RNA–Protein interactions for RNA: ENST00000594828.7

LSM4-204, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 807 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-204ENST00000594828 NCOA1Q15788 1441 aa36.55■■■■□ 3.44
LSM4-204ENST00000594828 CERKQ8TCT0 537 aa36.55■■■■□ 3.44
LSM4-204ENST00000594828 PTPRTO14522 1441 aa36.54■■■■□ 3.44
LSM4-204ENST00000594828 ABCC5O15440 1437 aa36.54■■■■□ 3.44
LSM4-204ENST00000594828 MYO3AQ8NEV4 1616 aa36.54■■■■□ 3.44
LSM4-204ENST00000594828 CAMSAP1Q5T5Y3 1602 aa36.53■■■■□ 3.44
LSM4-204ENST00000594828 FBXO31Q5XUX0 539 aaPredicted RBP36.53■■■■□ 3.44
LSM4-204ENST00000594828 PZPP20742 1482 aa36.5■■■■□ 3.43
LSM4-204ENST00000594828 TCOF1Q13428 1488 aaKnown RBP36.5■■■■□ 3.43
LSM4-204ENST00000594828 CEP170BQ9Y4F5 1589 aaPredicted RBP36.49■■■■□ 3.43
LSM4-204ENST00000594828 SHANK2Q9UPX8 1470 aa36.49■■■■□ 3.43
LSM4-204ENST00000594828 ZNF142P52746 1687 aaPredicted RBP36.48■■■■□ 3.43
LSM4-204ENST00000594828 DUOX2Q9NRD8 1548 aa36.48■■■■□ 3.43
LSM4-204ENST00000594828 RRP7BPQ9NSQ0 103 aa36.47■■■■□ 3.43
LSM4-204ENST00000594828 DAPK1P53355 1430 aa36.47■■■■□ 3.43
LSM4-204ENST00000594828 RNF17Q9BXT8 1623 aaKnown RBP36.47■■■■□ 3.43
LSM4-204ENST00000594828 EIF2AK4Q9P2K8 1649 aaKnown RBP36.47■■■■□ 3.43
LSM4-204ENST00000594828 TNRQ92752 1358 aa36.46■■■■□ 3.43
LSM4-204ENST00000594828 KIF15Q9NS87 1388 aa36.45■■■■□ 3.43
LSM4-204ENST00000594828 NCKAP5LQ9HCH0 1330 aa36.45■■■■□ 3.43
LSM4-204ENST00000594828 CROCC2H7BZ55 1655 aa36.44■■■■□ 3.42
LSM4-204ENST00000594828 DNMT1P26358 1616 aaKnown RBP36.43■■■■□ 3.42
LSM4-204ENST00000594828 A2ML1A8K2U0 1454 aa36.43■■■■□ 3.42
LSM4-204ENST00000594828 PKD2Q13563 968 aa36.41■■■■□ 3.42
LSM4-204ENST00000594828 PLA2R1Q13018 1463 aa36.41■■■■□ 3.42
LSM4-204ENST00000594828 CHIC2Q9UKJ5 165 aa36.39■■■■□ 3.42
LSM4-204ENST00000594828 ABCC3O15438 1527 aa36.39■■■■□ 3.42
LSM4-204ENST00000594828 ZC3H13Q5T200 1668 aaKnown RBP36.35■■■■□ 3.41
LSM4-204ENST00000594828 ERBINQ96RT1 1412 aa36.35■■■■□ 3.41
LSM4-204ENST00000594828 FAM50AQ14320 339 aaKnown RBP36.35■■■■□ 3.41
LSM4-204ENST00000594828 MROH1Q8NDA8 1641 aa36.34■■■■□ 3.41
LSM4-204ENST00000594828 ANKRD30AQ9BXX3 1397 aa36.34■■■■□ 3.41
LSM4-204ENST00000594828 GRWD1Q9BQ67 446 aaKnown RBP eCLIP36.28■■■■□ 3.42e-7■□□□□ 8
LSM4-204ENST00000594828 NLRP1Q9C000 1473 aa36.28■■■■□ 3.4
LSM4-204ENST00000594828 THEMISQ8N1K5 641 aaPredicted RBP36.26■■■■□ 3.4
LSM4-204ENST00000594828 CEP152O94986 1710 aa36.25■■■■□ 3.39
LSM4-204ENST00000594828 LTBP4Q8N2S1 1624 aa36.24■■■■□ 3.39
LSM4-204ENST00000594828 PRDM15P57071 1507 aaPredicted RBP36.23■■■■□ 3.39
LSM4-204ENST00000594828 SPATA31D1Q6ZQQ2 1576 aa36.23■■■■□ 3.39
LSM4-204ENST00000594828 ERVK-7P63135 1459 aa36.21■■■■□ 3.39
LSM4-204ENST00000594828 UGGT1Q9NYU2 1555 aa36.2■■■■□ 3.39
LSM4-204ENST00000594828 KANK1Q14678 1352 aa36.2■■■■□ 3.39
LSM4-204ENST00000594828 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP36.2■■■■□ 3.391e-6■■■■■ 37.1
LSM4-204ENST00000594828 ADGRL2O95490 1459 aa36.18■■■■□ 3.38
LSM4-204ENST00000594828 ZNF335Q9H4Z2 1342 aaPredicted RBP36.18■■■■□ 3.38
LSM4-204ENST00000594828 ANKLE2Q86XL3 938 aa36.18■■■■□ 3.38
LSM4-204ENST00000594828 ARHGAP31Q2M1Z3 1444 aa36.17■■■■□ 3.38
LSM4-204ENST00000594828 DEPDC5O75140 1603 aa36.16■■■■□ 3.38
LSM4-204ENST00000594828 CFAP65Q6ZU64 1925 aaKnown RBP36.14■■■■□ 3.38
LSM4-204ENST00000594828 PPARGC1BQ86YN6 1023 aaKnown RBP36.13■■■■□ 3.37
LSM4-204ENST00000594828 POLR1AO95602 1720 aaPredicted RBP36.11■■■■□ 3.37
LSM4-204ENST00000594828 NEURL4Q96JN8 1562 aa36.08■■■■□ 3.37
LSM4-204ENST00000594828 IQSEC2Q5JU85 1478 aa36.08■■■■□ 3.37
LSM4-204ENST00000594828 ANKRD50Q9ULJ7 1429 aa36.07■■■■□ 3.36
LSM4-204ENST00000594828 LMTK2Q8IWU2 1503 aa36.04■■■■□ 3.36
LSM4-204ENST00000594828 VWDEQ8N2E2 1590 aa36.04■■■■□ 3.36
LSM4-204ENST00000594828 NPHP4O75161 1426 aaPredicted RBP36■■■■□ 3.35
LSM4-204ENST00000594828 MED14O60244 1454 aa36■■■■□ 3.35
LSM4-204ENST00000594828 UBR1Q8IWV7 1749 aa35.97■■■■□ 3.35
LSM4-204ENST00000594828 ROCK1Q13464 1354 aa35.95■■■■□ 3.35
LSM4-204ENST00000594828 ITGAEP38570 1179 aa35.95■■■■□ 3.35
LSM4-204ENST00000594828 STAG3Q9UJ98 1225 aa35.92■■■■□ 3.34
LSM4-204ENST00000594828 IDI1Q13907 227 aa35.91■■■■□ 3.34
LSM4-204ENST00000594828 EFCAB6Q5THR3 1501 aa35.91■■■■□ 3.34
LSM4-204ENST00000594828 TXNDC2Q86VQ3 553 aa35.9■■■■□ 3.34
LSM4-204ENST00000594828 IQGAP1P46940 1657 aa35.89■■■■□ 3.34
LSM4-204ENST00000594828 PIK3C2BO00750 1634 aa35.87■■■■□ 3.33
LSM4-204ENST00000594828 UBAP1LF5GYI3 381 aa35.87■■■■□ 3.33
LSM4-204ENST00000594828 LTKP29376 864 aa35.87■■■■□ 3.33
LSM4-204ENST00000594828 NOS1P29475 1434 aa35.87■■■■□ 3.33
LSM4-204ENST00000594828 CPS1P31327 1500 aa35.87■■■■□ 3.33
LSM4-204ENST00000594828 SCAF11Q99590 1463 aaKnown RBP35.86■■■■□ 3.33
LSM4-204ENST00000594828 ARHGAP23Q9P227 1491 aa35.86■■■■□ 3.33
LSM4-204ENST00000594828 EID1Q9Y6B2 187 aa35.86■■■■□ 3.33
LSM4-204ENST00000594828 SLIT1O75093 1534 aa35.86■■■■□ 3.33
LSM4-204ENST00000594828 SLC52A1Q9NWF4 448 aa35.83■■■■□ 3.33
LSM4-204ENST00000594828 SYNMO15061 1565 aa35.82■■■■□ 3.32
LSM4-204ENST00000594828 RPRD2Q5VT52 1461 aaKnown RBP35.82■■■■□ 3.32
LSM4-204ENST00000594828 TMEM2Q9UHN6 1383 aa35.81■■■■□ 3.32
LSM4-204ENST00000594828 UNC13BO14795 1591 aa35.8■■■■□ 3.32
LSM4-204ENST00000594828 TET3O43151 1660 aa35.78■■■■□ 3.32
LSM4-204ENST00000594828 KDM5AP29375 1690 aaKnown RBP35.77■■■■□ 3.32
LSM4-204ENST00000594828 RRBP1Q9P2E9 1410 aaKnown RBP35.73■■■■□ 3.31
LSM4-204ENST00000594828 NUP155O75694 1391 aa35.72■■■■□ 3.31
LSM4-204ENST00000594828 GCC2Q8IWJ2 1684 aa35.71■■■■□ 3.31
LSM4-204ENST00000594828 ADGRB3O60242 1522 aa35.69■■■■□ 3.3
LSM4-204ENST00000594828 TOM1O60784 492 aa35.69■■■■□ 3.3
LSM4-204ENST00000594828 IQGAP3Q86VI3 1631 aa35.67■■■■□ 3.3
LSM4-204ENST00000594828 STRCP1A6NGW2 1772 aa35.65■■■■□ 3.3
LSM4-204ENST00000594828 E9PCH4 1651 aa35.63■■■■□ 3.29
LSM4-204ENST00000594828 LRRC7Q96NW7 1537 aa35.62■■■■□ 3.29
LSM4-204ENST00000594828 PIP4K2BP78356 416 aa35.62■■■■□ 3.29
LSM4-204ENST00000594828 SCAF1Q9H7N4 1312 aaKnown RBP35.61■■■■□ 3.29
LSM4-204ENST00000594828 HDGFP51858 240 aaKnown RBP35.58■■■■□ 3.29
LSM4-204ENST00000594828 CHGAP10645 457 aaKnown RBP35.57■■■■□ 3.28
LSM4-204ENST00000594828 SLC26A8Q96RN1 970 aa35.57■■■■□ 3.28
LSM4-204ENST00000594828 BCANQ96GW7 911 aa35.56■■■■□ 3.28
LSM4-204ENST00000594828 TMEM131LA2VDJ0 1609 aa35.54■■■■□ 3.28
LSM4-204ENST00000594828 ZFYVE9O95405 1425 aa35.51■■■■□ 3.28
LSM4-204ENST00000594828 NAIPQ13075 1403 aa35.51■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms