RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 CEP170BQ9Y4F5 1589 aaPredicted RBP20.56■□□□□ 0.88
LIG1-212ENST00000596549 FGD6Q6ZV73 1430 aa20.56■□□□□ 0.88
LIG1-212ENST00000596549 GGT6Q6P531 493 aa20.56■□□□□ 0.88
LIG1-212ENST00000596549 CEP152O94986 1710 aa20.56■□□□□ 0.88
LIG1-212ENST00000596549 CAMSAP1Q5T5Y3 1602 aa20.53■□□□□ 0.88
LIG1-212ENST00000596549 ABCC5O15440 1437 aa20.53■□□□□ 0.88
LIG1-212ENST00000596549 DUOX2Q9NRD8 1548 aa20.52■□□□□ 0.87
LIG1-212ENST00000596549 DAPK1P53355 1430 aa20.52■□□□□ 0.87
LIG1-212ENST00000596549 APLP2Q06481 763 aa20.51■□□□□ 0.87
LIG1-212ENST00000596549 PZPP20742 1482 aa20.5■□□□□ 0.87
LIG1-212ENST00000596549 DEPDC5O75140 1603 aa20.5■□□□□ 0.87
LIG1-212ENST00000596549 ABCC3O15438 1527 aa20.5■□□□□ 0.87
LIG1-212ENST00000596549 KIF3BO15066 747 aa20.5■□□□□ 0.87
LIG1-212ENST00000596549 TSPY4P0CV99 314 aa20.5■□□□□ 0.87
LIG1-212ENST00000596549 TSPY10P0CW01 314 aa20.5■□□□□ 0.87
LIG1-212ENST00000596549 NCOA1Q15788 1441 aa20.5■□□□□ 0.87
LIG1-212ENST00000596549 PRDM15P57071 1507 aaPredicted RBP20.49■□□□□ 0.87
LIG1-212ENST00000596549 PPP6R1Q9UPN7 881 aa20.48■□□□□ 0.87
LIG1-212ENST00000596549 POLR1AO95602 1720 aaPredicted RBP20.47■□□□□ 0.87
LIG1-212ENST00000596549 ERBINQ96RT1 1412 aa20.44■□□□□ 0.86
LIG1-212ENST00000596549 PLA2R1Q13018 1463 aa20.43■□□□□ 0.86
LIG1-212ENST00000596549 SPATA31D1Q6ZQQ2 1576 aa20.43■□□□□ 0.86
LIG1-212ENST00000596549 KIF15Q9NS87 1388 aa20.43■□□□□ 0.86
LIG1-212ENST00000596549 PTPRTO14522 1441 aa20.43■□□□□ 0.86
LIG1-212ENST00000596549 A2ML1A8K2U0 1454 aa20.43■□□□□ 0.86
LIG1-212ENST00000596549 ADGRL2O95490 1459 aa20.4■□□□□ 0.86
LIG1-212ENST00000596549 NEURL4Q96JN8 1562 aa20.38■□□□□ 0.85
LIG1-212ENST00000596549 TNRQ92752 1358 aa20.38■□□□□ 0.85
LIG1-212ENST00000596549 WASHC2CQ9Y4E1 1318 aa20.38■□□□□ 0.85
LIG1-212ENST00000596549 LTBP4Q8N2S1 1624 aa20.38■□□□□ 0.85
LIG1-212ENST00000596549 CFAP65Q6ZU64 1925 aaKnown RBP20.37■□□□□ 0.85
LIG1-212ENST00000596549 VWDEQ8N2E2 1590 aa20.37■□□□□ 0.85
LIG1-212ENST00000596549 ERVK-7P63135 1459 aa20.37■□□□□ 0.85
LIG1-212ENST00000596549 FBXO31Q5XUX0 539 aaPredicted RBP20.36■□□□□ 0.85
LIG1-212ENST00000596549 FBXO41Q8TF61 875 aa20.35■□□□□ 0.85
LIG1-212ENST00000596549 NLRP1Q9C000 1473 aa20.34■□□□□ 0.85
LIG1-212ENST00000596549 UBR1Q8IWV7 1749 aa20.33■□□□□ 0.85
LIG1-212ENST00000596549 UGGT1Q9NYU2 1555 aa20.33■□□□□ 0.84
LIG1-212ENST00000596549 RRP7BPQ9NSQ0 103 aa20.32■□□□□ 0.84
LIG1-212ENST00000596549 DMRT2Q9Y5R5 561 aa20.32■□□□□ 0.84
LIG1-212ENST00000596549 ANKRD30AQ9BXX3 1397 aa20.32■□□□□ 0.84
LIG1-212ENST00000596549 LMTK2Q8IWU2 1503 aa20.31■□□□□ 0.84
LIG1-212ENST00000596549 NCKAP5LQ9HCH0 1330 aa20.29■□□□□ 0.84
LIG1-212ENST00000596549 CERKQ8TCT0 537 aa20.29■□□□□ 0.84
LIG1-212ENST00000596549 UNC13BO14795 1591 aa20.29■□□□□ 0.84
LIG1-212ENST00000596549 ARHGAP31Q2M1Z3 1444 aa20.28■□□□□ 0.84
LIG1-212ENST00000596549 EFCAB6Q5THR3 1501 aa20.28■□□□□ 0.84
LIG1-212ENST00000596549 CHIC2Q9UKJ5 165 aa20.28■□□□□ 0.84
LIG1-212ENST00000596549 PIK3C2BO00750 1634 aa20.27■□□□□ 0.83
LIG1-212ENST00000596549 FAM50AQ14320 339 aaKnown RBP20.26■□□□□ 0.83
LIG1-212ENST00000596549 IQGAP1P46940 1657 aa20.26■□□□□ 0.83
LIG1-212ENST00000596549 SYNMO15061 1565 aa20.25■□□□□ 0.83
LIG1-212ENST00000596549 GCC2Q8IWJ2 1684 aa20.25■□□□□ 0.83
LIG1-212ENST00000596549 TET3O43151 1660 aa20.23■□□□□ 0.83
LIG1-212ENST00000596549 KDM5AP29375 1690 aaKnown RBP20.23■□□□□ 0.83
LIG1-212ENST00000596549 PKD2Q13563 968 aa20.23■□□□□ 0.83
LIG1-212ENST00000596549 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.22■□□□□ 0.83
LIG1-212ENST00000596549 ANKRD50Q9ULJ7 1429 aa20.22■□□□□ 0.83
LIG1-212ENST00000596549 IQSEC2Q5JU85 1478 aa20.22■□□□□ 0.83
LIG1-212ENST00000596549 MED14O60244 1454 aa20.2■□□□□ 0.82
LIG1-212ENST00000596549 ZNF335Q9H4Z2 1342 aaPredicted RBP20.19■□□□□ 0.82
LIG1-212ENST00000596549 IQGAP3Q86VI3 1631 aa20.19■□□□□ 0.82
LIG1-212ENST00000596549 KANK1Q14678 1352 aa20.19■□□□□ 0.82
LIG1-212ENST00000596549 PPARGC1BQ86YN6 1023 aaKnown RBP20.18■□□□□ 0.82
LIG1-212ENST00000596549 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.18■□□□□ 0.822e-7■■■■■ 31
LIG1-212ENST00000596549 E9PCH4 1651 aa20.18■□□□□ 0.82
LIG1-212ENST00000596549 STRCP1A6NGW2 1772 aa20.18■□□□□ 0.82
LIG1-212ENST00000596549 SLIT1O75093 1534 aa20.17■□□□□ 0.82
LIG1-212ENST00000596549 ROCK1Q13464 1354 aa20.17■□□□□ 0.82
LIG1-212ENST00000596549 MYO5BQ9ULV0 1848 aa20.16■□□□□ 0.82
LIG1-212ENST00000596549 ARHGAP23Q9P227 1491 aa20.16■□□□□ 0.82
LIG1-212ENST00000596549 NOS1P29475 1434 aa20.15■□□□□ 0.82
LIG1-212ENST00000596549 ADGRB3O60242 1522 aa20.14■□□□□ 0.81
LIG1-212ENST00000596549 NPHP4O75161 1426 aaPredicted RBP20.14■□□□□ 0.81
LIG1-212ENST00000596549 RPRD2Q5VT52 1461 aaKnown RBP20.13■□□□□ 0.81
LIG1-212ENST00000596549 RRBP1Q9P2E9 1410 aaKnown RBP20.13■□□□□ 0.81
LIG1-212ENST00000596549 THEMISQ8N1K5 641 aaPredicted RBP20.12■□□□□ 0.81
LIG1-212ENST00000596549 CPS1P31327 1500 aa20.11■□□□□ 0.81
LIG1-212ENST00000596549 SCAF11Q99590 1463 aaKnown RBP20.11■□□□□ 0.81
LIG1-212ENST00000596549 ANKLE2Q86XL3 938 aa20.09■□□□□ 0.81
LIG1-212ENST00000596549 TMEM131LA2VDJ0 1609 aa20.05■□□□□ 0.8
LIG1-212ENST00000596549 XIRP1Q702N8 1843 aaKnown RBP20.05■□□□□ 0.8
LIG1-212ENST00000596549 SPHKAPQ2M3C7 1700 aa20.05■□□□□ 0.8
LIG1-212ENST00000596549 ITGAEP38570 1179 aa20.03■□□□□ 0.8
LIG1-212ENST00000596549 TMEM2Q9UHN6 1383 aa20.03■□□□□ 0.8
LIG1-212ENST00000596549 ALKQ9UM73 1620 aa20.02■□□□□ 0.8
LIG1-212ENST00000596549 LTKP29376 864 aa20■□□□□ 0.79
LIG1-212ENST00000596549 IDI1Q13907 227 aa20■□□□□ 0.79
LIG1-212ENST00000596549 LRRC7Q96NW7 1537 aa19.97■□□□□ 0.79
LIG1-212ENST00000596549 NAIPQ13075 1403 aa19.97■□□□□ 0.79
LIG1-212ENST00000596549 ZFYVE9O95405 1425 aa19.96■□□□□ 0.79
LIG1-212ENST00000596549 NWD1Q149M9 1564 aa19.95■□□□□ 0.78
LIG1-212ENST00000596549 TXNDC2Q86VQ3 553 aa19.94■□□□□ 0.78
LIG1-212ENST00000596549 NUP155O75694 1391 aa19.94■□□□□ 0.78
LIG1-212ENST00000596549 SLC52A1Q9NWF4 448 aa19.92■□□□□ 0.78
LIG1-212ENST00000596549 STAG3Q9UJ98 1225 aa19.92■□□□□ 0.78
LIG1-212ENST00000596549 CLTCL1P53675 1640 aa19.91■□□□□ 0.78
LIG1-212ENST00000596549 UBAP1LF5GYI3 381 aa19.91■□□□□ 0.78
LIG1-212ENST00000596549 HFM1A2PYH4 1435 aa19.91■□□□□ 0.78
LIG1-212ENST00000596549 EID1Q9Y6B2 187 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms