RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 TSPY4P0CV99 314 aa37.94■■■■□ 3.66
LSM4-202ENST00000593564 TSPY10P0CW01 314 aa37.94■■■■□ 3.66
LSM4-202ENST00000593564 TCOF1Q13428 1488 aaKnown RBP37.93■■■■□ 3.66
LSM4-202ENST00000593564 KDM5DQ9BY66 1539 aa37.92■■■■□ 3.66
LSM4-202ENST00000593564 A2ML1A8K2U0 1454 aa37.9■■■■□ 3.66
LSM4-202ENST00000593564 IQSEC2Q5JU85 1478 aa37.9■■■■□ 3.66
LSM4-202ENST00000593564 KANK4Q5T7N3 995 aaPredicted RBP37.88■■■■□ 3.65
LSM4-202ENST00000593564 PZPP20742 1482 aa37.88■■■■□ 3.65
LSM4-202ENST00000593564 WASHC2CQ9Y4E1 1318 aa37.86■■■■□ 3.65
LSM4-202ENST00000593564 TNRQ92752 1358 aa37.84■■■■□ 3.65
LSM4-202ENST00000593564 FBXO31Q5XUX0 539 aaPredicted RBP37.83■■■■□ 3.65
LSM4-202ENST00000593564 MIA2Q96PC5 1412 aa37.83■■■■□ 3.65
LSM4-202ENST00000593564 MAST1Q9Y2H9 1570 aa37.83■■■■□ 3.65
LSM4-202ENST00000593564 DNMT1P26358 1616 aaKnown RBP37.83■■■■□ 3.65
LSM4-202ENST00000593564 MYOM3Q5VTT5 1437 aa37.81■■■■□ 3.64
LSM4-202ENST00000593564 ZNF335Q9H4Z2 1342 aaPredicted RBP37.8■■■■□ 3.64
LSM4-202ENST00000593564 RNF17Q9BXT8 1623 aaKnown RBP37.74■■■■□ 3.63
LSM4-202ENST00000593564 NLRP1Q9C000 1473 aa37.69■■■■□ 3.62
LSM4-202ENST00000593564 EIF2AK4Q9P2K8 1649 aaKnown RBP37.69■■■■□ 3.62
LSM4-202ENST00000593564 ABCC3O15438 1527 aa37.66■■■■□ 3.62
LSM4-202ENST00000593564 ZC3H13Q5T200 1668 aaKnown RBP37.64■■■■□ 3.62
LSM4-202ENST00000593564 POLR1AO95602 1720 aaPredicted RBP37.63■■■■□ 3.61
LSM4-202ENST00000593564 NEURL4Q96JN8 1562 aa37.63■■■■□ 3.61
LSM4-202ENST00000593564 THEMISQ8N1K5 641 aaPredicted RBP37.62■■■■□ 3.61
LSM4-202ENST00000593564 DUOX2Q9NRD8 1548 aa37.61■■■■□ 3.61
LSM4-202ENST00000593564 UGGT1Q9NYU2 1555 aa37.6■■■■□ 3.61
LSM4-202ENST00000593564 APLP2Q06481 763 aa37.6■■■■□ 3.61
LSM4-202ENST00000593564 MROH1Q8NDA8 1641 aa37.6■■■■□ 3.61
LSM4-202ENST00000593564 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP37.59■■■■□ 3.611e-6■■■■■ 37.1
LSM4-202ENST00000593564 ANKLE2Q86XL3 938 aa37.59■■■■□ 3.61
LSM4-202ENST00000593564 SPATA31D1Q6ZQQ2 1576 aa37.58■■■■□ 3.61
LSM4-202ENST00000593564 SHANK2Q9UPX8 1470 aa37.58■■■■□ 3.61
LSM4-202ENST00000593564 ABCC5O15440 1437 aa37.55■■■■□ 3.6
LSM4-202ENST00000593564 UBAP1LF5GYI3 381 aa37.55■■■■□ 3.6
LSM4-202ENST00000593564 PTPN23Q9H3S7 1636 aa37.54■■■■□ 3.6
LSM4-202ENST00000593564 DISP3Q9P2K9 1392 aa37.54■■■■□ 3.6
LSM4-202ENST00000593564 ERVK-7P63135 1459 aa37.53■■■■□ 3.6
LSM4-202ENST00000593564 KIF15Q9NS87 1388 aa37.53■■■■□ 3.6
LSM4-202ENST00000593564 CROCC2H7BZ55 1655 aa37.5■■■■□ 3.59
LSM4-202ENST00000593564 MED14O60244 1454 aa37.5■■■■□ 3.59
LSM4-202ENST00000593564 DEPDC5O75140 1603 aa37.5■■■■□ 3.59
LSM4-202ENST00000593564 ERBINQ96RT1 1412 aa37.49■■■■□ 3.59
LSM4-202ENST00000593564 CPS1P31327 1500 aa37.48■■■■□ 3.59
LSM4-202ENST00000593564 NPHP4O75161 1426 aaPredicted RBP37.47■■■■□ 3.59
LSM4-202ENST00000593564 FGD6Q6ZV73 1430 aa37.47■■■■□ 3.59
LSM4-202ENST00000593564 DAPK1P53355 1430 aa37.46■■■■□ 3.59
LSM4-202ENST00000593564 CEP152O94986 1710 aa37.46■■■■□ 3.59
LSM4-202ENST00000593564 PRDM15P57071 1507 aaPredicted RBP37.46■■■■□ 3.59
LSM4-202ENST00000593564 RRP7BPQ9NSQ0 103 aa37.45■■■■□ 3.59
LSM4-202ENST00000593564 ARHGAP31Q2M1Z3 1444 aa37.42■■■■□ 3.58
LSM4-202ENST00000593564 VWDEQ8N2E2 1590 aa37.42■■■■□ 3.58
LSM4-202ENST00000593564 IQGAP1P46940 1657 aa37.36■■■■□ 3.57
LSM4-202ENST00000593564 ANKRD30AQ9BXX3 1397 aa37.33■■■■□ 3.57
LSM4-202ENST00000593564 ILDR2Q71H61 639 aa37.33■■■■□ 3.57
LSM4-202ENST00000593564 UBR1Q8IWV7 1749 aa37.32■■■■□ 3.56
LSM4-202ENST00000593564 CFAP65Q6ZU64 1925 aaKnown RBP37.31■■■■□ 3.56
LSM4-202ENST00000593564 TOM1O60784 492 aa37.3■■■■□ 3.56
LSM4-202ENST00000593564 GRWD1Q9BQ67 446 aaKnown RBP eCLIP37.3■■■■□ 3.562e-7■□□□□ 8
LSM4-202ENST00000593564 KANK1Q14678 1352 aa37.29■■■■□ 3.56
LSM4-202ENST00000593564 CHIC2Q9UKJ5 165 aa37.28■■■■□ 3.56
LSM4-202ENST00000593564 SCAF11Q99590 1463 aaKnown RBP37.26■■■■□ 3.55
LSM4-202ENST00000593564 ARHGAP23Q9P227 1491 aa37.26■■■■□ 3.55
LSM4-202ENST00000593564 SLIT1O75093 1534 aa37.24■■■■□ 3.55
LSM4-202ENST00000593564 LMTK2Q8IWU2 1503 aa37.24■■■■□ 3.55
LSM4-202ENST00000593564 SCAF1Q9H7N4 1312 aaKnown RBP37.22■■■■□ 3.55
LSM4-202ENST00000593564 PIP4K2BP78356 416 aa37.22■■■■□ 3.55
LSM4-202ENST00000593564 ADGRL2O95490 1459 aa37.2■■■■□ 3.55
LSM4-202ENST00000593564 LTKP29376 864 aa37.19■■■■□ 3.54
LSM4-202ENST00000593564 TXNDC2Q86VQ3 553 aa37.18■■■■□ 3.54
LSM4-202ENST00000593564 STRCP1A6NGW2 1772 aa37.17■■■■□ 3.54
LSM4-202ENST00000593564 HSPA1LP34931 641 aa37.16■■■■□ 3.54
LSM4-202ENST00000593564 LRRC7Q96NW7 1537 aa37.15■■■■□ 3.54
LSM4-202ENST00000593564 PIK3C2BO00750 1634 aa37.15■■■■□ 3.54
LSM4-202ENST00000593564 SYNMO15061 1565 aa37.14■■■■□ 3.54
LSM4-202ENST00000593564 SOCS7O14512 581 aa37.13■■■■□ 3.53
LSM4-202ENST00000593564 FAM50AQ14320 339 aaKnown RBP37.13■■■■□ 3.53
LSM4-202ENST00000593564 EID1Q9Y6B2 187 aa37.13■■■■□ 3.53
LSM4-202ENST00000593564 TMEM2Q9UHN6 1383 aa37.13■■■■□ 3.53
LSM4-202ENST00000593564 ALKQ9UM73 1620 aa37.13■■■■□ 3.53
LSM4-202ENST00000593564 EFCAB6Q5THR3 1501 aa37.1■■■■□ 3.53
LSM4-202ENST00000593564 STAG3Q9UJ98 1225 aa37.09■■■■□ 3.53
LSM4-202ENST00000593564 KDM5AP29375 1690 aaKnown RBP37.09■■■■□ 3.53
LSM4-202ENST00000593564 IDI1Q13907 227 aa37.08■■■■□ 3.53
LSM4-202ENST00000593564 NOS1P29475 1434 aa37.08■■■■□ 3.53
LSM4-202ENST00000593564 ANKRD50Q9ULJ7 1429 aa37.06■■■■□ 3.52
LSM4-202ENST00000593564 SLC52A1Q9NWF4 448 aa36.98■■■■□ 3.51
LSM4-202ENST00000593564 RPRD2Q5VT52 1461 aaKnown RBP36.98■■■■□ 3.51
LSM4-202ENST00000593564 ADGRB3O60242 1522 aa36.96■■■■□ 3.51
LSM4-202ENST00000593564 MED1Q15648 1581 aaPredicted RBP36.94■■■■□ 3.5
LSM4-202ENST00000593564 TET3O43151 1660 aa36.9■■■■□ 3.5
LSM4-202ENST00000593564 ROCK1Q13464 1354 aa36.87■■■■□ 3.49
LSM4-202ENST00000593564 XIRP1Q702N8 1843 aaKnown RBP36.85■■■■□ 3.49
LSM4-202ENST00000593564 UNC13BO14795 1591 aa36.85■■■■□ 3.49
LSM4-202ENST00000593564 KCNA6P17658 529 aa36.84■■■■□ 3.49
LSM4-202ENST00000593564 SLC26A8Q96RN1 970 aa36.83■■■■□ 3.49
LSM4-202ENST00000593564 GCC2Q8IWJ2 1684 aa36.8■■■■□ 3.48
LSM4-202ENST00000593564 TMEM94Q12767 1356 aa36.79■■■■□ 3.48
LSM4-202ENST00000593564 ZFYVE9O95405 1425 aa36.78■■■■□ 3.48
LSM4-202ENST00000593564 SENP3Q9H4L4 574 aaPredicted RBP36.77■■■■□ 3.48
LSM4-202ENST00000593564 NWD1Q149M9 1564 aa36.74■■■■□ 3.47
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms