RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 SHANK2Q9UPX8 1470 aa23.56■■□□□ 1.36
TRIM28-205ENST00000595028 TSPY4P0CV99 314 aa23.56■■□□□ 1.36
TRIM28-205ENST00000595028 TSPY10P0CW01 314 aa23.56■■□□□ 1.36
TRIM28-205ENST00000595028 DNMT1P26358 1616 aaKnown RBP23.55■■□□□ 1.36
TRIM28-205ENST00000595028 UBAP1LF5GYI3 381 aa23.52■■□□□ 1.36
TRIM28-205ENST00000595028 FAM135AQ9P2D6 1515 aa23.52■■□□□ 1.36
TRIM28-205ENST00000595028 CAMSAP1Q5T5Y3 1602 aa23.51■■□□□ 1.35
TRIM28-205ENST00000595028 EIF2AK4Q9P2K8 1649 aaKnown RBP23.51■■□□□ 1.35
TRIM28-205ENST00000595028 ABCC5O15440 1437 aa23.5■■□□□ 1.35
TRIM28-205ENST00000595028 DAPK1P53355 1430 aa23.5■■□□□ 1.35
TRIM28-205ENST00000595028 RNF17Q9BXT8 1623 aaKnown RBP23.49■■□□□ 1.35
TRIM28-205ENST00000595028 GGT6Q6P531 493 aa23.49■■□□□ 1.35
TRIM28-205ENST00000595028 ZNF335Q9H4Z2 1342 aaPredicted RBP23.49■■□□□ 1.35
TRIM28-205ENST00000595028 PPP6R1Q9UPN7 881 aa23.47■■□□□ 1.35
TRIM28-205ENST00000595028 ZMYM3Q14202 1370 aa23.47■■□□□ 1.35
TRIM28-205ENST00000595028 NPATQ14207 1427 aa23.47■■□□□ 1.35
TRIM28-205ENST00000595028 KDM5DQ9BY66 1539 aa23.47■■□□□ 1.35
TRIM28-205ENST00000595028 DUOX2Q9NRD8 1548 aa23.46■■□□□ 1.35
TRIM28-205ENST00000595028 NCKAP5LQ9HCH0 1330 aa23.45■■□□□ 1.34
TRIM28-205ENST00000595028 KIF3BO15066 747 aa23.45■■□□□ 1.34
TRIM28-205ENST00000595028 PTPRKQ15262 1439 aa23.42■■□□□ 1.34
TRIM28-205ENST00000595028 ZC3H13Q5T200 1668 aaKnown RBP23.41■■□□□ 1.34
TRIM28-205ENST00000595028 KIF15Q9NS87 1388 aa23.41■■□□□ 1.34
TRIM28-205ENST00000595028 MROH1Q8NDA8 1641 aa23.41■■□□□ 1.34
TRIM28-205ENST00000595028 MYO3AQ8NEV4 1616 aa23.41■■□□□ 1.34
TRIM28-205ENST00000595028 ZNF142P52746 1687 aaPredicted RBP23.39■■□□□ 1.34
TRIM28-205ENST00000595028 ERBINQ96RT1 1412 aa23.39■■□□□ 1.33
TRIM28-205ENST00000595028 MED1Q15648 1581 aaPredicted RBP23.39■■□□□ 1.33
TRIM28-205ENST00000595028 ADGRL2O95490 1459 aa23.36■■□□□ 1.33
TRIM28-205ENST00000595028 ABCC3O15438 1527 aa23.36■■□□□ 1.33
TRIM28-205ENST00000595028 PZPP20742 1482 aa23.36■■□□□ 1.33
TRIM28-205ENST00000595028 PRDM15P57071 1507 aaPredicted RBP23.35■■□□□ 1.33
TRIM28-205ENST00000595028 DEPDC5O75140 1603 aa23.34■■□□□ 1.33
TRIM28-205ENST00000595028 CEP152O94986 1710 aa23.34■■□□□ 1.33
TRIM28-205ENST00000595028 FAM50AQ14320 339 aaKnown RBP23.34■■□□□ 1.33
TRIM28-205ENST00000595028 ANKRD30AQ9BXX3 1397 aa23.34■■□□□ 1.33
TRIM28-205ENST00000595028 PLA2R1Q13018 1463 aa23.34■■□□□ 1.33
TRIM28-205ENST00000595028 CEP170BQ9Y4F5 1589 aaPredicted RBP23.33■■□□□ 1.33
TRIM28-205ENST00000595028 HSPA1LP34931 641 aa23.33■■□□□ 1.33
TRIM28-205ENST00000595028 PKD2Q13563 968 aa23.33■■□□□ 1.33
TRIM28-205ENST00000595028 WASHC2CQ9Y4E1 1318 aa23.33■■□□□ 1.32
TRIM28-205ENST00000595028 RRP7BPQ9NSQ0 103 aa23.31■■□□□ 1.32
TRIM28-205ENST00000595028 SCAF1Q9H7N4 1312 aaKnown RBP23.3■■□□□ 1.32
TRIM28-205ENST00000595028 CHIC2Q9UKJ5 165 aa23.29■■□□□ 1.32
TRIM28-205ENST00000595028 PIP4K2BP78356 416 aa23.27■■□□□ 1.32
TRIM28-205ENST00000595028 PPARGC1BQ86YN6 1023 aaKnown RBP23.26■■□□□ 1.31
TRIM28-205ENST00000595028 TNRQ92752 1358 aa23.26■■□□□ 1.31
TRIM28-205ENST00000595028 A2ML1A8K2U0 1454 aa23.24■■□□□ 1.31
TRIM28-205ENST00000595028 FBXO31Q5XUX0 539 aaPredicted RBP23.23■■□□□ 1.31
TRIM28-205ENST00000595028 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.23■■□□□ 1.31
TRIM28-205ENST00000595028 VWDEQ8N2E2 1590 aa23.22■■□□□ 1.31
TRIM28-205ENST00000595028 TOM1O60784 492 aa23.21■■□□□ 1.31
TRIM28-205ENST00000595028 ERVK-7P63135 1459 aa23.21■■□□□ 1.31
TRIM28-205ENST00000595028 LMTK2Q8IWU2 1503 aa23.19■■□□□ 1.3
TRIM28-205ENST00000595028 NLRP1Q9C000 1473 aa23.19■■□□□ 1.3
TRIM28-205ENST00000595028 ANKRD50Q9ULJ7 1429 aa23.19■■□□□ 1.3
TRIM28-205ENST00000595028 PHF23Q9BUL5 403 aaPredicted RBP23.19■■□□□ 1.3
TRIM28-205ENST00000595028 RRBP1Q9P2E9 1410 aaKnown RBP23.18■■□□□ 1.3
TRIM28-205ENST00000595028 ROCK1Q13464 1354 aa23.18■■□□□ 1.3
TRIM28-205ENST00000595028 ARHGAP31Q2M1Z3 1444 aa23.17■■□□□ 1.3
TRIM28-205ENST00000595028 KANK1Q14678 1352 aa23.17■■□□□ 1.3
TRIM28-205ENST00000595028 CPS1P31327 1500 aa23.17■■□□□ 1.3
TRIM28-205ENST00000595028 CFAP65Q6ZU64 1925 aaKnown RBP23.16■■□□□ 1.3
TRIM28-205ENST00000595028 UNC13BO14795 1591 aa23.15■■□□□ 1.3
TRIM28-205ENST00000595028 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.14■■□□□ 1.29
TRIM28-205ENST00000595028 POLR1AO95602 1720 aaPredicted RBP23.13■■□□□ 1.29
TRIM28-205ENST00000595028 EFCAB6Q5THR3 1501 aa23.13■■□□□ 1.29
TRIM28-205ENST00000595028 NEURL4Q96JN8 1562 aa23.12■■□□□ 1.29
TRIM28-205ENST00000595028 UGGT1Q9NYU2 1555 aa23.12■■□□□ 1.29
TRIM28-205ENST00000595028 ALKQ9UM73 1620 aa23.09■■□□□ 1.29
TRIM28-205ENST00000595028 ITGAEP38570 1179 aa23.08■■□□□ 1.29
TRIM28-205ENST00000595028 TET3O43151 1660 aa23.08■■□□□ 1.29
TRIM28-205ENST00000595028 UBR1Q8IWV7 1749 aa23.07■■□□□ 1.28
TRIM28-205ENST00000595028 GCC2Q8IWJ2 1684 aa23.06■■□□□ 1.28
TRIM28-205ENST00000595028 IQGAP3Q86VI3 1631 aa23.04■■□□□ 1.28
TRIM28-205ENST00000595028 SYNMO15061 1565 aa23.04■■□□□ 1.28
TRIM28-205ENST00000595028 RPRD2Q5VT52 1461 aaKnown RBP23.03■■□□□ 1.28
TRIM28-205ENST00000595028 PIK3C2BO00750 1634 aa23.02■■□□□ 1.28
TRIM28-205ENST00000595028 THEMISQ8N1K5 641 aaPredicted RBP23.01■■□□□ 1.27
TRIM28-205ENST00000595028 SENP3Q9H4L4 574 aaPredicted RBP23.01■■□□□ 1.27
TRIM28-205ENST00000595028 NOS1P29475 1434 aa23■■□□□ 1.27
TRIM28-205ENST00000595028 KDM5AP29375 1690 aaKnown RBP23■■□□□ 1.27
TRIM28-205ENST00000595028 E9PCH4 1651 aa22.97■■□□□ 1.27
TRIM28-205ENST00000595028 ANKLE2Q86XL3 938 aa22.97■■□□□ 1.27
TRIM28-205ENST00000595028 MED14O60244 1454 aa22.96■■□□□ 1.27
TRIM28-205ENST00000595028 IQGAP1P46940 1657 aa22.96■■□□□ 1.27
TRIM28-205ENST00000595028 SLIT1O75093 1534 aa22.95■■□□□ 1.26
TRIM28-205ENST00000595028 RGS17Q9UGC6 210 aaPredicted RBP22.95■■□□□ 1.26
TRIM28-205ENST00000595028 ADGRB3O60242 1522 aa22.94■■□□□ 1.26
TRIM28-205ENST00000595028 ARHGAP23Q9P227 1491 aa22.94■■□□□ 1.26
TRIM28-205ENST00000595028 NPHP4O75161 1426 aaPredicted RBP22.94■■□□□ 1.26
TRIM28-205ENST00000595028 NAIPQ13075 1403 aa22.93■■□□□ 1.26
TRIM28-205ENST00000595028 STRCP1A6NGW2 1772 aa22.92■■□□□ 1.26
TRIM28-205ENST00000595028 NUP155O75694 1391 aa22.91■■□□□ 1.26
TRIM28-205ENST00000595028 LRRC7Q96NW7 1537 aa22.91■■□□□ 1.26
TRIM28-205ENST00000595028 SCAF11Q99590 1463 aaKnown RBP22.91■■□□□ 1.26
TRIM28-205ENST00000595028 HFM1A2PYH4 1435 aa22.91■■□□□ 1.26
TRIM28-205ENST00000595028 IDI1Q13907 227 aa22.87■■□□□ 1.25
TRIM28-205ENST00000595028 TMEM2Q9UHN6 1383 aa22.87■■□□□ 1.25
TRIM28-205ENST00000595028 SLC52A1Q9NWF4 448 aa22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms