RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 WASHC2CQ9Y4E1 1318 aa19.74■□□□□ 0.75
UPF1-203ENST00000594504 ARHGEF5Q12774 1597 aa19.72■□□□□ 0.75
UPF1-203ENST00000594504 PKD2Q13563 968 aa19.72■□□□□ 0.75
UPF1-203ENST00000594504 PLA2R1Q13018 1463 aa19.7■□□□□ 0.74
UPF1-203ENST00000594504 DNMT1P26358 1616 aaKnown RBP19.69■□□□□ 0.74
UPF1-203ENST00000594504 A2ML1A8K2U0 1454 aa19.69■□□□□ 0.74
UPF1-203ENST00000594504 TCOF1Q13428 1488 aaKnown RBP19.69■□□□□ 0.74
UPF1-203ENST00000594504 TNRQ92752 1358 aa19.69■□□□□ 0.74
UPF1-203ENST00000594504 KDM5DQ9BY66 1539 aa19.68■□□□□ 0.74
UPF1-203ENST00000594504 PZPP20742 1482 aa19.66■□□□□ 0.74
UPF1-203ENST00000594504 MAP3K1Q13233 1512 aa19.65■□□□□ 0.74
UPF1-203ENST00000594504 MYOM3Q5VTT5 1437 aa19.64■□□□□ 0.73
UPF1-203ENST00000594504 MAST1Q9Y2H9 1570 aa19.62■□□□□ 0.73
UPF1-203ENST00000594504 IQSEC2Q5JU85 1478 aa19.62■□□□□ 0.73
UPF1-203ENST00000594504 MIA2Q96PC5 1412 aa19.62■□□□□ 0.73
UPF1-203ENST00000594504 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.62■□□□□ 0.73
UPF1-203ENST00000594504 UBAP1LF5GYI3 381 aa19.6■□□□□ 0.73
UPF1-203ENST00000594504 DISP3Q9P2K9 1392 aa19.59■□□□□ 0.73
UPF1-203ENST00000594504 FAM135AQ9P2D6 1515 aa19.59■□□□□ 0.73
UPF1-203ENST00000594504 CFAP65Q6ZU64 1925 aaKnown RBP19.59■□□□□ 0.73
UPF1-203ENST00000594504 APLP2Q06481 763 aa19.58■□□□□ 0.72
UPF1-203ENST00000594504 ANKLE2Q86XL3 938 aa19.58■□□□□ 0.72
UPF1-203ENST00000594504 THEMISQ8N1K5 641 aaPredicted RBP19.58■□□□□ 0.72
UPF1-203ENST00000594504 RNF17Q9BXT8 1623 aaKnown RBP19.58■□□□□ 0.72
UPF1-203ENST00000594504 NEURL4Q96JN8 1562 aa19.57■□□□□ 0.72
UPF1-203ENST00000594504 ABCC3O15438 1527 aa19.57■□□□□ 0.72
UPF1-203ENST00000594504 POLR1AO95602 1720 aaPredicted RBP19.57■□□□□ 0.72
UPF1-203ENST00000594504 ILDR2Q71H61 639 aa19.57■□□□□ 0.72
UPF1-203ENST00000594504 RRP7BPQ9NSQ0 103 aa19.57■□□□□ 0.72
UPF1-203ENST00000594504 UGGT1Q9NYU2 1555 aa19.56■□□□□ 0.72
UPF1-203ENST00000594504 MROH1Q8NDA8 1641 aa19.55■□□□□ 0.72
UPF1-203ENST00000594504 CEP152O94986 1710 aa19.55■□□□□ 0.72
UPF1-203ENST00000594504 NLRP1Q9C000 1473 aa19.54■□□□□ 0.72
UPF1-203ENST00000594504 ABCC5O15440 1437 aa19.54■□□□□ 0.72
UPF1-203ENST00000594504 EIF2AK4Q9P2K8 1649 aaKnown RBP19.54■□□□□ 0.72
UPF1-203ENST00000594504 PTPN23Q9H3S7 1636 aa19.53■□□□□ 0.72
UPF1-203ENST00000594504 DUOX2Q9NRD8 1548 aa19.52■□□□□ 0.72
UPF1-203ENST00000594504 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.52■□□□□ 0.727e-8■□□□□ 8.3
UPF1-203ENST00000594504 CHIC2Q9UKJ5 165 aa19.52■□□□□ 0.72
UPF1-203ENST00000594504 KIF15Q9NS87 1388 aa19.51■□□□□ 0.71
UPF1-203ENST00000594504 ERVK-7P63135 1459 aa19.51■□□□□ 0.71
UPF1-203ENST00000594504 SHANK2Q9UPX8 1470 aa19.51■□□□□ 0.71
UPF1-203ENST00000594504 SPATA31D1Q6ZQQ2 1576 aa19.51■□□□□ 0.71
UPF1-203ENST00000594504 ZC3H13Q5T200 1668 aaKnown RBP19.51■□□□□ 0.71
UPF1-203ENST00000594504 NPHP4O75161 1426 aaPredicted RBP19.5■□□□□ 0.71
UPF1-203ENST00000594504 DAPK1P53355 1430 aa19.49■□□□□ 0.71
UPF1-203ENST00000594504 CROCC2H7BZ55 1655 aa19.49■□□□□ 0.71
UPF1-203ENST00000594504 PIP4K2BP78356 416 aa19.48■□□□□ 0.71
UPF1-203ENST00000594504 SCAF1Q9H7N4 1312 aaKnown RBP19.48■□□□□ 0.71
UPF1-203ENST00000594504 MED14O60244 1454 aa19.47■□□□□ 0.71
UPF1-203ENST00000594504 VWDEQ8N2E2 1590 aa19.46■□□□□ 0.71
UPF1-203ENST00000594504 FGD6Q6ZV73 1430 aa19.46■□□□□ 0.71
UPF1-203ENST00000594504 DEPDC5O75140 1603 aa19.46■□□□□ 0.71
UPF1-203ENST00000594504 CPS1P31327 1500 aa19.45■□□□□ 0.7
UPF1-203ENST00000594504 ERBINQ96RT1 1412 aa19.43■□□□□ 0.7
UPF1-203ENST00000594504 IQGAP1P46940 1657 aa19.43■□□□□ 0.7
UPF1-203ENST00000594504 UBR1Q8IWV7 1749 aa19.43■□□□□ 0.7
UPF1-203ENST00000594504 TOM1O60784 492 aa19.43■□□□□ 0.7
UPF1-203ENST00000594504 LTKP29376 864 aa19.42■□□□□ 0.7
UPF1-203ENST00000594504 STRCP1A6NGW2 1772 aa19.42■□□□□ 0.7
UPF1-203ENST00000594504 PRDM15P57071 1507 aaPredicted RBP19.41■□□□□ 0.7
UPF1-203ENST00000594504 HSPA1LP34931 641 aa19.41■□□□□ 0.7
UPF1-203ENST00000594504 TXNDC2Q86VQ3 553 aa19.41■□□□□ 0.7
UPF1-203ENST00000594504 ANKRD30AQ9BXX3 1397 aa19.4■□□□□ 0.7
UPF1-203ENST00000594504 ARHGAP31Q2M1Z3 1444 aa19.4■□□□□ 0.7
UPF1-203ENST00000594504 FAM50AQ14320 339 aaKnown RBP19.39■□□□□ 0.69
UPF1-203ENST00000594504 KANK1Q14678 1352 aa19.38■□□□□ 0.69
UPF1-203ENST00000594504 SOCS7O14512 581 aa19.36■□□□□ 0.69
UPF1-203ENST00000594504 IDI1Q13907 227 aa19.36■□□□□ 0.69
UPF1-203ENST00000594504 SENP3Q9H4L4 574 aaPredicted RBP19.36■□□□□ 0.69
UPF1-203ENST00000594504 STAG3Q9UJ98 1225 aa19.36■□□□□ 0.69
UPF1-203ENST00000594504 PIK3C2BO00750 1634 aa19.36■□□□□ 0.69
UPF1-203ENST00000594504 SCAF11Q99590 1463 aaKnown RBP19.35■□□□□ 0.69
UPF1-203ENST00000594504 ALKQ9UM73 1620 aa19.35■□□□□ 0.69
UPF1-203ENST00000594504 LRRC7Q96NW7 1537 aa19.35■□□□□ 0.69
UPF1-203ENST00000594504 ARHGAP23Q9P227 1491 aa19.35■□□□□ 0.69
UPF1-203ENST00000594504 SLIT1O75093 1534 aa19.33■□□□□ 0.68
UPF1-203ENST00000594504 EID1Q9Y6B2 187 aa19.32■□□□□ 0.68
UPF1-203ENST00000594504 LMTK2Q8IWU2 1503 aa19.3■□□□□ 0.68
UPF1-203ENST00000594504 TMEM2Q9UHN6 1383 aa19.3■□□□□ 0.68
UPF1-203ENST00000594504 ADGRL2O95490 1459 aa19.29■□□□□ 0.68
UPF1-203ENST00000594504 SYNMO15061 1565 aa19.28■□□□□ 0.68
UPF1-203ENST00000594504 PPARGC1BQ86YN6 1023 aaKnown RBP19.27■□□□□ 0.68
UPF1-203ENST00000594504 NOS1P29475 1434 aa19.26■□□□□ 0.67
UPF1-203ENST00000594504 ANKRD50Q9ULJ7 1429 aa19.26■□□□□ 0.67
UPF1-203ENST00000594504 SLC26A8Q96RN1 970 aa19.26■□□□□ 0.67
UPF1-203ENST00000594504 EFCAB6Q5THR3 1501 aa19.25■□□□□ 0.67
UPF1-203ENST00000594504 XIRP1Q702N8 1843 aaKnown RBP19.25■□□□□ 0.67
UPF1-203ENST00000594504 RBM33Q96EV2 1170 aaKnown RBP19.24■□□□□ 0.67
UPF1-203ENST00000594504 MED1Q15648 1581 aaPredicted RBP19.23■□□□□ 0.67
UPF1-203ENST00000594504 BCANQ96GW7 911 aa19.21■□□□□ 0.67
UPF1-203ENST00000594504 SLC52A1Q9NWF4 448 aa19.21■□□□□ 0.67
UPF1-203ENST00000594504 KDM5AP29375 1690 aaKnown RBP19.2■□□□□ 0.66
UPF1-203ENST00000594504 KCNA6P17658 529 aa19.2■□□□□ 0.66
UPF1-203ENST00000594504 ITGAEP38570 1179 aa19.2■□□□□ 0.66
UPF1-203ENST00000594504 TET3O43151 1660 aa19.2■□□□□ 0.66
UPF1-203ENST00000594504 ADGRB3O60242 1522 aa19.19■□□□□ 0.66
UPF1-203ENST00000594504 MYO5BQ9ULV0 1848 aa19.18■□□□□ 0.66
UPF1-203ENST00000594504 PROSER2Q86WR7 435 aaPredicted RBP19.18■□□□□ 0.66
UPF1-203ENST00000594504 TMEM94Q12767 1356 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms