.45■□□□□ 0.54
SHKBP1-213ENST00000597325 MBD5Q9P267 1494 aa18.45■□□□□ 0.54
SHKBP1-213ENST00000597325 LRP6O75581 1613 aa18.45■□□□□ 0.54
SHKBP1-213ENST00000597325 CFDP1Q9UEE9 299 aaPredicted RBP18.44■□□□□ 0.54
SHKBP1-213ENST00000597325 TMEM94Q12767 1356 aa18.43■□□□□ 0.54
SHKBP1-213ENST00000597325 CCNB3Q8WWL7 1395 aa18.43■□□□□ 0.54
SHKBP1-213ENST00000597325 UBR1Q8IWV7 1749 aa18.43■□□□□ 0.54
SHKBP1-213ENST00000597325 LTKP29376 864 aa18.43■□□□□ 0.54
SHKBP1-213ENST00000597325 PHLPP1O60346 1717 aa18.43■□□□□ 0.54
SHKBP1-213ENST00000597325 CDK12Q9NYV4 1490 aaPredicted RBP18.42■□□□□ 0.54
SHKBP1-213ENST00000597325 ARHGAP23Q9P227 1491 aa18.42■□□□□ 0.54
SHKBP1-213ENST00000597325 ZNF772Q68DY9 489 aaPredicted RBP18.42■□□□□ 0.54
SHKBP1-213ENST00000597325 MYOM3Q5VTT5 1437 aa18.41■□□□□ 0.54
SHKBP1-213ENST00000597325 SLIT1O75093 1534 aa18.41■□□□□ 0.54
SHKBP1-213ENST00000597325 COL16A1Q07092 1604 aaPredicted RBP18.39■□□□□ 0.53
SHKBP1-213ENST00000597325 ZNF644Q9H582 1327 aaPredicted RBP18.38■□□□□ 0.53
SHKBP1-213ENST00000597325 ERVK-7P63135 1459 aa18.38■□□□□ 0.53
SHKBP1-213ENST00000597325 EP400Q96L91 3159 aa18.38■□□□□ 0.53
SHKBP1-213ENST00000597325 RXRBP28702 533 aa18.36■□□□□ 0.53
SHKBP1-213ENST00000597325 SPATA31A6Q5VVP1 1343 aa18.36■□□□□ 0.53
SHKBP1-213ENST00000597325 FGD6Q6ZV73 1430 aa18.36■□□□□ 0.53
SHKBP1-213ENST00000597325 TXNDC2Q86VQ3 553 aa18.35■□□□□ 0.53
SHKBP1-213ENST00000597325 ABCC3O15438 1527 aa18.33■□□□□ 0.53
SHKBP1-213ENST00000597325 RRBP1Q9P2E9 1410 aaKnown RBP18.33■□□□□ 0.53
SHKBP1-213ENST00000597325 PTPN23Q9H3S7 1636 aa18.33■□□□□ 0.52
SHKBP1-213ENST00000597325 PRDM15P57071 1507 aaPredicted RBP18.33■□□□□ 0.52
SHKBP1-213ENST00000597325 KCNA6P17658 529 aa18.32■□□□□ 0.52
SHKBP1-213ENST00000597325 RBM33Q96EV2 1170 aaKnown RBP18.32■□□□□ 0.52
SHKBP1-213ENST00000597325 SLAIN2Q9P270 581 aa18.32■□□□□ 0.52
SHKBP1-213ENST00000597325 MEX3CQ5U5Q3 659 aaKnown RBP18.3■□□□□ 0.52
SHKBP1-213ENST00000597325 SHPRHQ149N8 1683 aa18.29■□□□□ 0.52
SHKBP1-213ENST00000597325 TRIM26Q12899 539 aaPredicted RBP18.29■□□□□ 0.52
SHKBP1-213ENST00000597325 PROSER2Q86WR7 435 aaPredicted RBP18.29■□□□□ 0.52
SHKBP1-213ENST00000597325 NKTRP30414 1462 aaKnown RBP18.27■□□□□ 0.52
SHKBP1-213ENST00000597325 CAMSAP2Q08AD1 1489 aa18.27■□□□□ 0.52
SHKBP1-213ENST00000597325 NWD1Q149M9 1564 aa18.27■□□□□ 0.52
SHKBP1-213ENST00000597325 FAM50AQ14320 339 aaKnown RBP18.27■□□□□ 0.52
SHKBP1-213ENST00000597325 TET3O43151 1660 aa18.27■□□□□ 0.52
SHKBP1-213ENST00000597325 SETBP1Q9Y6X0 1596 aa18.26■□□□□ 0.51
SHKBP1-213ENST00000597325 RGS12O14924 1447 aa18.26■□□□□ 0.51
SHKBP1-213ENST00000597325 EID1Q9Y6B2 187 aa18.26■□□□□ 0.51
SHKBP1-213ENST00000597325 MSH6P52701 1360 aa18.26■□□□□ 0.51
SHKBP1-213ENST00000597325 CCDC141Q6ZP82 1450 aa18.26■□□□□ 0.51
SHKBP1-213ENST00000597325 CFAP65Q6ZU64 1925 aaKnown RBP18.25■□□□□ 0.51
SHKBP1-213ENST00000597325 TMEM2Q9UHN6 1383 aa18.24■□□□□ 0.51
SHKBP1-213ENST00000597325 AHDC1Q5TGY3 1603 aaPredicted RBP18.23■□□□□ 0.51
SHKBP1-213ENST00000597325 MROH1Q8NDA8 1641 aa18.23■□□□□ 0.51
SHKBP1-213ENST00000597325 ZRANB1Q9UGI0 708 aa18.21■□□□□ 0.51
SHKBP1-213ENST00000597325 AFF2P51816 1311 aa18.21■□□□□ 0.51
SHKBP1-213ENST00000597325 KDM5AP29375 1690 aaKnown RBP18.2■□□□□ 0.5
SHKBP1-213ENST00000597325 DIP2AQ14689 1571 aa18.2■□□□□ 0.5
SHKBP1-213ENST00000597325 PIK3C2BO00750 1634 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms