RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 NCKAP5LQ9HCH0 1330 aa18.8■□□□□ 0.6
CLIP3-204ENST00000590559 PKD2Q13563 968 aa18.8■□□□□ 0.6
CLIP3-204ENST00000590559 MAP3K1Q13233 1512 aa18.79■□□□□ 0.6
CLIP3-204ENST00000590559 MAST1Q9Y2H9 1570 aa18.79■□□□□ 0.6
CLIP3-204ENST00000590559 PZPP20742 1482 aa18.78■□□□□ 0.6
CLIP3-204ENST00000590559 POLR1AO95602 1720 aaPredicted RBP18.77■□□□□ 0.6
CLIP3-204ENST00000590559 RNF17Q9BXT8 1623 aaKnown RBP18.77■□□□□ 0.6
CLIP3-204ENST00000590559 KIF3BO15066 747 aa18.76■□□□□ 0.59
CLIP3-204ENST00000590559 NEURL4Q96JN8 1562 aa18.75■□□□□ 0.59
CLIP3-204ENST00000590559 ZNF335Q9H4Z2 1342 aaPredicted RBP18.74■□□□□ 0.59
CLIP3-204ENST00000590559 LOC105371045A0A1W2PR82 267 aa18.74■□□□□ 0.59
CLIP3-204ENST00000590559 FBXO31Q5XUX0 539 aaPredicted RBP18.74■□□□□ 0.59
CLIP3-204ENST00000590559 EIF2AK4Q9P2K8 1649 aaKnown RBP18.73■□□□□ 0.59
CLIP3-204ENST00000590559 TNRQ92752 1358 aa18.72■□□□□ 0.59
CLIP3-204ENST00000590559 ZC3H13Q5T200 1668 aaKnown RBP18.72■□□□□ 0.59
CLIP3-204ENST00000590559 MROH1Q8NDA8 1641 aa18.71■□□□□ 0.59
CLIP3-204ENST00000590559 KANK4Q5T7N3 995 aaPredicted RBP18.71■□□□□ 0.59
CLIP3-204ENST00000590559 MIA2Q96PC5 1412 aa18.71■□□□□ 0.59
CLIP3-204ENST00000590559 TSPY4P0CV99 314 aa18.7■□□□□ 0.58
CLIP3-204ENST00000590559 TSPY10P0CW01 314 aa18.7■□□□□ 0.58
CLIP3-204ENST00000590559 WASHC2CQ9Y4E1 1318 aa18.7■□□□□ 0.58
CLIP3-204ENST00000590559 MYOM3Q5VTT5 1437 aa18.69■□□□□ 0.58
CLIP3-204ENST00000590559 ABCC3O15438 1527 aa18.69■□□□□ 0.58
CLIP3-204ENST00000590559 NLRP1Q9C000 1473 aa18.68■□□□□ 0.58
CLIP3-204ENST00000590559 SPATA31D1Q6ZQQ2 1576 aa18.68■□□□□ 0.58
CLIP3-204ENST00000590559 DEPDC5O75140 1603 aa18.67■□□□□ 0.58
CLIP3-204ENST00000590559 MED14O60244 1454 aa18.65■□□□□ 0.58
CLIP3-204ENST00000590559 UGGT1Q9NYU2 1555 aa18.65■□□□□ 0.58
CLIP3-204ENST00000590559 CROCC2H7BZ55 1655 aa18.65■□□□□ 0.58
CLIP3-204ENST00000590559 CEP152O94986 1710 aa18.65■□□□□ 0.58
CLIP3-204ENST00000590559 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.63■□□□□ 0.57
CLIP3-204ENST00000590559 DUOX2Q9NRD8 1548 aa18.63■□□□□ 0.57
CLIP3-204ENST00000590559 VWDEQ8N2E2 1590 aa18.63■□□□□ 0.57
CLIP3-204ENST00000590559 ILDR2Q71H61 639 aa18.62■□□□□ 0.57
CLIP3-204ENST00000590559 DISP3Q9P2K9 1392 aa18.62■□□□□ 0.57
CLIP3-204ENST00000590559 CPS1P31327 1500 aa18.62■□□□□ 0.57
CLIP3-204ENST00000590559 ERVK-7P63135 1459 aa18.61■□□□□ 0.57
CLIP3-204ENST00000590559 SHANK2Q9UPX8 1470 aa18.61■□□□□ 0.57
CLIP3-204ENST00000590559 THEMISQ8N1K5 641 aaPredicted RBP18.6■□□□□ 0.57
CLIP3-204ENST00000590559 CFAP65Q6ZU64 1925 aaKnown RBP18.6■□□□□ 0.57
CLIP3-204ENST00000590559 UBR1Q8IWV7 1749 aa18.6■□□□□ 0.57
CLIP3-204ENST00000590559 PTPN23Q9H3S7 1636 aa18.6■□□□□ 0.57
CLIP3-204ENST00000590559 PRDM15P57071 1507 aaPredicted RBP18.59■□□□□ 0.57
CLIP3-204ENST00000590559 UBAP1LF5GYI3 381 aa18.59■□□□□ 0.57
CLIP3-204ENST00000590559 IQGAP1P46940 1657 aa18.59■□□□□ 0.57
CLIP3-204ENST00000590559 ABCC5O15440 1437 aa18.58■□□□□ 0.57
CLIP3-204ENST00000590559 STRCP1A6NGW2 1772 aa18.58■□□□□ 0.57
CLIP3-204ENST00000590559 ANKLE2Q86XL3 938 aa18.58■□□□□ 0.56
CLIP3-204ENST00000590559 NPHP4O75161 1426 aaPredicted RBP18.57■□□□□ 0.56
CLIP3-204ENST00000590559 ARHGAP31Q2M1Z3 1444 aa18.56■□□□□ 0.56
CLIP3-204ENST00000590559 ALKQ9UM73 1620 aa18.56■□□□□ 0.56
CLIP3-204ENST00000590559 ERBINQ96RT1 1412 aa18.55■□□□□ 0.56
CLIP3-204ENST00000590559 KIF15Q9NS87 1388 aa18.54■□□□□ 0.56
CLIP3-204ENST00000590559 DAPK1P53355 1430 aa18.53■□□□□ 0.56
CLIP3-204ENST00000590559 FGD6Q6ZV73 1430 aa18.52■□□□□ 0.56
CLIP3-204ENST00000590559 ARHGAP23Q9P227 1491 aa18.52■□□□□ 0.55
CLIP3-204ENST00000590559 SLIT1O75093 1534 aa18.51■□□□□ 0.55
CLIP3-204ENST00000590559 SOCS7O14512 581 aa18.49■□□□□ 0.55
CLIP3-204ENST00000590559 LMTK2Q8IWU2 1503 aa18.49■□□□□ 0.55
CLIP3-204ENST00000590559 KDM5AP29375 1690 aaKnown RBP18.48■□□□□ 0.55
CLIP3-204ENST00000590559 SYNMO15061 1565 aa18.47■□□□□ 0.55
CLIP3-204ENST00000590559 RRP7BPQ9NSQ0 103 aa18.47■□□□□ 0.55
CLIP3-204ENST00000590559 PIK3C2BO00750 1634 aa18.47■□□□□ 0.55
CLIP3-204ENST00000590559 LRRC7Q96NW7 1537 aa18.47■□□□□ 0.55
CLIP3-204ENST00000590559 SCAF11Q99590 1463 aaKnown RBP18.46■□□□□ 0.55
CLIP3-204ENST00000590559 TOM1O60784 492 aa18.46■□□□□ 0.55
CLIP3-204ENST00000590559 XIRP1Q702N8 1843 aaKnown RBP18.45■□□□□ 0.54
CLIP3-204ENST00000590559 LTKP29376 864 aa18.44■□□□□ 0.54
CLIP3-204ENST00000590559 HSPA1LP34931 641 aa18.44■□□□□ 0.54
CLIP3-204ENST00000590559 ADGRL2O95490 1459 aa18.44■□□□□ 0.54
CLIP3-204ENST00000590559 APLP2Q06481 763 aa18.42■□□□□ 0.54
CLIP3-204ENST00000590559 ANKRD30AQ9BXX3 1397 aa18.42■□□□□ 0.54
CLIP3-204ENST00000590559 EFCAB6Q5THR3 1501 aa18.4■□□□□ 0.54
CLIP3-204ENST00000590559 MED1Q15648 1581 aaPredicted RBP18.4■□□□□ 0.54
CLIP3-204ENST00000590559 PIP4K2BP78356 416 aa18.4■□□□□ 0.54
CLIP3-204ENST00000590559 KANK1Q14678 1352 aa18.39■□□□□ 0.53
CLIP3-204ENST00000590559 NOS1P29475 1434 aa18.39■□□□□ 0.53
CLIP3-204ENST00000590559 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.38■□□□□ 0.53
CLIP3-204ENST00000590559 TMEM2Q9UHN6 1383 aa18.38■□□□□ 0.53
CLIP3-204ENST00000590559 TET3O43151 1660 aa18.38■□□□□ 0.53
CLIP3-204ENST00000590559 TXNDC2Q86VQ3 553 aa18.37■□□□□ 0.53
CLIP3-204ENST00000590559 CHIC2Q9UKJ5 165 aa18.37■□□□□ 0.53
CLIP3-204ENST00000590559 SCAF1Q9H7N4 1312 aaKnown RBP18.36■□□□□ 0.53
CLIP3-204ENST00000590559 IDI1Q13907 227 aa18.35■□□□□ 0.53
CLIP3-204ENST00000590559 ADGRB3O60242 1522 aa18.33■□□□□ 0.53
CLIP3-204ENST00000590559 EID1Q9Y6B2 187 aa18.32■□□□□ 0.52
CLIP3-204ENST00000590559 MYO5BQ9ULV0 1848 aa18.32■□□□□ 0.52
CLIP3-204ENST00000590559 RPRD2Q5VT52 1461 aaKnown RBP18.32■□□□□ 0.52
CLIP3-204ENST00000590559 GCC2Q8IWJ2 1684 aa18.3■□□□□ 0.52
CLIP3-204ENST00000590559 ANKRD50Q9ULJ7 1429 aa18.3■□□□□ 0.52
CLIP3-204ENST00000590559 UNC13BO14795 1591 aa18.3■□□□□ 0.52
CLIP3-204ENST00000590559 NWD1Q149M9 1564 aa18.29■□□□□ 0.52
CLIP3-204ENST00000590559 SLC52A1Q9NWF4 448 aa18.28■□□□□ 0.52
CLIP3-204ENST00000590559 TMEM131LA2VDJ0 1609 aa18.27■□□□□ 0.51
CLIP3-204ENST00000590559 ZFYVE9O95405 1425 aa18.26■□□□□ 0.51
CLIP3-204ENST00000590559 FAM50AQ14320 339 aaKnown RBP18.25■□□□□ 0.51
CLIP3-204ENST00000590559 STAG3Q9UJ98 1225 aa18.25■□□□□ 0.51
CLIP3-204ENST00000590559 CHD2O14647 1828 aaKnown RBP18.25■□□□□ 0.51
CLIP3-204ENST00000590559 E9PCH4 1651 aa18.25■□□□□ 0.51
CLIP3-204ENST00000590559 KCNA6P17658 529 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms