RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 NUTM2FA1L443 756 aa11.32□□□□□ -0.6
SMAD4-216ENST00000593223 EN1Q05925 392 aaPredicted RBP11.31□□□□□ -0.6
SMAD4-216ENST00000593223 GPIHBP1Q8IV16 184 aa11.3□□□□□ -0.6
SMAD4-216ENST00000593223 PRIM1P49642 420 aaKnown RBP11.29□□□□□ -0.6
SMAD4-216ENST00000593223 ADAM33Q9BZ11 813 aa11.29□□□□□ -0.6
SMAD4-216ENST00000593223 HS3ST6Q96QI5 342 aa11.28□□□□□ -0.6
SMAD4-216ENST00000593223 C6orf132Q5T0Z8 1188 aa11.26□□□□□ -0.61
SMAD4-216ENST00000593223 KCNH8Q96L42 1107 aa11.26□□□□□ -0.61
SMAD4-216ENST00000593223 TSR1Q2NL82 804 aaKnown RBP11.25□□□□□ -0.61
SMAD4-216ENST00000593223 TPRNQ4KMQ1 711 aa11.25□□□□□ -0.61
SMAD4-216ENST00000593223 BCL2L12Q9HB09 334 aa11.25□□□□□ -0.61
SMAD4-216ENST00000593223 PTPREP23469 700 aa11.24□□□□□ -0.61
SMAD4-216ENST00000593223 CDHR5Q9HBB8 845 aa11.23□□□□□ -0.61
SMAD4-216ENST00000593223 KCNK17Q96T54 332 aa11.22□□□□□ -0.61
SMAD4-216ENST00000593223 FCHSD2O94868 740 aa11.21□□□□□ -0.61
SMAD4-216ENST00000593223 ZNF687Q8N1G0 1237 aa11.21□□□□□ -0.61
SMAD4-216ENST00000593223 ZC3H15Q8WU90 426 aaKnown RBP11.21□□□□□ -0.61
SMAD4-216ENST00000593223 ARHGAP33O14559 1287 aa11.18□□□□□ -0.62
SMAD4-216ENST00000593223 PTGDRQ13258 359 aa11.18□□□□□ -0.62
SMAD4-216ENST00000593223 CERKQ8TCT0 537 aa11.18□□□□□ -0.62
SMAD4-216ENST00000593223 AXIN2Q9Y2T1 843 aa11.18□□□□□ -0.62
SMAD4-216ENST00000593223 PSEN2P49810 448 aa11.17□□□□□ -0.62
SMAD4-216ENST00000593223 PPP1R3GB7ZBB8 358 aa11.16□□□□□ -0.62
SMAD4-216ENST00000593223 COL9A1P20849 921 aa11.16□□□□□ -0.62
SMAD4-216ENST00000593223 PBX2P40425 430 aa11.16□□□□□ -0.62
SMAD4-216ENST00000593223 HIC1Q14526 733 aa11.16□□□□□ -0.62
SMAD4-216ENST00000593223 PRKCSHP14314 528 aaPredicted RBP11.15□□□□□ -0.62
SMAD4-216ENST00000593223 NPDC1Q9NQX5 325 aaPredicted RBP11.15□□□□□ -0.62
SMAD4-216ENST00000593223 GNPATO15228 680 aa11.14□□□□□ -0.63
SMAD4-216ENST00000593223 GPR37O15354 613 aa11.14□□□□□ -0.63
SMAD4-216ENST00000593223 KRI1Q8N9T8 703 aaKnown RBP11.14□□□□□ -0.63
SMAD4-216ENST00000593223 ZMYND10O75800 440 aa11.12□□□□□ -0.63
SMAD4-216ENST00000593223 POTEEQ6S8J3 1075 aa11.12□□□□□ -0.63
SMAD4-216ENST00000593223 PRSS12P56730 875 aa11.11□□□□□ -0.63
SMAD4-216ENST00000593223 DMRTA1Q5VZB9 504 aa11.1□□□□□ -0.63
SMAD4-216ENST00000593223 BARGINQ6ZT62 677 aa11.1□□□□□ -0.63
SMAD4-216ENST00000593223 CDCA7LQ96GN5 454 aa11.1□□□□□ -0.63
SMAD4-216ENST00000593223 FECHP22830 423 aa11.09□□□□□ -0.63
SMAD4-216ENST00000593223 PADI6Q6TGC4 694 aa11.09□□□□□ -0.63
SMAD4-216ENST00000593223 PROX2Q3B8N5 592 aa11.07□□□□□ -0.64
SMAD4-216ENST00000593223 ZBED2Q9BTP6 218 aa11.07□□□□□ -0.64
SMAD4-216ENST00000593223 RBM27Q9P2N5 1060 aaKnown RBP11.07□□□□□ -0.64
SMAD4-216ENST00000593223 TRIM6-TRIM34B2RNG4 842 aa11.06□□□□□ -0.64
SMAD4-216ENST00000593223 LSM11P83369 360 aaKnown RBP eCLIP11.06□□□□□ -0.64
SMAD4-216ENST00000593223 ANKRD13DQ6ZTN6 518 aa11.06□□□□□ -0.64
SMAD4-216ENST00000593223 MAP2K5Q13163 448 aa11.05□□□□□ -0.64
SMAD4-216ENST00000593223 PACS2Q86VP3 889 aa11.05□□□□□ -0.64
SMAD4-216ENST00000593223 SLC24A3Q9HC58 644 aa11.05□□□□□ -0.64
SMAD4-216ENST00000593223 TSKSQ9UJT2 592 aa11.04□□□□□ -0.64
SMAD4-216ENST00000593223 MINK1Q8N4C8 1332 aaPredicted RBP11.04□□□□□ -0.64
SMAD4-216ENST00000593223 SLC4A5Q9BY07 1137 aa11.02□□□□□ -0.65
SMAD4-216ENST00000593223 KIAA1468Q9P260 1216 aa11.02□□□□□ -0.65
SMAD4-216ENST00000593223 VPS9D1Q9Y2B5 631 aa11.02□□□□□ -0.65
SMAD4-216ENST00000593223 NBPF26B4DH59 902 aa11.01□□□□□ -0.65
SMAD4-216ENST00000593223 IRF6O14896 467 aa11.01□□□□□ -0.65
SMAD4-216ENST00000593223 ONECUT3O60422 494 aaPredicted RBP11.01□□□□□ -0.65
SMAD4-216ENST00000593223 FAM161AQ3B820 660 aa11.01□□□□□ -0.65
SMAD4-216ENST00000593223 TTC13Q8NBP0 860 aa11.01□□□□□ -0.65
SMAD4-216ENST00000593223 FAM198AQ9UFP1 575 aa11.01□□□□□ -0.65
SMAD4-216ENST00000593223 TK2O00142 265 aa11□□□□□ -0.65
SMAD4-216ENST00000593223 ADGRD1Q6QNK2 874 aa11□□□□□ -0.65
SMAD4-216ENST00000593223 CCDC102AQ96A19 550 aa11□□□□□ -0.65
SMAD4-216ENST00000593223 AK7Q96M32 723 aa11□□□□□ -0.65
SMAD4-216ENST00000593223 STAC3Q96MF2 364 aa11□□□□□ -0.65
SMAD4-216ENST00000593223 RABGEF1Q9UJ41 708 aa11□□□□□ -0.65
SMAD4-216ENST00000593223 PNMA3Q9UL41 463 aa11□□□□□ -0.65
SMAD4-216ENST00000593223 OATP04181 439 aa10.99□□□□□ -0.65
SMAD4-216ENST00000593223 RBM46Q8TBY0 533 aaKnown RBP10.99□□□□□ -0.65
SMAD4-216ENST00000593223 NUDT18Q6ZVK8 323 aa10.98□□□□□ -0.65
SMAD4-216ENST00000593223 TATDN2Q93075 761 aa10.98□□□□□ -0.65
SMAD4-216ENST00000593223 RNF166Q96A37 237 aaPredicted RBP10.98□□□□□ -0.65
SMAD4-216ENST00000593223 ADGRG1Q9Y653 693 aa10.98□□□□□ -0.65
SMAD4-216ENST00000593223 NBPF3Q9H094 633 aa10.97□□□□□ -0.65
SMAD4-216ENST00000593223 SMAPO00193 183 aa10.96□□□□□ -0.65
SMAD4-216ENST00000593223 SEPT9Q9UHD8 586 aaPredicted RBP10.95□□□□□ -0.66
SMAD4-216ENST00000593223 MRPL50Q8N5N7 158 aaKnown RBP10.94□□□□□ -0.66
SMAD4-216ENST00000593223 C3orf80F5H4A9 247 aa10.93□□□□□ -0.66
SMAD4-216ENST00000593223 METTL3Q86U44 580 aaKnown RBP10.93□□□□□ -0.66
SMAD4-216ENST00000593223 TRIM66O15016 1216 aa10.92□□□□□ -0.66
SMAD4-216ENST00000593223 PXYLP1Q8TE99 480 aa10.92□□□□□ -0.66
SMAD4-216ENST00000593223 MYT1LQ9UL68 1186 aa10.92□□□□□ -0.66
SMAD4-216ENST00000593223 GOLGA8CPA6NN73 597 aa10.91□□□□□ -0.66
SMAD4-216ENST00000593223 EYA1Q99502 592 aa10.91□□□□□ -0.66
SMAD4-216ENST00000593223 BHMG1C9JSJ3 638 aaPredicted RBP10.9□□□□□ -0.66
SMAD4-216ENST00000593223 HRO43593 1189 aa10.89□□□□□ -0.67
SMAD4-216ENST00000593223 HDGFP51858 240 aaKnown RBP10.89□□□□□ -0.67
SMAD4-216ENST00000593223 FAM98CQ17RN3 349 aaKnown RBP10.89□□□□□ -0.67
SMAD4-216ENST00000593223 LAPTM4BQ86VI4 370 aa10.89□□□□□ -0.67
SMAD4-216ENST00000593223 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.88□□□□□ -0.67
SMAD4-216ENST00000593223 RCCD1A6NED2 376 aa10.88□□□□□ -0.67
SMAD4-216ENST00000593223 DNAJB2P25686 324 aa10.88□□□□□ -0.67
SMAD4-216ENST00000593223 TTLL12Q14166 644 aaPredicted RBP10.88□□□□□ -0.67
SMAD4-216ENST00000593223 NLRP7Q8WX94 980 aa10.88□□□□□ -0.67
SMAD4-216ENST00000593223 MDM2Q00987 491 aaPredicted RBP10.87□□□□□ -0.67
SMAD4-216ENST00000593223 PHOX2BQ99453 314 aa10.87□□□□□ -0.67
SMAD4-216ENST00000593223 PDE4DQ08499 809 aa10.86□□□□□ -0.67
SMAD4-216ENST00000593223 ZFRQ96KR1 1074 aaKnown RBP10.85□□□□□ -0.67
SMAD4-216ENST00000593223 CLCN1P35523 988 aa10.84□□□□□ -0.67
SMAD4-216ENST00000593223 NEUROD2Q15784 382 aa10.84□□□□□ -0.67
SMAD4-216ENST00000593223 AMHR2Q16671 573 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms