RNA–Protein interactions for RNA: ENST00000593919.5

VRK3-205, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best) BASIC

Gene VRK3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-205ENST00000593919 DHX29Q7Z478 1369 aaKnown RBP19.25■□□□□ 0.67
VRK3-205ENST00000593919 FOXD1Q16676 465 aa19.24■□□□□ 0.67
VRK3-205ENST00000593919 ZMYM4Q5VZL5 1548 aa19.24■□□□□ 0.67
VRK3-205ENST00000593919 DEPDC5O75140 1603 aa19.24■□□□□ 0.67
VRK3-205ENST00000593919 IQGAP3Q86VI3 1631 aa19.24■□□□□ 0.67
VRK3-205ENST00000593919 DIP2CQ9Y2E4 1556 aa19.23■□□□□ 0.67
VRK3-205ENST00000593919 A2MP01023 1474 aa19.22■□□□□ 0.67
VRK3-205ENST00000593919 NEUROD1Q13562 356 aa19.21■□□□□ 0.67
VRK3-205ENST00000593919 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.21■□□□□ 0.67
VRK3-205ENST00000593919 COL17A1Q9UMD9 1497 aaPredicted RBP19.2■□□□□ 0.66
VRK3-205ENST00000593919 YEATS2Q9ULM3 1422 aa19.19■□□□□ 0.66
VRK3-205ENST00000593919 PKD2Q13563 968 aa19.19■□□□□ 0.66
VRK3-205ENST00000593919 ANKRD30BQ9BXX2 1392 aa19.19■□□□□ 0.66
VRK3-205ENST00000593919 MROH1Q8NDA8 1641 aa19.18■□□□□ 0.66
VRK3-205ENST00000593919 KIF3BO15066 747 aa19.17■□□□□ 0.66
VRK3-205ENST00000593919 BCORL1Q5H9F3 1711 aa19.17■□□□□ 0.66
VRK3-205ENST00000593919 PRDM15P57071 1507 aaPredicted RBP19.17■□□□□ 0.66
VRK3-205ENST00000593919 TRHP20396 242 aaPredicted RBP19.17■□□□□ 0.66
VRK3-205ENST00000593919 RNF17Q9BXT8 1623 aaKnown RBP19.16■□□□□ 0.66
VRK3-205ENST00000593919 VWDEQ8N2E2 1590 aa19.14■□□□□ 0.66
VRK3-205ENST00000593919 TIMELESSQ9UNS1 1208 aa19.11■□□□□ 0.65
VRK3-205ENST00000593919 RPRD2Q5VT52 1461 aaKnown RBP19.11■□□□□ 0.65
VRK3-205ENST00000593919 TET3O43151 1660 aa19.11■□□□□ 0.65
VRK3-205ENST00000593919 KANK1Q14678 1352 aa19.1■□□□□ 0.65
VRK3-205ENST00000593919 TONSLQ96HA7 1378 aa19.1■□□□□ 0.65
VRK3-205ENST00000593919 E9PCH4 1651 aa19.1■□□□□ 0.65
VRK3-205ENST00000593919 CEP152O94986 1710 aa19.1■□□□□ 0.65
VRK3-205ENST00000593919 ARHGEF40Q8TER5 1519 aa19.09■□□□□ 0.65
VRK3-205ENST00000593919 ATP10AO60312 1499 aa19.08■□□□□ 0.65
VRK3-205ENST00000593919 REREQ9P2R6 1566 aa19.08■□□□□ 0.64
VRK3-205ENST00000593919 SIGLEC1Q9BZZ2 1709 aa19.05■□□□□ 0.64
VRK3-205ENST00000593919 GGT6Q6P531 493 aa19.04■□□□□ 0.64
VRK3-205ENST00000593919 LMTK2Q8IWU2 1503 aa19.04■□□□□ 0.64
VRK3-205ENST00000593919 PLA2R1Q13018 1463 aa19.03■□□□□ 0.64
VRK3-205ENST00000593919 EFCAB6Q5THR3 1501 aa19.03■□□□□ 0.64
VRK3-205ENST00000593919 SPHKAPQ2M3C7 1700 aa19.03■□□□□ 0.64
VRK3-205ENST00000593919 ZNF316A6NFI3 1004 aaPredicted RBP19.02■□□□□ 0.64
VRK3-205ENST00000593919 DIEXFQ68CQ4 756 aaKnown RBP19.02■□□□□ 0.64
VRK3-205ENST00000593919 AGLP35573 1532 aa19.01■□□□□ 0.63
VRK3-205ENST00000593919 PPP1R15AO75807 674 aaPredicted RBP19.01■□□□□ 0.63
VRK3-205ENST00000593919 ABCC3O15438 1527 aa19■□□□□ 0.63
VRK3-205ENST00000593919 CCDC144AA2RUR9 1427 aa19■□□□□ 0.63
VRK3-205ENST00000593919 ZC3H13Q5T200 1668 aaKnown RBP19■□□□□ 0.63
VRK3-205ENST00000593919 CFAP65Q6ZU64 1925 aaKnown RBP18.99■□□□□ 0.63
VRK3-205ENST00000593919 CAMSAP1Q5T5Y3 1602 aa18.98■□□□□ 0.63
VRK3-205ENST00000593919 L3MBTL2Q969R5 705 aa18.98■□□□□ 0.63
VRK3-205ENST00000593919 TRPM2O94759 1503 aa18.98■□□□□ 0.63
VRK3-205ENST00000593919 WASHC2CQ9Y4E1 1318 aa18.97■□□□□ 0.63
VRK3-205ENST00000593919 PTPRTO14522 1441 aa18.96■□□□□ 0.63
VRK3-205ENST00000593919 NPATQ14207 1427 aa18.94■□□□□ 0.62
VRK3-205ENST00000593919 CLTCL1P53675 1640 aa18.93■□□□□ 0.62
VRK3-205ENST00000593919 CLTCQ00610 1675 aaKnown RBP18.88■□□□□ 0.61
VRK3-205ENST00000593919 ARHGAP31Q2M1Z3 1444 aa18.88■□□□□ 0.61
VRK3-205ENST00000593919 UGGT1Q9NYU2 1555 aa18.88■□□□□ 0.61
VRK3-205ENST00000593919 MLECQ14165 292 aa18.86■□□□□ 0.61
VRK3-205ENST00000593919 KIF1BO60333 1816 aa18.86■□□□□ 0.61
VRK3-205ENST00000593919 PPP6R1Q9UPN7 881 aa18.86■□□□□ 0.61
VRK3-205ENST00000593919 SPATA31E1Q6ZUB1 1445 aa18.85■□□□□ 0.61
VRK3-205ENST00000593919 CNTLNQ9NXG0 1405 aa18.85■□□□□ 0.61
VRK3-205ENST00000593919 PREX1Q8TCU6 1659 aa18.85■□□□□ 0.61
VRK3-205ENST00000593919 RGL3Q3MIN7 710 aa18.84■□□□□ 0.61
VRK3-205ENST00000593919 NOS1P29475 1434 aa18.84■□□□□ 0.61
VRK3-205ENST00000593919 ARID4BQ4LE39 1312 aaPredicted RBP18.84■□□□□ 0.61
VRK3-205ENST00000593919 NBPF8Q3BBV2 869 aa18.83■□□□□ 0.61
VRK3-205ENST00000593919 SYNMO15061 1565 aa18.83■□□□□ 0.6
VRK3-205ENST00000593919 DCAF11Q8TEB1 546 aa18.81■□□□□ 0.6
VRK3-205ENST00000593919 MROH2AA6NES4 1674 aa18.81■□□□□ 0.6
VRK3-205ENST00000593919 NEURL4Q96JN8 1562 aa18.81■□□□□ 0.6
VRK3-205ENST00000593919 PIK3C2BO00750 1634 aa18.81■□□□□ 0.6
VRK3-205ENST00000593919 UHRF1BP1Q6BDS2 1440 aa18.8■□□□□ 0.6
VRK3-205ENST00000593919 ZNF326Q5BKZ1 582 aaKnown RBP18.79■□□□□ 0.6
VRK3-205ENST00000593919 KDM2AQ9Y2K7 1162 aa18.79■□□□□ 0.6
VRK3-205ENST00000593919 ADGRB3O60242 1522 aa18.77■□□□□ 0.6
VRK3-205ENST00000593919 ERVK-7P63135 1459 aa18.76■□□□□ 0.59
VRK3-205ENST00000593919 ESF1Q9H501 851 aaKnown RBP18.75■□□□□ 0.59
VRK3-205ENST00000593919 PRAG1Q86YV5 1406 aa18.75■□□□□ 0.59
VRK3-205ENST00000593919 IFT172Q9UG01 1749 aa18.75■□□□□ 0.59
VRK3-205ENST00000593919 FBXO31Q5XUX0 539 aaPredicted RBP18.75■□□□□ 0.59
VRK3-205ENST00000593919 FER1L4A9Z1Z3 1794 aa18.74■□□□□ 0.59
VRK3-205ENST00000593919 RALGAPBQ86X10 1494 aa18.74■□□□□ 0.59
VRK3-205ENST00000593919 SPATA31D1Q6ZQQ2 1576 aa18.74■□□□□ 0.59
VRK3-205ENST00000593919 TRPM1Q7Z4N2 1603 aa18.73■□□□□ 0.59
VRK3-205ENST00000593919 MYO5BQ9ULV0 1848 aa18.73■□□□□ 0.59
VRK3-205ENST00000593919 ZMYM3Q14202 1370 aa18.72■□□□□ 0.59
VRK3-205ENST00000593919 MADDQ8WXG6 1647 aa18.71■□□□□ 0.59
VRK3-205ENST00000593919 PPLO60437 1756 aa18.7■□□□□ 0.58
VRK3-205ENST00000593919 CHGAP10645 457 aaKnown RBP18.7■□□□□ 0.58
VRK3-205ENST00000593919 IDI1Q13907 227 aa18.7■□□□□ 0.58
VRK3-205ENST00000593919 HIRIP3Q9BW71 556 aaPredicted RBP18.7■□□□□ 0.58
VRK3-205ENST00000593919 SLC52A1Q9NWF4 448 aa18.7■□□□□ 0.58
VRK3-205ENST00000593919 TMEM131LA2VDJ0 1609 aa18.68■□□□□ 0.58
VRK3-205ENST00000593919 MYOM2P54296 1465 aa18.67■□□□□ 0.58
VRK3-205ENST00000593919 C3P01024 1663 aa18.66■□□□□ 0.58
VRK3-205ENST00000593919 STAC3Q96MF2 364 aa18.66■□□□□ 0.58
VRK3-205ENST00000593919 EIF4G2P78344 907 aaKnown RBP eCLIP18.66■□□□□ 0.581e-6■■■□□ 15.7
VRK3-205ENST00000593919 HSPA5P11021 654 aaKnown RBP18.65■□□□□ 0.58
VRK3-205ENST00000593919 MIER1Q8N108 512 aa18.65■□□□□ 0.58
VRK3-205ENST00000593919 ROCK2O75116 1388 aaKnown RBP18.65■□□□□ 0.58
VRK3-205ENST00000593919 NEXMIFQ5QGS0 1516 aa18.63■□□□□ 0.57
VRK3-205ENST00000593919 LAMC1P11047 1609 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms