RNA–Protein interactions for RNA: ENST00000592619.5

VMP1-215, Transcript of vacuole membrane protein 1, humanhuman

TSL 5

Gene VMP1, Length 838 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-215ENST00000592619 DDRGK1Q96HY6 314 aa12.46□□□□□ -0.41
VMP1-215ENST00000592619 FAM117AQ9C073 453 aa12.46□□□□□ -0.41
VMP1-215ENST00000592619 PARP9Q8IXQ6 854 aa12.45□□□□□ -0.42
VMP1-215ENST00000592619 EN1Q05925 392 aaPredicted RBP12.43□□□□□ -0.42
VMP1-215ENST00000592619 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.42□□□□□ -0.42
VMP1-215ENST00000592619 MARVELD3Q96A59 401 aa12.41□□□□□ -0.42
VMP1-215ENST00000592619 ARXQ96QS3 562 aa12.41□□□□□ -0.42
VMP1-215ENST00000592619 NPDC1Q9NQX5 325 aaPredicted RBP12.41□□□□□ -0.42
VMP1-215ENST00000592619 PLEKHG3A1L390 1219 aa12.4□□□□□ -0.42
VMP1-215ENST00000592619 PCDHGA4Q9Y5G9 962 aa12.39□□□□□ -0.43
VMP1-215ENST00000592619 PCDHGA10Q9Y5H3 936 aa12.38□□□□□ -0.43
VMP1-215ENST00000592619 KDM4FA0A1W2PPD8 638 aa12.37□□□□□ -0.43
VMP1-215ENST00000592619 SNPHO15079 494 aa12.37□□□□□ -0.43
VMP1-215ENST00000592619 MAP3K7O43318 606 aa12.37□□□□□ -0.43
VMP1-215ENST00000592619 TYW1BQ6NUM6 668 aa12.37□□□□□ -0.43
VMP1-215ENST00000592619 TTLL12Q14166 644 aaPredicted RBP12.36□□□□□ -0.43
VMP1-215ENST00000592619 FBXW7Q969H0 707 aa12.36□□□□□ -0.43
VMP1-215ENST00000592619 CDHR5Q9HBB8 845 aa12.36□□□□□ -0.43
VMP1-215ENST00000592619 GOPCQ9HD26 462 aa12.36□□□□□ -0.43
VMP1-215ENST00000592619 JPH4Q96JJ6 628 aa12.34□□□□□ -0.43
VMP1-215ENST00000592619 GIGYF2Q6Y7W6 1299 aaKnown RBP12.32□□□□□ -0.44
VMP1-215ENST00000592619 RBM33Q96EV2 1170 aaKnown RBP12.31□□□□□ -0.44
VMP1-215ENST00000592619 TMUB1Q9BVT8 246 aa12.31□□□□□ -0.44
VMP1-215ENST00000592619 TSR1Q2NL82 804 aaKnown RBP12.3□□□□□ -0.44
VMP1-215ENST00000592619 CLCN1P35523 988 aa12.29□□□□□ -0.44
VMP1-215ENST00000592619 FOSBP53539 338 aa12.29□□□□□ -0.44
VMP1-215ENST00000592619 CERKQ8TCT0 537 aa12.29□□□□□ -0.44
VMP1-215ENST00000592619 REPIN1Q9BWE0 567 aaKnown RBP12.29□□□□□ -0.44
VMP1-215ENST00000592619 MS4A1P11836 297 aa12.28□□□□□ -0.44
VMP1-215ENST00000592619 ZMYND15Q9H091 742 aa12.28□□□□□ -0.44
VMP1-215ENST00000592619 GPCPD1Q9NPB8 672 aa12.26□□□□□ -0.45
VMP1-215ENST00000592619 SUPT5HO00267 1087 aaKnown RBP12.25□□□□□ -0.45
VMP1-215ENST00000592619 C6orf132Q5T0Z8 1188 aa12.25□□□□□ -0.45
VMP1-215ENST00000592619 OATP04181 439 aa12.24□□□□□ -0.45
VMP1-215ENST00000592619 EMP3P54852 163 aa12.24□□□□□ -0.45
VMP1-215ENST00000592619 PHOX2BQ99453 314 aa12.24□□□□□ -0.45
VMP1-215ENST00000592619 KRTAP3-3Q9BYR6 98 aa12.24□□□□□ -0.45
VMP1-215ENST00000592619 KRTAP3-2Q9BYR7 98 aa12.24□□□□□ -0.45
VMP1-215ENST00000592619 ZDHHC16Q969W1 377 aa12.23□□□□□ -0.45
VMP1-215ENST00000592619 RBM27Q9P2N5 1060 aaKnown RBP12.23□□□□□ -0.45
VMP1-215ENST00000592619 POTEB3A0JP26 581 aa12.22□□□□□ -0.45
VMP1-215ENST00000592619 MDM2Q00987 491 aaPredicted RBP12.22□□□□□ -0.45
VMP1-215ENST00000592619 DOK7Q18PE1 504 aa12.22□□□□□ -0.45
VMP1-215ENST00000592619 POTEBQ6S5H4 581 aa12.22□□□□□ -0.45
VMP1-215ENST00000592619 TTC13Q8NBP0 860 aa12.22□□□□□ -0.45
VMP1-215ENST00000592619 ZSWIM6Q9HCJ5 1215 aa12.22□□□□□ -0.45
VMP1-215ENST00000592619 METTL3Q86U44 580 aaKnown RBP12.21□□□□□ -0.45
VMP1-215ENST00000592619 SSTR3P32745 418 aaPredicted RBP12.2□□□□□ -0.46
VMP1-215ENST00000592619 FLIIQ13045 1269 aa12.2□□□□□ -0.46
VMP1-215ENST00000592619 ZNF454Q8N9F8 522 aa12.2□□□□□ -0.46
VMP1-215ENST00000592619 SH3D19Q5HYK7 790 aa12.19□□□□□ -0.46
VMP1-215ENST00000592619 HOMEZQ8IX15 550 aa12.19□□□□□ -0.46
VMP1-215ENST00000592619 PCMTD1Q96MG8 357 aaPredicted RBP12.19□□□□□ -0.46
VMP1-215ENST00000592619 RSPH6AQ9H0K4 717 aa12.19□□□□□ -0.46
VMP1-215ENST00000592619 ADGRG1Q9Y653 693 aa12.19□□□□□ -0.46
VMP1-215ENST00000592619 HOXB3P14651 431 aaPredicted RBP12.18□□□□□ -0.46
VMP1-215ENST00000592619 PADI6Q6TGC4 694 aa12.18□□□□□ -0.46
VMP1-215ENST00000592619 HS3ST6Q96QI5 342 aa12.18□□□□□ -0.46
VMP1-215ENST00000592619 RIMBP2O15034 1052 aa12.17□□□□□ -0.46
VMP1-215ENST00000592619 NUDT7P0C024 238 aa12.17□□□□□ -0.46
VMP1-215ENST00000592619 PXYLP1Q8TE99 480 aa12.17□□□□□ -0.46
VMP1-215ENST00000592619 FAM205CA6NFA0 338 aa12.16□□□□□ -0.46
VMP1-215ENST00000592619 ARSIQ5FYB1 569 aa12.16□□□□□ -0.46
VMP1-215ENST00000592619 GPR153Q6NV75 609 aa12.16□□□□□ -0.46
VMP1-215ENST00000592619 FAM217BQ9NTX9 383 aaPredicted RBP12.16□□□□□ -0.46
VMP1-215ENST00000592619 ADAM33Q9BZ11 813 aa12.15□□□□□ -0.46
VMP1-215ENST00000592619 ONECUT3O60422 494 aaPredicted RBP12.14□□□□□ -0.47
VMP1-215ENST00000592619 PRSS12P56730 875 aa12.14□□□□□ -0.47
VMP1-215ENST00000592619 SKIV2LQ15477 1246 aaKnown RBP12.14□□□□□ -0.47
VMP1-215ENST00000592619 FAM161AQ3B820 660 aa12.14□□□□□ -0.47
VMP1-215ENST00000592619 KHSRPQ92945 711 aaKnown RBP eCLIP12.13□□□□□ -0.471e-7■■■■□ 24
VMP1-215ENST00000592619 BEGAINQ9BUH8 593 aa12.13□□□□□ -0.47
VMP1-215ENST00000592619 CDCA7LQ96GN5 454 aa12.11□□□□□ -0.47
VMP1-215ENST00000592619 PSDA5PKW4 1024 aaPredicted RBP12.1□□□□□ -0.47
VMP1-215ENST00000592619 RBM46Q8TBY0 533 aaKnown RBP12.1□□□□□ -0.47
VMP1-215ENST00000592619 PPP4R3BQ5MIZ7 849 aa12.07□□□□□ -0.48
VMP1-215ENST00000592619 ZNF710Q8N1W2 664 aa12.07□□□□□ -0.48
VMP1-215ENST00000592619 NLRP7Q8WX94 980 aa12.07□□□□□ -0.48
VMP1-215ENST00000592619 BCL2L12Q9HB09 334 aa12.07□□□□□ -0.48
VMP1-215ENST00000592619 LHX6Q9UPM6 363 aa12.07□□□□□ -0.48
VMP1-215ENST00000592619 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.05□□□□□ -0.48
VMP1-215ENST00000592619 DIXDC1Q155Q3 683 aa12.04□□□□□ -0.48
VMP1-215ENST00000592619 MYSM1Q5VVJ2 828 aa12.03□□□□□ -0.48
VMP1-215ENST00000592619 EYA1Q99502 592 aa12.03□□□□□ -0.48
VMP1-215ENST00000592619 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.03□□□□□ -0.483e-6■■□□□ 12.1
VMP1-215ENST00000592619 A6NJR5 290 aa12.02□□□□□ -0.49
VMP1-215ENST00000592619 COL9A1P20849 921 aa12.02□□□□□ -0.49
VMP1-215ENST00000592619 FAM198AQ9UFP1 575 aa12.02□□□□□ -0.49
VMP1-215ENST00000592619 PPP1R3GB7ZBB8 358 aa12.01□□□□□ -0.49
VMP1-215ENST00000592619 PROCA1Q8NCQ7 364 aaPredicted RBP12.01□□□□□ -0.49
VMP1-215ENST00000592619 PTPREP23469 700 aa12□□□□□ -0.49
VMP1-215ENST00000592619 MCM6Q14566 821 aa12□□□□□ -0.49
VMP1-215ENST00000592619 POLR3EQ9NVU0 708 aa12□□□□□ -0.49
VMP1-215ENST00000592619 RCCD1A6NED2 376 aa11.99□□□□□ -0.49
VMP1-215ENST00000592619 TBC1D2Q9BYX2 928 aa11.99□□□□□ -0.49
VMP1-215ENST00000592619 CLK2P49760 499 aaKnown RBP11.98□□□□□ -0.49
VMP1-215ENST00000592619 TSKSQ9UJT2 592 aa11.98□□□□□ -0.49
VMP1-215ENST00000592619 HOXB1P14653 301 aaPredicted RBP11.97□□□□□ -0.49
VMP1-215ENST00000592619 NBPF26B4DH59 902 aa11.95□□□□□ -0.5
VMP1-215ENST00000592619 CD46P15529 392 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms